FvH4_2g41170

Nuclear nucleic acid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010385
Physical Location & Seq
Reverse (-)
29176266 .. 29178900
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41170.t1

Sequence Viewer

Length: 639 bp
ATGGAGGGAAGCTCAAGCTGTTCGGGGGTAGTGCCAGATTGGGTGTTGGAGTCGGTAAGAAGCAGCATGGGGCATCTAGAACAAGTAGCAGCCGAGTTGCCCCAATTGTTGGCTCTCTGTTCCGACCCGGAAGTGCTTGCCCAAATGCCGCCTATTCAGCGTGCCCAATCTCTTCTCTTGCTCTCTAATCTCACCACCACTCTATTCACCGTCAGGTTGAGATGCAGTGGAGTTTACGATGACGACCATCGCGTCAACACCGAGCTTGATAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCCTAGATTTGAGCAAAGCACCATTGCGACCATCCACCACTTTGAATCATCAGGCAGCAACCCGTTTCATCGAGCATTCTCTGCCTGACCTCACCCCAGAGCAGAGGCAAAATCTGAGAAATATTAGTAAAGGGGAGGGCCGAAAGATGAAGTATCTGGAAAGGAATGTTCAGAAGAAGAGGAAGTATCAATCACCTAATGCACAATCAGTTCAATCTGCTGCCAAGGAGTTTCTAGAGAAAGCTGCTCGCGACCTTCTCGGTGATGACAATGGTGGTATTAAGGGACCTCTAAGGCCTGGCTTCTCAGATAAAGATAATCTGAATTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

213

Amino Acids

23.81

Weight (kDa)

8.41

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 25 - 98 3.8e-07 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 109
AccII CGCG 2 cut(s) 252, 555
AciI CCGC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 628
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 349, 518
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 5 cut(s) 12, 18, 265, 295, 548
AluI AGCT 5 cut(s) 12, 18, 265, 295, 548
AoxI GGCC 2 cut(s) 442, 599
ApeKI GCWGC 5 cut(s) 63, 89, 359, 524, 548
ApoI RAATTY 1 cut(s) 628
AspS9I GGNCC 2 cut(s) 442, 590
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 5 cut(s) 184, 199, 388, 489, 578
AvaII GGWCC 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 166
BbvI GCAGC 5 cut(s) 75, 101, 371, 511, 535
BccI CCATC 2 cut(s) 255, 343
BciT130I CCWGG 1 cut(s) 603
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 3 cut(s) 77, 308, 539
BfmI CTRYAG 1 cut(s) 296
BisI GCNGC 6 cut(s) 64, 90, 149, 360, 525, 549
BlsI GCNGC 6 cut(s) 65, 91, 150, 361, 526, 550
Bme1390I CCNGG 2 cut(s) 128, 603
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 442, 590
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 2 cut(s) 128, 603
BmsI GCATC 2 cut(s) 82, 212
BplI GAGNNNNNCTC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 2 cut(s) 410, 624
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 5 cut(s) 75, 101, 371, 511, 535
Bsh1236I CGCG 2 cut(s) 252, 555
BshFI GGCC 2 cut(s) 444, 601
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 603
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 444, 601
Bsp1286I GDGCHC 1 cut(s) 166
Bsp68I TCGCGA 1 cut(s) 555
BspACI CCGC 1 cut(s) 149
BspANI GGCC 2 cut(s) 444, 601
BspCNI CTCAG 2 cut(s) 411, 623
BspFNI CGCG 2 cut(s) 252, 555
BspLI GGNNCC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 177, 476
BstAPI GCANNNNNTGC 1 cut(s) 385
BstC8I GCNNGC 3 cut(s) 138, 162, 553
BstDEI CTNAG 3 cut(s) 419, 596, 610
BstF5I GGATG 1 cut(s) 335
BstFNI CGCG 2 cut(s) 252, 555
BstMWI GCNNNNNNNGC 2 cut(s) 157, 385
BstNI CCWGG 1 cut(s) 603
BstSCI CCNGG 2 cut(s) 126, 601
BstSFI CTRYAG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 2 cut(s) 252, 555
BstV1I GCAGC 5 cut(s) 75, 101, 371, 511, 535
BsuRI GGCC 2 cut(s) 444, 601
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
BtuMI TCGCGA 1 cut(s) 555
Cac8I GCNNGC 3 cut(s) 138, 162, 553
Cfr13I GGNCC 2 cut(s) 442, 590
CseI GACGC 1 cut(s) 241
CviAII CATG 1 cut(s) 67
DdeI CTNAG 3 cut(s) 419, 596, 610
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 177, 476
EarI CTCTTC 2 cut(s) 177, 476
Eco130I CCWWGG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FaqI GGGAC 1 cut(s) 603
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 64, 90, 149, 360, 525, 549
FokI GGATG 1 cut(s) 322
Fsp4HI GCNGC 6 cut(s) 64, 90, 149, 360, 525, 549
FspBI CTAG 3 cut(s) 77, 308, 539
GluI GCNGC 6 cut(s) 64, 90, 149, 360, 525, 549
HaeIII GGCC 2 cut(s) 444, 601
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 241
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 50, 349
HpaII CCGG 1 cut(s) 128
HphI GGTGA 5 cut(s) 184, 199, 388, 489, 578
Hpy166II GTNNAC 2 cut(s) 235, 256
Hpy188I TCNGA 5 cut(s) 124, 420, 477, 613, 627
Hpy188III TCNNGA 5 cut(s) 77, 287, 461, 539, 554
Hpy8I GTNNAC 2 cut(s) 235, 256
HpyAV CCTTC 1 cut(s) 569
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 225, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 385
HpyF3I CTNAG 3 cut(s) 419, 596, 610
Hsp92II CATG 1 cut(s) 70
Lsp1109I GCAGC 5 cut(s) 75, 101, 371, 511, 535
LweI GCATC 2 cut(s) 82, 212
MaeI CTAG 3 cut(s) 77, 308, 539
MboII GAAGA 3 cut(s) 164, 490, 493
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 3 cut(s) 104, 278, 628
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 27, 147
MnlI CCTC 5 cut(s) 402, 404, 433, 477, 603
MseI TTAA 2 cut(s) 275, 585
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 128, 603
MunI CAATTG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 2 cut(s) 252, 555
MwoI GCNNNNNNNGC 2 cut(s) 157, 385
NciI CCSGG 1 cut(s) 128
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 591
NmeAIII GCCGAG 1 cut(s) 118
NruI TCGCGA 1 cut(s) 555
PceI AGGCCT 1 cut(s) 601
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 6 cut(s) 65, 91, 150, 361, 526, 550
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 2 cut(s) 442, 590
PspPPI RGGWCCY 1 cut(s) 590
RruI TCGCGA 1 cut(s) 555
SaqAI TTAA 2 cut(s) 275, 585
SatI GCNGC 6 cut(s) 64, 90, 149, 360, 525, 549
Sau96I GGNCC 2 cut(s) 442, 590
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 128, 603
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 2 cut(s) 82, 212
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 3 cut(s) 104, 278, 628
SseBI AGGCCT 1 cut(s) 601
SsiI CCGC 1 cut(s) 149
SspI AATATT 1 cut(s) 427
SspMI CTAG 3 cut(s) 77, 308, 539
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 2 cut(s) 126, 601
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 375
TasI AATT 3 cut(s) 104, 278, 628
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 2 cut(s) 275, 585
Tru9I TTAA 2 cut(s) 275, 585
TscAI CASTG 1 cut(s) 232
TseI GCWGC 5 cut(s) 63, 89, 359, 524, 548
TspDTI ATGAA 2 cut(s) 361, 467
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 628
XbaI TCTAGA 2 cut(s) 76, 538
XspI CTAG 3 cut(s) 77, 308, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.