Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010385

Physical Location & Seq

Genomic Coordinates Forward (+)

3474273 .. 3475723

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAAGGAAGCTCTATAATACCAGATTCAGTGATGGAATCAGTGAAGAAAACCTTGGGGGACGTCCAAGAACTTCGACCCCACCTCCTCCAGTTCCTCTCACTCGCCGACGCCTACGTCCTCGCCGAAATGCCGCCGCTCGACCGCGCCCACTCGCTGCTTATGCTCTCCAAGGCCACCACCCTCCTCTTCGCCTTGAGGCTGAGGTGCACTGGAGTAAACCCATTTAACCATCCAGTCAAAACGGAGTTCGATAGATTAAAATTGTATGAGGAGAAGCTTGAGAAGTTGGTGGATTTGAGTAAAGCTCCTTTGCGACCGTCTACTACTTTAAATCATCAGGCAGCTACCCGTTTCATCGAGCATTCTTTGCCAGACCTCACCTCTGATCAGAGGCAAAGTATGAGAGCCATTAGCAAAGGAGACGGGCCAACCATGAAGTATCTAGAAAGGAATGCCCCAAAGAAAAGGAAATATCAATCCCCGAATAAACAATCAGTTCAATCTGCTGCCAAGGAATTCCTTGAGAAAGCAGCACGAGAGATTCTTGGTGATAATGAAGGTGGTCTGAAGGGACCTATACAGATCAGCAGTTCAGATGAAGAGGATGTATCCATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

208

Amino Acids

23.13

Weight (kDa)

7.83

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25080
fragaria_vesca	FvH4_2g41170 FvH4_2g41170
malus_domestica	MD08G1055900.v1.1
prunus_persica	Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1
pyrus_communis	pycom08g04590
rosa_chinensis	RchiOBHm_Chr6g0299361
rosa_laevigata	RLG00000011439
rosa_multiflora	Rmu_sc0016112.1_g000001 Rmu_ssc0000374.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168760
rosa_rugosa	Rorug06G0287400
rosa_samantha	Rh6AG399100 Rh6BG407500 Rh6CG413400 Rh6DG400300
rosa_wichuraiana	Rw6G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AatII	GACGTC	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	323
AccII	CGCG	1 cut(s)	147
AciI	CCGC	3 cut(s)	134, 137, 145
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	590
AcyI	GRCGYC	2 cut(s)	63, 111
AgsI	TTSAA	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	5 cut(s)	12, 280, 308, 347, 621
AluI	AGCT	5 cut(s)	12, 280, 308, 347, 621
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	417
Alw44I	GTGCAC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	174, 428
ApaLI	GTGCAC	1 cut(s)	208
ApeKI	GCWGC	4 cut(s)	157, 344, 509, 533
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	428, 575
AsuHPI	GGTGA	2 cut(s)	373, 563
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	4 cut(s)	144, 356, 496, 545
BccI	CCATC	2 cut(s)	28, 240
BciVI	GTATCC	1 cut(s)	622
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	6 cut(s)	134, 137, 158, 345, 510, 534
BlsI	GCNGC	6 cut(s)	135, 138, 159, 346, 511, 535
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	428, 575
BmiI	GGNNCC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpmI	CTGGAG	2 cut(s)	74, 234
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	3 cut(s)	217, 302, 545
BsaHI	GRCGYC	2 cut(s)	63, 111
BsaJI	CCNNGG	3 cut(s)	54, 171, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	3 cut(s)	91, 217, 236
BseDI	CCNNGG	3 cut(s)	54, 171, 513
BseGI	GGATG	2 cut(s)	232, 613
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	3 cut(s)	91, 217, 236
BseRI	GAGGAG	3 cut(s)	77, 176, 287
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	4 cut(s)	144, 356, 496, 545
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	2 cut(s)	145, 320
BshFI	GGCC	2 cut(s)	176, 430
BsiEI	CGRYCG	2 cut(s)	145, 320
BsiHKAI	GWGCWC	1 cut(s)	212
BslFI	GGGAC	2 cut(s)	74, 588
BsmAI	GTCTC	1 cut(s)	417
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	74, 588
BsmI	GAATGC	2 cut(s)	364, 460
BsnI	GGCC	2 cut(s)	176, 430
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	388, 585
BspACI	CCGC	3 cut(s)	134, 137, 145
BspANI	GGCC	2 cut(s)	176, 430
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	576
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	91, 217, 236
BssECI	CCNNGG	3 cut(s)	54, 171, 513
BssMI	GATC	2 cut(s)	388, 585
BssNI	GRCGYC	2 cut(s)	63, 111
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	3 cut(s)	54, 171, 513
Bst2BI	CACGAG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	194, 597
BstACI	GRCGYC	2 cut(s)	63, 111
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	232, 613
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	391, 588
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	388, 585
BstMCI	CGRYCG	2 cut(s)	145, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 370
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	4 cut(s)	144, 356, 496, 545
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	176, 430
BtsCI	GGATG	2 cut(s)	232, 613
BtsIMutI	CAGTG	3 cut(s)	36, 48, 210
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	428, 575
CseI	GACGC	1 cut(s)	119
CviAII	CATG	2 cut(s)	436, 616
CviJI	RGCY	9 cut(s)	12, 176, 202, 280, 308, 347, 410, 430, 621
CviKI_1	RGCY	9 cut(s)	12, 176, 202, 280, 308, 347, 410, 430, 621
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	390, 587
DpnII	GATC	2 cut(s)	388, 585
DraI	TTTAAA	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	194, 597
EarI	CTCTTC	2 cut(s)	194, 597
Eco130I	CCWWGG	3 cut(s)	54, 171, 513
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	3 cut(s)	54, 171, 513
ErhI	CCWWGG	3 cut(s)	54, 171, 513
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	2 cut(s)	439, 619
FaiI	YATR	7 cut(s)	17, 164, 270, 404, 437, 581, 617
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	2 cut(s)	74, 588
FatI	CATG	2 cut(s)	435, 615
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	6 cut(s)	134, 137, 158, 345, 510, 534
FokI	GGATG	2 cut(s)	219, 620
Fsp4HI	GCNGC	6 cut(s)	134, 137, 158, 345, 510, 534
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	6 cut(s)	134, 137, 158, 345, 510, 534
GsuI	CTGGAG	2 cut(s)	74, 234
HaeIII	GGCC	2 cut(s)	176, 430
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	2 cut(s)	63, 111
Hin1II	CATG	2 cut(s)	439, 619
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	26, 38, 544
HphI	GGTGA	2 cut(s)	373, 563
Hpy166II	GTNNAC	3 cut(s)	210, 220, 324
Hpy188I	TCNGA	4 cut(s)	388, 393, 570, 598
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	3 cut(s)	210, 220, 324
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	554, 565
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	2 cut(s)	63, 117
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 370
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	63, 117
Hsp92I	GRCGYC	2 cut(s)	63, 111
Hsp92II	CATG	2 cut(s)	439, 619
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	388, 585
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	6 cut(s)	36, 104, 198, 249, 326, 387
Lsp1109I	GCAGC	4 cut(s)	144, 356, 496, 545
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	2 cut(s)	63, 117
MalI	GATC	2 cut(s)	390, 587
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	388, 585
MboII	GAAGA	3 cut(s)	58, 181, 614
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	263, 518
MseI	TTAA	3 cut(s)	228, 260, 332
Mva1269I	GAATGC	2 cut(s)	364, 460
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	163, 370
NdeII	GATC	2 cut(s)	388, 585
NlaIII	CATG	2 cut(s)	439, 619
NlaIV	GGNNCC	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	2 cut(s)	364, 460
PfeI	GAWTC	3 cut(s)	26, 38, 544
PkrI	GCNGC	6 cut(s)	135, 138, 159, 346, 511, 535
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	428, 575
PspPPI	RGGWCCY	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	228, 260, 332
SatI	GCNGC	6 cut(s)	134, 137, 158, 345, 510, 534
Sau3AI	GATC	2 cut(s)	388, 585
Sau96I	GGNCC	2 cut(s)	428, 575
SduI	GDGCHC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	3 cut(s)	196, 281, 524
SmoI	CTYRAG	3 cut(s)	196, 281, 524
Sse9I	AATT	2 cut(s)	263, 518
SsiI	CCGC	3 cut(s)	134, 137, 145
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	3 cut(s)	54, 171, 513
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	2 cut(s)	66, 120
TaqI	TCGA	4 cut(s)	76, 141, 252, 360
TasI	AATT	2 cut(s)	263, 518
TauI	GCSGC	2 cut(s)	136, 139
TfiI	GAWTC	3 cut(s)	26, 38, 544
Tru1I	TTAA	3 cut(s)	228, 260, 332
Tru9I	TTAA	3 cut(s)	228, 260, 332
TscAI	CASTG	3 cut(s)	36, 48, 217
TseI	GCWGC	4 cut(s)	157, 344, 509, 533
TspDTI	ATGAA	4 cut(s)	346, 452, 573, 615
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	36, 48, 217
VneI	GTGCAC	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	1 cut(s)	446
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.