RLG00000011439

Nuclear nucleic acid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010385
Physical Location & Seq
Reverse (-)
9464231 .. 9465307
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011439

Sequence Viewer

Length: 639 bp
ATGGAGGAGGGAAGCAGCAGCTCCATGGTGATACCAGATTCAGTGATGGAGTCAGTAAAGAGAAGCATGGGACATCTAGAACAAGTAGGAGCCGAGTTGCCCCAATTCTTGGCTCTCTGTTCTGACCCCCAAGTCCTCGCCCAATTGCCGCCTCTTCAGCGTGCCCACTCGCTTCTCTTGCTCTCCAATCTCACTACCACTCTATTCACCCTCAGGTTGAGGTGCAGTGGAGCATACGATGACGACCACCGCGTCAACACCGAGCTTGAGAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCATAGATTTGAGCAAAGCACCGTTGCGACCATCCACCACTTTAAATTATCAGGCAGCAACCCGTTTCATCGAGCATTCTCTGCCAGACCTCACCCAAGATCAGAGGCAGAGTATGAGAGATATTAGTAAAGCGGAGGGGAAAAAGATGAAGCATCTGGAAAGGAATGTTCAAAAGAAGAGGAAGTATGAATCACCTAACAGACAATCAGTTCAATCTGCTGCCAAGGATTTTCTAGAGAAAGCTGCTCGTGAGCTTCTTGGTGATGACAATGGTGGTCTTAAGGGACCTCTAAGGGCTGAGTTCTCAGACAGAGATAATCTGAATTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

213

Amino Acids

24.05

Weight (kDa)

7.79

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 26 - 98 3.4e-07 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 251
AccB7I CCANNNNNTGG 1 cut(s) 109
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 149, 250, 437
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 2 cut(s) 476, 518
AluBI AGCT 5 cut(s) 21, 265, 295, 548, 559
AluI AGCT 5 cut(s) 21, 265, 295, 548, 559
ApeKI GCWGC 5 cut(s) 15, 18, 359, 524, 548
ApoI RAATTY 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 5 cut(s) 40, 199, 388, 489, 578
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 166
BauI CACGAG 1 cut(s) 552
BbvI GCAGC 5 cut(s) 27, 30, 371, 511, 535
BccI CCATC 2 cut(s) 40, 343
BfaI CTAG 2 cut(s) 77, 539
BfmI CTRYAG 1 cut(s) 296
BfrI CTTAAG 1 cut(s) 584
BisI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
BlsI GCNGC 6 cut(s) 17, 20, 150, 361, 526, 550
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 91, 591
BmsI GCATC 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 24, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse21I CCTNAGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 24, 528
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 226, 594, 624
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 5 cut(s) 27, 30, 371, 511, 535
BsgI GTGCAG 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 252
BslFI GGGAC 2 cut(s) 84, 603
BslI CCNNNNNNNGG 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 84, 603
BsmI GAATGC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 403
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 3 cut(s) 149, 250, 437
BspCNI CTCAG 3 cut(s) 225, 595, 623
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 91, 591
BspTI CTTAAG 1 cut(s) 584
BssECI CCNNGG 2 cut(s) 24, 528
BssMI GATC 1 cut(s) 403
BssSI CACGAG 1 cut(s) 552
BssT1I CCWWGG 2 cut(s) 24, 528
Bst2BI CACGAG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 2 cut(s) 159, 476
BstAFI CTTAAG 1 cut(s) 584
BstAPI GCANNNNNTGC 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 4 cut(s) 212, 596, 603, 610
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 335
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 3 cut(s) 157, 178, 385
BstSFI CTRYAG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 5 cut(s) 27, 30, 371, 511, 535
Bsu36I CCTNAGG 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 48, 232
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 1 cut(s) 241
CviAII CATG 2 cut(s) 25, 67
CviJI RGCY 8 cut(s) 21, 92, 113, 265, 295, 548, 559, 602
CviKI_1 RGCY 8 cut(s) 21, 92, 113, 265, 295, 548, 559, 602
DdeI CTNAG 4 cut(s) 212, 596, 603, 610
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DraI TTTAAA 1 cut(s) 348
DrdI GACNNNNNNGTC 2 cut(s) 131, 251
DseDI GACNNNNNNGTC 2 cut(s) 131, 251
Eam1104I CTCTTC 2 cut(s) 159, 476
EarI CTCTTC 2 cut(s) 159, 476
Eco130I CCWWGG 2 cut(s) 24, 528
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 590
EcoT14I CCWWGG 2 cut(s) 24, 528
ErhI CCWWGG 2 cut(s) 24, 528
FaeI CATG 2 cut(s) 28, 70
FaiI YATR 6 cut(s) 26, 68, 235, 308, 419, 492
FaqI GGGAC 2 cut(s) 84, 603
FatI CATG 2 cut(s) 24, 66
Fnu4HI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
FokI GGATG 1 cut(s) 322
Fsp4HI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
FspBI CTAG 2 cut(s) 77, 539
GluI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
HgaI GACGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 28, 70
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 38, 50, 494
HphI GGTGA 5 cut(s) 40, 199, 388, 489, 578
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 124, 408, 613, 627
Hpy188III TCNNGA 5 cut(s) 77, 287, 461, 539, 554
Hpy8I GTNNAC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 178, 385
HpyF3I CTNAG 4 cut(s) 212, 596, 603, 610
Hsp92II CATG 2 cut(s) 28, 70
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 3 cut(s) 26, 89, 230
LpnPI CCDG 6 cut(s) 48, 199, 272, 341, 402, 446
Lsp1109I GCAGC 5 cut(s) 27, 30, 371, 511, 535
LweI GCATC 1 cut(s) 466
MaeI CTAG 2 cut(s) 77, 539
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 2 cut(s) 146, 493
MfeI CAATTG 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 5 cut(s) 104, 143, 278, 349, 628
MlyI GAGTC 1 cut(s) 59
MseI TTAA 3 cut(s) 275, 347, 585
MspCI CTTAAG 1 cut(s) 584
MunI CAATTG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 379
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 157, 178, 385
NcoI CCATGG 1 cut(s) 24
NdeII GATC 1 cut(s) 403
NlaIII CATG 2 cut(s) 28, 70
NlaIV GGNNCC 2 cut(s) 91, 591
NmeAIII GCCGAG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 38, 494
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 6 cut(s) 17, 20, 150, 361, 526, 550
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 91, 591
PspPI GGNCC 1 cut(s) 590
PspPPI RGGWCCY 1 cut(s) 590
SaqAI TTAA 3 cut(s) 275, 347, 585
SatI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 590
SmlI CTYRAG 2 cut(s) 266, 584
SmoI CTYRAG 2 cut(s) 266, 584
Sse9I AATT 5 cut(s) 104, 143, 278, 349, 628
SsiI CCGC 3 cut(s) 149, 250, 437
SspMI CTAG 2 cut(s) 77, 539
StyI CCWWGG 2 cut(s) 24, 528
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 375
TasI AATT 5 cut(s) 104, 143, 278, 349, 628
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 2 cut(s) 38, 494
Tru1I TTAA 3 cut(s) 275, 347, 585
Tru9I TTAA 3 cut(s) 275, 347, 585
TscAI CASTG 2 cut(s) 48, 232
TseI GCWGC 5 cut(s) 15, 18, 359, 524, 548
TspDTI ATGAA 4 cut(s) 295, 361, 467, 507
TspRI CASTG 2 cut(s) 48, 232
Van91I CCANNNNNTGG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 628
XbaI TCTAGA 2 cut(s) 76, 538
XspI CTAG 2 cut(s) 77, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.