Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010385

Physical Location & Seq

Genomic Coordinates Forward (+)

60470029 .. 60472593

Gene Structure 2565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGGGAAGCAGCAGCAGCAGCAGCTCCATGGTGATACCAGATTCAGTGATGGAGTCAGTAAAGAGAAGCATGGGACATGTAGAGCAAGTAGGAGCCGAGTTGCCCCAATTCTTGGCTCTCTGTTCTGACCCCCAAGTCCTCGCCCAATTGCCGCCTCTTCAGCGTGCCCACTCACTTCTCTTGCTCTCCAATCTCACTACCACTCTATTCACCCTCAGGTTGAGGTGCAGTGGAGTATATGATGACGACCACCGCGTCAACACCGAGCTTGAGAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCATAGATTTGAGCAAAGCACCGTTGCGACCATCCACCACTTTAAATTATCAGGCAGCAACCCGTTTCATTGAGCATTCTCTGCCAGACCTCACCCAAGATCAGAGGCAGGGTATGAGAGATATTAGTAAAGCGGAGGGGAAAAAGATGAAGCATCTGGAAAGGAATGTTCAAAAGAAGAGGAAGTATGAATCACCTAACAGACAATCAGTTCAATCTGCTGCCAAGGATTTTCTAGAGAAAGCTGCTCGTGAGCTTCTTGGTGATGACAATGGTGGTCTTAAGGGACCTCTAAGGGCTGAGTTCTCAGACAGAGATAATCTCAATTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

214

Amino Acids

24.17

Weight (kDa)

8.5

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sas10_Utp3	PF04000	28 - 100	2.6e-07	Sas10/Utp3/C1D family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25080
fragaria_vesca	FvH4_2g41170 FvH4_2g41170
malus_domestica	MD08G1055900.v1.1
prunus_persica	Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1
pyrus_communis	pycom08g04590
rosa_chinensis	RchiOBHm_Chr6g0299361
rosa_laevigata	RLG00000011439
rosa_multiflora	Rmu_sc0016112.1_g000001 Rmu_ssc0000374.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168760
rosa_rugosa	Rorug06G0287400
rosa_samantha	Rh6AG399100 Rh6BG407500 Rh6CG413400 Rh6DG400300
rosa_wichuraiana	Rw6G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	137, 257
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccII	CGCG	1 cut(s)	258
AciI	CCGC	3 cut(s)	155, 256, 443
AcuI	CTGAAG	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	482, 524
AluBI	AGCT	5 cut(s)	27, 271, 301, 554, 565
AluI	AGCT	5 cut(s)	27, 271, 301, 554, 565
ApeKI	GCWGC	8 cut(s)	12, 15, 18, 21, 24, 365, 530, 554
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	5 cut(s)	46, 205, 394, 495, 584
AvaII	GGWCC	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	558
BbvI	GCAGC	8 cut(s)	24, 27, 30, 33, 36, 377, 517, 541
BccI	CCATC	2 cut(s)	46, 349
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	302
BfrI	CTTAAG	1 cut(s)	590
BisI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 155, 366, 531, 555
BlsI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 156, 367, 532, 556
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	2 cut(s)	97, 597
BmsI	GCATC	1 cut(s)	472
BplI	GAGNNNNNCTC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	30, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	30, 534
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	232, 600, 630
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	8 cut(s)	24, 27, 30, 33, 36, 377, 517, 541
BsgI	GTGCAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	258
BslFI	GGGAC	2 cut(s)	90, 609
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	90, 609
BsmI	GAATGC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	409
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	3 cut(s)	155, 256, 443
BspCNI	CTCAG	3 cut(s)	231, 601, 629
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	97, 597
BspTI	CTTAAG	1 cut(s)	590
BssECI	CCNNGG	2 cut(s)	30, 534
BssMI	GATC	1 cut(s)	409
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	2 cut(s)	30, 534
Bst2BI	CACGAG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	2 cut(s)	165, 482
BstAFI	CTTAAG	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	218, 602, 609, 616
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 21, 24, 163, 391
BstNSI	RCATGY	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	8 cut(s)	24, 27, 30, 33, 36, 377, 517, 541
Bsu36I	CCTNAGG	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	54, 238
Cac8I	GCNNGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	596
CseI	GACGC	1 cut(s)	247
CviAII	CATG	3 cut(s)	31, 73, 80
CviJI	RGCY	8 cut(s)	27, 98, 119, 271, 301, 554, 565, 608
CviKI_1	RGCY	8 cut(s)	27, 98, 119, 271, 301, 554, 565, 608
DdeI	CTNAG	4 cut(s)	218, 602, 609, 616
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraI	TTTAAA	1 cut(s)	354
DrdI	GACNNNNNNGTC	2 cut(s)	137, 257
DseDI	GACNNNNNNGTC	2 cut(s)	137, 257
Eam1104I	CTCTTC	2 cut(s)	165, 482
EarI	CTCTTC	2 cut(s)	165, 482
Eco130I	CCWWGG	2 cut(s)	30, 534
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	146
Eco81I	CCTNAGG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	596
EcoT14I	CCWWGG	2 cut(s)	30, 534
ErhI	CCWWGG	2 cut(s)	30, 534
FaeI	CATG	3 cut(s)	34, 76, 83
FaiI	YATR	8 cut(s)	32, 74, 81, 241, 243, 314, 425, 498
FaqI	GGGAC	2 cut(s)	90, 609
FatI	CATG	3 cut(s)	30, 72, 79
Fnu4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 155, 366, 531, 555
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 155, 366, 531, 555
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 155, 366, 531, 555
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	34, 76, 83
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	44, 56, 500
HphI	GGTGA	5 cut(s)	46, 205, 394, 495, 584
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	130, 414, 619
Hpy188III	TCNNGA	4 cut(s)	293, 467, 545, 560
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 21, 24, 163, 391
HpyF3I	CTNAG	4 cut(s)	218, 602, 609, 616
Hsp92II	CATG	3 cut(s)	34, 76, 83
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	2 cut(s)	32, 95
LpnPI	CCDG	7 cut(s)	54, 205, 278, 347, 404, 408, 452
Lsp1109I	GCAGC	8 cut(s)	24, 27, 30, 33, 36, 377, 517, 541
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	545
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	2 cut(s)	152, 499
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	5 cut(s)	110, 149, 284, 355, 634
MlyI	GAGTC	1 cut(s)	65
MseI	TTAA	3 cut(s)	281, 353, 591
MspCI	CTTAAG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	385
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	18, 21, 24, 163, 391
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	3 cut(s)	34, 76, 83
NlaIV	GGNNCC	2 cut(s)	97, 597
NmeAIII	GCCGAG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	83
PciI	ACATGT	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	44, 500
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 156, 367, 532, 556
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	596
PscI	ACATGT	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	596
PspN4I	GGNNCC	2 cut(s)	97, 597
PspPI	GGNCC	1 cut(s)	596
PspPPI	RGGWCCY	1 cut(s)	596
SaqAI	TTAA	3 cut(s)	281, 353, 591
SatI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 155, 366, 531, 555
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	272, 590
SmoI	CTYRAG	2 cut(s)	272, 590
Sse9I	AATT	5 cut(s)	110, 149, 284, 355, 634
SsiI	CCGC	3 cut(s)	155, 256, 443
SspMI	CTAG	1 cut(s)	545
StyI	CCWWGG	2 cut(s)	30, 534
TaaI	ACNGT	1 cut(s)	333
TasI	AATT	5 cut(s)	110, 149, 284, 355, 634
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	44, 500
Tru1I	TTAA	3 cut(s)	281, 353, 591
Tru9I	TTAA	3 cut(s)	281, 353, 591
TscAI	CASTG	2 cut(s)	54, 238
TseI	GCWGC	8 cut(s)	12, 15, 18, 21, 24, 365, 530, 554
TspDTI	ATGAA	4 cut(s)	301, 367, 473, 513
TspRI	CASTG	2 cut(s)	54, 238
Van91I	CCANNNNNTGG	1 cut(s)	115
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.