Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009882

Physical Location & Seq

Genomic Coordinates Reverse (-)

44178422 .. 44181687

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGATTGTTTTAGGACACAATTCCTTCAGAATTGGCAAGACCACTATTGCTAAAGCTGCTTATAATCTGAACCTGGATAGATTTGAAGGAAGAAGTTTTCTTGCAGATGTTAGAGCAACTACAGAACAACCTAATGGTTTGGTTCGCTTGCAGAGGAACCTTCTTTCAGATATCCAAAGGAGAAAAACAAAAAAGATAAACAGCGTGGACGAAGGTACAAGCAAAATCAAGAATGTTGTATGCTGCAAAAGAGTACTTATTGTTCTTGATGATGTGAACGACTTGGACCAGTTCAATGCGATTCTTGGAATGCGAGAGTGGTTTCATCCAGGAAGCAAGATTATCATAACAACTAGAGATAAACACTTGTTAACGGCTACTGGGGTTTCTAACATGTTCATGGTTCCAGAATTGGATGAGCATGAATCACTTCAGCTTTTCAGTTGGCATGCCTTCAGACAAGCTCATCCTATCGGAGGCTACATGGAGGTTTCAGCACTCATAGTAAAACATTGTGGAGGGCTACCGTTAGCCCTCCAAGTTCTGGGGTCTTCTCTATTTGGAAAAAGTGTACATGTATGGTACAAGACATGGGAAGAGGAATTGTTCGCGAAGAATCAGTTGAGGACCCTGGGTAGAGTGGCGCAAAAAGATGCCTATGATATTTTGAAAAACGCATCGGGCACGCAAACTATCAAGGGTCTCTTGCTCAACCTTTCTATGCTAATGGATGGTATGTCTTCCAAGGCAATACTTAACAATAAACGAGGGCATGCCGAAGAATCAGATGGAAATTGTTCAAGACGGCGTCGACTTAGTTTCTTCTCCTGGCAATCAATCAACTATTCCTCAACAAATTTAGCTTCTATATCGAGTGTGGCAGACTTCAAGACAGAGGCATTCAAAAAGATGCCCAATCTTCAACTTCTCCTGCTCAATAATGTAAAAGTCAGTGGTGGCTACGGAGAGTTTCCAAAAACACTAATATGGTTGTCTTGGCAAGGGTTCCCCATGAAATCAATACCAGCCGATTTTTGTTTGAAAAATCTAGTTGCTCTTGAGTTGAAGCATAGCATCCTGCAAGTTGTATGGAAGGGAACCAAGTTTTTTCCAGGATTGAAAATCCTTGATCTCAGTCATTCACAGGGTCTTGTTAGAACCCCAGACTTGTCCGGACTCCCTAACCTTGAGAGATTAATTCTTAAAGATTGCATAAATATTGTCGAGATTGATGAATCCATCGGAGAACTTCAAAAACTTGTATTCTTGAATCTAAAAGACTGCAAAAATCTCGTGAAGCTTCCAAGAAGAATTAGCATGTTGAGATCTCTTCATGAGCTAATCCTTTCTGGCTGCTCAAAGCTCGGTGATAATGAGGAACTCGGTCTTTTATCAAATAAACCATGGTTATCAATCTGTTCGTGGGTATCACCAAGAAAAAGTCTTGAAGCTGCAACCAGCAGCTTCTCATTTGCATATTTGCCACAGTCTTTAGGAAGCTTAAGTCTGGCTGATTGCAATCTATCAAAGATTTCCGATGATATTAGTGTTCTGTCTTCGTTGAAGCATCTGGATATAAGTGGCAACCCAATGCTAAGTCTTCCGGAGAGCATAAAGACACTTATTATGCTTGACACCCTTTTCTTAGGACATTGCAACAAGCTCAAAATGCTTCCAGAGCTCCCACCAAGTTTAAGTACTTTGCATGCAGAAGGTTGTACATCGTTGAGAAAAGTTACGAACTTACCAAACTATTTCATATCCCTACAACCATCTCTTACGCAATGCGAAGAATTAGCTGAAGTTCAAAGCTTATTCACTATAAAACCATTGAGAAGCACCGACATACAGATGATAAAATATATGGGTCTGTACAATTTGGAATCCACTGAAAGCATTGAAGTCGAAATGAGCAATCAGCTGACACTTACAGACAAGACAGGTCCACTCCAGGGACTCTATGAATGTGGAATATTTAGCATTTTCCTTCATGGAAGCACAATTCCTGACCGCTACACCTACAGAAGCATGGGTGATTCAGTGTTGTCTATAACTGTTCCTTCCCATCTTAAGCTTAAGATCCGAGGCTTAAATGTATGTATTCTATATGCACTAGGCCCATGCCAGCACCTTAAAGTCAGTAATGACACGAAGGGTCTTATGTGGACATACTGCCCAGTCACTGTAGGTGTTCCTAAAGAGGAAGGACTGATGCTATGGCTAAGTCATTGGCTGTTTGAGAACCATGAGTTGGAGGCTGGGGATGAATTACGTGTCTCGGTGCATAATGGAGCTATATTCTTCAACCCTCTTGGTCGTCAAGACGTTCTTCCAGCAAAGGAATTTGGAATCCAACTTGTGTATGAATCGGAAAATAAGGACGTCCGATCCAAAAGTGAAGATCTTACGGTACAACATGAAGCGCCTTATTGGAGTTACGATATTGTTACTGGGAATGGATCATTATTGTCAGCATCAAAGTATCAAATGTGGACAGGCAAATACTTTCTTTGCAATTATATTCACAATATGCGTCAGCTTCATTTCAGAAATTGCGAGGAGAATCCAGCTCATCTTGATTTTTCATATGAGCCCAAAGATCGTTTGAGTGGATATTGCCGTCATTTATTTGAGCACACTCACTTTCACAAGAAAAAATTTGAGTTTGTATTGAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

893

Amino Acids

100.89

Weight (kDa)

8.55

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	11 - 154	3.5e-13	NB-ARC domain
LRR_13	PF23286	369 - 584	1.1e-06	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25140
fragaria_vesca	FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica	MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica	Prupe.1G392200_v2.0.a1
pyrus_communis	pycom08g04820 pycom15g03540
rosa_chinensis	RchiOBHm_Chr6g0299601
rosa_laevigata	RLG00000011406
rosa_multiflora	Rmu_sc0002895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168520
rosa_rugosa	Rorug06G0290800 Rorug06G0290900
rosa_samantha	Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana	Rw6G035150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AatII	GACGTC	1 cut(s)	2385
AccB7I	CCANNNNNTGG	2 cut(s)	544, 2251
AccI	GTMKAC	1 cut(s)	811
AccII	CGCG	1 cut(s)	611
AccIII	TCCGGA	2 cut(s)	1172, 1603
AciI	CCGC	1 cut(s)	2011
AclWI	GGATC	3 cut(s)	2074, 2382, 2467
AcsI	RAATTY	3 cut(s)	856, 2342, 2657
AcuI	CTGAAG	4 cut(s)	10, 416, 439, 1821
AcyI	GRCGYC	2 cut(s)	808, 2382
AfaI	GTAC	8 cut(s)	217, 255, 573, 584, 1699, 1720, 1874, 2412
AfiI	CCNNNNNNNGG	4 cut(s)	476, 544, 1952, 2251
AflII	CTTAAG	3 cut(s)	1501, 2069, 2075
AflIII	ACRYGT	3 cut(s)	393, 574, 2272
AjnI	CCWGG	6 cut(s)	72, 328, 630, 827, 1111, 1950
AjuI	GAANNNNNNNTTGG	2 cut(s)	2234, 2266
Alw21I	GWGCWC	2 cut(s)	1683, 2637
Alw26I	GTCTC	2 cut(s)	707, 2281
AlwI	GGATC	3 cut(s)	2074, 2382, 2467
AlwNI	CAGNNNCTG	1 cut(s)	2183
Aor13HI	TCCGGA	2 cut(s)	1172, 1603
AoxI	GGCC	1 cut(s)	2116
ApeKI	GCWGC	5 cut(s)	56, 243, 1353, 1451, 1461
ApoI	RAATTY	3 cut(s)	856, 2342, 2657
AseI	ATTAAT	1 cut(s)	1196
Asp700I	GAANNNNTTC	2 cut(s)	429, 796
AspLEI	GCGC	2 cut(s)	646, 2425
AspS9I	GGNCC	4 cut(s)	286, 627, 1943, 2117
AsuHPI	GGTGA	3 cut(s)	1379, 1422, 2045
AvaII	GGWCC	3 cut(s)	286, 627, 1943
BaeGI	GKGCMC	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	1683, 2595
BauI	CACGAG	1 cut(s)	1292
BbsI	GAAGAC	4 cut(s)	543, 732, 1548, 1592
Bbv12I	GWGCWC	2 cut(s)	1683, 2637
BbvI	GCAGC	5 cut(s)	43, 230, 1340, 1438, 1473
BccI	CCATC	5 cut(s)	725, 782, 1247, 1780, 2073
BceAI	ACGGC	3 cut(s)	390, 821, 2604
BcgI	CGANNNNNNTGC	4 cut(s)	1273, 1307, 1885, 1919
BciT130I	CCWGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
BcoDI	GTCTC	2 cut(s)	707, 2281
BfaI	CTAG	3 cut(s)	354, 1049, 2114
BfmI	CTRYAG	3 cut(s)	120, 2020, 2184
BfoI	RGCGCY	1 cut(s)	2426
BfrI	CTTAAG	3 cut(s)	1501, 2069, 2075
BglII	AGATCT	2 cut(s)	1325, 2401
BisI	GCNGC	5 cut(s)	57, 244, 1354, 1452, 1462
BlsI	GCNGC	5 cut(s)	58, 245, 1355, 1453, 1463
BmcAI	AGTACT	2 cut(s)	255, 1699
Bme1390I	CCNGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
Bme18I	GGWCC	3 cut(s)	286, 627, 1943
BmgT120I	GGNCC	4 cut(s)	286, 627, 1943, 2117
BmiI	GGNNCC	5 cut(s)	158, 405, 629, 1007, 1099
BmrFI	CCNGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
BmrI	ACTGGG	3 cut(s)	390, 2171, 2460
BmsI	GCATC	7 cut(s)	643, 686, 900, 1083, 1576, 2202, 2483
BmuI	ACTGGG	3 cut(s)	390, 2171, 2460
BpiI	GAAGAC	4 cut(s)	543, 732, 1548, 1592
BpmI	CTGGAG	1 cut(s)	1934
BpuEI	CTTGAG	2 cut(s)	1079, 1208
BsaAI	YACGTR	1 cut(s)	2273
BsaBI	GATNNNNATC	1 cut(s)	1518
BsaHI	GRCGYC	2 cut(s)	808, 2382
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	6 cut(s)	630, 631, 744, 1403, 1951, 2083
BsaWI	WCCGGW	2 cut(s)	1172, 1603
Bsc4I	CCNNNNNNNGG	4 cut(s)	476, 544, 1952, 2251
Bse1I	ACTGG	4 cut(s)	289, 385, 2177, 2455
Bse3DI	GCAATG	2 cut(s)	1651, 1790
Bse8I	GATNNNNATC	1 cut(s)	1518
BseAI	TCCGGA	2 cut(s)	1172, 1603
BseBI	CCWGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
BseDI	CCNNGG	6 cut(s)	630, 631, 744, 1403, 1951, 2083
BseGI	GGATG	6 cut(s)	325, 421, 466, 736, 1074, 2269
BseJI	GATNNNNATC	1 cut(s)	1518
BseLI	CCNNNNNNNGG	4 cut(s)	476, 544, 1952, 2251
BseMI	GCAATG	2 cut(s)	1651, 1790
BseMII	CTCAG	1 cut(s)	1147
BseNI	ACTGG	4 cut(s)	289, 385, 2177, 2455
BseRI	GAGGAG	1 cut(s)	2573
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	5 cut(s)	43, 230, 1340, 1438, 1473
BseYI	CCCAGC	1 cut(s)	2258
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	1 cut(s)	2118
BsiHKAI	GWGCWC	2 cut(s)	1683, 2637
BsiSI	CCGG	2 cut(s)	1173, 1604
BslFI	GGGAC	1 cut(s)	1968
BslI	CCNNNNNNNGG	4 cut(s)	476, 544, 1952, 2251
BsmAI	GTCTC	2 cut(s)	707, 2281
BsmFI	GGGAC	1 cut(s)	1968
BsmI	GAATGC	2 cut(s)	315, 899
BsnI	GGCC	1 cut(s)	2118
Bso31I	GGTCTC	1 cut(s)	707
Bsp1286I	GDGCHC	4 cut(s)	686, 1683, 2595, 2637
Bsp13I	TCCGGA	2 cut(s)	1172, 1603
Bsp1407I	TGTACA	3 cut(s)	571, 1718, 1872
Bsp143I	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
Bsp19I	CCATGG	1 cut(s)	1403
Bsp68I	TCGCGA	1 cut(s)	611
BspACI	CCGC	1 cut(s)	2011
BspANI	GGCC	1 cut(s)	2118
BspCNI	CTCAG	1 cut(s)	1146
BspEI	TCCGGA	2 cut(s)	1172, 1603
BspFNI	CGCG	1 cut(s)	611
BspHI	TCATGA	1 cut(s)	1333
BspLI	GGNNCC	5 cut(s)	158, 405, 629, 1007, 1099
BspPI	GGATC	3 cut(s)	2074, 2382, 2467
BspTI	CTTAAG	3 cut(s)	1501, 2069, 2075
BspTNI	GGTCTC	1 cut(s)	707
BsrDI	GCAATG	2 cut(s)	1651, 1790
BsrGI	TGTACA	3 cut(s)	571, 1718, 1872
BsrI	ACTGG	4 cut(s)	289, 385, 2177, 2455
BssECI	CCNNGG	6 cut(s)	630, 631, 744, 1403, 1951, 2083
BssMI	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
BssNI	GRCGYC	2 cut(s)	808, 2382
BssSI	CACGAG	1 cut(s)	1292
BssT1I	CCWWGG	2 cut(s)	744, 1403
Bst2BI	CACGAG	1 cut(s)	1292
Bst2UI	CCWGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
Bst4CI	ACNGT	5 cut(s)	528, 1488, 2056, 2185, 2410
Bst6I	CTCTTC	2 cut(s)	591, 1335
BstACI	GRCGYC	2 cut(s)	808, 2382
BstAFI	CTTAAG	3 cut(s)	1501, 2069, 2075
BstAUI	TGTACA	3 cut(s)	571, 1718, 1872
BstBAI	YACGTR	1 cut(s)	2273
BstC8I	GCNNGC	6 cut(s)	149, 450, 686, 774, 1707, 2126
BstDEI	CTNAG	5 cut(s)	815, 1133, 1595, 1645, 2222
BstDSI	CCRYGG	1 cut(s)	1403
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	6 cut(s)	325, 421, 466, 736, 1074, 2269
BstFNI	CGCG	1 cut(s)	611
BstH2I	RGCGCY	1 cut(s)	2426
BstHHI	GCGC	2 cut(s)	646, 2425
BstKTI	GATC	7 cut(s)	1132, 1328, 2082, 2390, 2404, 2462, 2602
BstMAI	GTCTC	2 cut(s)	707, 2281
BstMBI	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 1669, 1678
BstNI	CCWGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
BstNSI	RCATGY	6 cut(s)	397, 452, 578, 776, 1321, 1709
BstSCI	CCNGG	6 cut(s)	72, 328, 630, 827, 1111, 1950
BstSFI	CTRYAG	3 cut(s)	120, 2020, 2184
BstSLI	GKGCMC	1 cut(s)	686
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	5 cut(s)	43, 230, 1340, 1438, 1473
BstV2I	GAAGAC	4 cut(s)	543, 732, 1548, 1592
BstX2I	RGATCY	3 cut(s)	1325, 2079, 2401
BstYI	RGATCY	3 cut(s)	1325, 2079, 2401
BsuRI	GGCC	1 cut(s)	2118
BtgI	CCRYGG	1 cut(s)	1403
BtsCI	GGATG	6 cut(s)	325, 421, 466, 736, 1074, 2269
BtsIMutI	CAGTG	4 cut(s)	958, 1887, 2046, 2181
BtuMI	TCGCGA	1 cut(s)	611
Cac8I	GCNNGC	6 cut(s)	149, 450, 686, 774, 1707, 2126
CaiI	CAGNNNCTG	1 cut(s)	2183
CciI	TCATGA	1 cut(s)	1333
CfoI	GCGC	2 cut(s)	646, 2425
Cfr13I	GGNCC	4 cut(s)	286, 627, 1943, 2117
CseI	GACGC	2 cut(s)	797, 2522
Csp6I	GTAC	8 cut(s)	216, 254, 572, 583, 1698, 1719, 1873, 2411
CviQI	GTAC	8 cut(s)	216, 254, 572, 583, 1698, 1719, 1873, 2411
DdeI	CTNAG	5 cut(s)	815, 1133, 1595, 1645, 2222
DpnI	GATC	7 cut(s)	1131, 1327, 2081, 2389, 2403, 2461, 2601
DpnII	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
Eam1104I	CTCTTC	2 cut(s)	591, 1335
EarI	CTCTTC	2 cut(s)	591, 1335
Ecl136II	GAGCTC	1 cut(s)	1681
Eco130I	CCWWGG	2 cut(s)	744, 1403
Eco24I	GRGCYC	2 cut(s)	1683, 2595
Eco31I	GGTCTC	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	3 cut(s)	286, 627, 1943
Eco53kI	GAGCTC	1 cut(s)	1681
Eco57I	CTGAAG	4 cut(s)	10, 416, 439, 1821
EcoICRI	GAGCTC	1 cut(s)	1681
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	627
EcoRII	CCWGG	6 cut(s)	72, 328, 630, 827, 1111, 1950
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	744, 1403
EcoT38I	GRGCYC	2 cut(s)	1683, 2595
ErhI	CCWWGG	2 cut(s)	744, 1403
FalI	AAGNNNNNCTT	4 cut(s)	689, 721, 2313, 2345
FaqI	GGGAC	1 cut(s)	1968
FauNDI	CATATG	1 cut(s)	2587
FblI	GTMKAC	1 cut(s)	811
Fnu4HI	GCNGC	5 cut(s)	57, 244, 1354, 1452, 1462
FokI	GGATG	6 cut(s)	312, 428, 453, 743, 1061, 2276
FriOI	GRGCYC	2 cut(s)	1683, 2595
Fsp4HI	GCNGC	5 cut(s)	57, 244, 1354, 1452, 1462
FspBI	CTAG	3 cut(s)	354, 1049, 2114
GlaI	GCGC	2 cut(s)	645, 2424
GluI	GCNGC	5 cut(s)	57, 244, 1354, 1452, 1462
GsaI	CCCAGC	1 cut(s)	2262
GsuI	CTGGAG	1 cut(s)	1934
HaeII	RGCGCY	1 cut(s)	2426
HaeIII	GGCC	1 cut(s)	2118
HapII	CCGG	2 cut(s)	1173, 1604
HgaI	GACGC	2 cut(s)	797, 2522
HhaI	GCGC	2 cut(s)	646, 2425
Hin1I	GRCGYC	2 cut(s)	808, 2382
Hin6I	GCGC	2 cut(s)	644, 2423
HinP1I	GCGC	2 cut(s)	644, 2423
HincII	GTYRAC	2 cut(s)	372, 812
HindII	GTYRAC	2 cut(s)	372, 812
HindIII	AAGCTT	4 cut(s)	1298, 1498, 1810, 2072
HpaI	GTTAAC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	1173, 1604
HphI	GGTGA	3 cut(s)	1379, 1422, 2045
Hpy166II	GTNNAC	8 cut(s)	208, 277, 372, 572, 812, 1946, 2166, 2493
Hpy8I	GTNNAC	8 cut(s)	208, 277, 372, 572, 812, 1946, 2166, 2493
Hpy99I	CGWCG	1 cut(s)	813
HpyCH4III	ACNGT	5 cut(s)	528, 1488, 2056, 2185, 2410
HpyCH4IV	ACGT	3 cut(s)	2272, 2325, 2382
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 1669, 1678
HpyF3I	CTNAG	5 cut(s)	815, 1133, 1595, 1645, 2222
HpySE526I	ACGT	3 cut(s)	2272, 2325, 2382
Hsp92I	GRCGYC	2 cut(s)	808, 2382
HspAI	GCGC	2 cut(s)	644, 2423
Kpn2I	TCCGGA	2 cut(s)	1172, 1603
KspAI	GTTAAC	1 cut(s)	372
Kzo9I	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
LmnI	GCTCC	2 cut(s)	1686, 2291
Lsp1109I	GCAGC	5 cut(s)	43, 230, 1340, 1438, 1473
LweI	GCATC	7 cut(s)	643, 686, 900, 1083, 1576, 2202, 2483
MaeI	CTAG	3 cut(s)	354, 1049, 2114
MaeII	ACGT	3 cut(s)	2272, 2325, 2382
MaeIII	GTNAC	4 cut(s)	1735, 2179, 2435, 2446
MalI	GATC	7 cut(s)	1131, 1327, 2081, 2389, 2403, 2461, 2601
MboI	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
MflI	RGATCY	3 cut(s)	1325, 2079, 2401
MhlI	GDGCHC	4 cut(s)	686, 1683, 2595, 2637
MlyI	GAGTC	2 cut(s)	1170, 1950
MmeI	TCCRAC	2 cut(s)	2232, 2377
MroI	TCCGGA	2 cut(s)	1172, 1603
MroXI	GAANNNNTTC	2 cut(s)	429, 796
MslI	CAYNNNNRTG	3 cut(s)	398, 985, 1850
MspA1I	CMGCKG	1 cut(s)	1921
MspCI	CTTAAG	3 cut(s)	1501, 2069, 2075
MspI	CCGG	2 cut(s)	1173, 1604
MspR9I	CCNGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
Mva1269I	GAATGC	2 cut(s)	315, 899
MvaI	CCWGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	3 cut(s)	56, 1669, 1678
NcoI	CCATGG	1 cut(s)	1403
NdeI	CATATG	1 cut(s)	2587
NdeII	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
NlaIV	GGNNCC	5 cut(s)	158, 405, 629, 1007, 1099
NmuCI	GTSAC	1 cut(s)	2179
NruI	TCGCGA	1 cut(s)	611
NspI	RCATGY	6 cut(s)	397, 452, 578, 776, 1321, 1709
PaeI	GCATGC	3 cut(s)	452, 776, 1709
PagI	TCATGA	1 cut(s)	1333
PasI	CCCWGGG	1 cut(s)	631
PciI	ACATGT	2 cut(s)	393, 574
PctI	GAATGC	2 cut(s)	315, 899
PdmI	GAANNNNTTC	2 cut(s)	429, 796
PflFI	GACNNNGTC	1 cut(s)	807
PflMI	CCANNNNNTGG	2 cut(s)	544, 2251
PfoI	TCCNGGA	2 cut(s)	328, 1111
PkrI	GCNGC	5 cut(s)	58, 245, 1355, 1453, 1463
PleI	GAGTC	2 cut(s)	1170, 1950
PpsI	GAGTC	2 cut(s)	1170, 1950
Ppu21I	YACGTR	1 cut(s)	2273
PpuMI	RGGWCCY	1 cut(s)	627
PscI	ACATGT	2 cut(s)	393, 574
PshBI	ATTAAT	1 cut(s)	1196
PsiI	TTATAA	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	1683
Psp5II	RGGWCCY	1 cut(s)	627
Psp6I	CCWGG	6 cut(s)	72, 328, 630, 827, 1111, 1950
PspFI	CCCAGC	1 cut(s)	2258
PspGI	CCWGG	6 cut(s)	72, 328, 630, 827, 1111, 1950
PspN4I	GGNNCC	5 cut(s)	158, 405, 629, 1007, 1099
PspPI	GGNCC	4 cut(s)	286, 627, 1943, 2117
PspPPI	RGGWCCY	1 cut(s)	627
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
PstNI	CAGNNNCTG	1 cut(s)	2183
PsuI	RGATCY	3 cut(s)	1325, 2079, 2401
PsyI	GACNNNGTC	1 cut(s)	807
PvuII	CAGCTG	1 cut(s)	1921
RruI	TCGCGA	1 cut(s)	611
RsaI	GTAC	8 cut(s)	217, 255, 573, 584, 1699, 1720, 1874, 2412
RsaNI	GTAC	8 cut(s)	216, 254, 572, 583, 1698, 1719, 1873, 2411
RseI	CAYNNNNRTG	3 cut(s)	398, 985, 1850
SacI	GAGCTC	1 cut(s)	1683
SalI	GTCGAC	1 cut(s)	810
SatI	GCNGC	5 cut(s)	57, 244, 1354, 1452, 1462
Sau3AI	GATC	7 cut(s)	1129, 1325, 2079, 2387, 2401, 2459, 2599
Sau96I	GGNCC	4 cut(s)	286, 627, 1943, 2117
ScaI	AGTACT	2 cut(s)	255, 1699
SchI	GAGTC	2 cut(s)	1170, 1950
ScrFI	CCNGG	6 cut(s)	74, 330, 632, 829, 1113, 1952
SduI	GDGCHC	4 cut(s)	686, 1683, 2595, 2637
SfaNI	GCATC	7 cut(s)	643, 686, 900, 1083, 1576, 2202, 2483
SfcI	CTRYAG	3 cut(s)	120, 2020, 2184
SinI	GGWCC	3 cut(s)	286, 627, 1943
SmiMI	CAYNNNNRTG	3 cut(s)	398, 985, 1850
SmlI	CTYRAG	5 cut(s)	1058, 1187, 1501, 2069, 2075
SmoI	CTYRAG	5 cut(s)	1058, 1187, 1501, 2069, 2075
SphI	GCATGC	3 cut(s)	452, 776, 1709
SsiI	CCGC	1 cut(s)	2011
SspI	AATATT	2 cut(s)	1219, 1974
SspMI	CTAG	3 cut(s)	354, 1049, 2114
SstI	GAGCTC	1 cut(s)	1683
StyD4I	CCNGG	6 cut(s)	72, 328, 630, 827, 1111, 1950
StyI	CCWWGG	2 cut(s)	744, 1403
TaaI	ACNGT	5 cut(s)	528, 1488, 2056, 2185, 2410
TaiI	ACGT	3 cut(s)	2275, 2328, 2385
TaqI	TCGA	4 cut(s)	811, 872, 1224, 1905
TaqII	GACCGA	1 cut(s)	1373
TatI	WGTACW	5 cut(s)	253, 571, 1697, 1718, 1872
TscAI	CASTG	4 cut(s)	958, 1894, 2046, 2188
TseFI	GTSAC	1 cut(s)	2179
TseI	GCWGC	5 cut(s)	56, 243, 1353, 1451, 1461
Tsp45I	GTSAC	1 cut(s)	2179
TspGWI	ACGGA	1 cut(s)	978
TspRI	CASTG	4 cut(s)	958, 1894, 2046, 2188
Tth111I	GACNNNGTC	1 cut(s)	807
Van91I	CCANNNNNTGG	2 cut(s)	544, 2251
Vha464I	CTTAAG	3 cut(s)	1501, 2069, 2075
VpaK11BI	GGWCC	3 cut(s)	286, 627, 1943
VspI	ATTAAT	1 cut(s)	1196
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	3 cut(s)	856, 2342, 2657
XceI	RCATGY	6 cut(s)	397, 452, 578, 776, 1321, 1709
XmiI	GTMKAC	1 cut(s)	811
XmnI	GAANNNNTTC	2 cut(s)	429, 796
XspI	CTAG	3 cut(s)	354, 1049, 2114
ZraI	GACGTC	1 cut(s)	2383
ZrmI	AGTACT	2 cut(s)	255, 1699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.