Rmu_sc0016112.1_g000001

Nuclear nucleic acid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016112.1
OG0010385
Physical Location & Seq
Reverse (-)
303 .. 898
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016112.1_g000001.1.cds

Sequence Viewer

Length: 371 bp
agaggttaaaattgtatcaggagaagctacagcgtttcatagatttgagcaaagcaccgttgcgaccatccaccactttaaattatcaggcagcaacccgtttcatcgagcactctctgcctgacctcacccaagatcagaggcagggtatgagagatattagtaaagcggaggggaaaaagatgaagcatgtggaaaggaatgttcaaaagaagaggaagtatgaatcacctaacagacaatcagttcaatctgctgccaaggattttctagagaaagctgctcgagagcttcttggtgatgacaatggtggtcttaagggacctctaagggctgagttctcagacagagataatctgaatttggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

122

Amino Acids

14.1

Weight (kDa)

9.77

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 360
AflII CTTAAG 1 cut(s) 316
AgsI TTSAA 2 cut(s) 208, 250
AluBI AGCT 3 cut(s) 27, 280, 291
AluI AGCT 3 cut(s) 27, 280, 291
Alw21I GWGCWC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 91, 256, 280
ApoI RAATTY 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 3 cut(s) 120, 221, 310
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 103, 243, 267
BccI CCATC 1 cut(s) 75
BfaI CTAG 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 28
BfrI CTTAAG 1 cut(s) 316
BisI GCNGC 3 cut(s) 92, 257, 281
BlsI GCNGC 3 cut(s) 93, 258, 282
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 326, 356
BseXI GCAGC 3 cut(s) 103, 243, 267
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 2 cut(s) 327, 355
BspLI GGNNCC 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 208
BstAFI CTTAAG 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 328, 335, 342
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 103, 243, 267
BtsCI GGATG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 322
CviAII CATG 1 cut(s) 190
CviJI RGCY 4 cut(s) 27, 280, 291, 334
CviKI_1 RGCY 4 cut(s) 27, 280, 291, 334
DdeI CTNAG 3 cut(s) 328, 335, 342
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
DraI TTTAAA 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 40, 151, 191, 224
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 92, 257, 281
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 92, 257, 281
FspBI CTAG 1 cut(s) 271
GluI GCNGC 3 cut(s) 92, 257, 281
Hin1II CATG 1 cut(s) 193
HinfI GANTC 1 cut(s) 226
HphI GGTGA 3 cut(s) 120, 221, 310
Hpy188I TCNGA 3 cut(s) 140, 345, 359
Hpy188III TCNNGA 3 cut(s) 19, 271, 286
HpyCH4III ACNGT 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 328, 335, 342
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 4 cut(s) 4, 73, 130, 134
Lsp1109I GCAGC 3 cut(s) 103, 243, 267
MaeI CTAG 1 cut(s) 271
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 3 cut(s) 10, 81, 360
MnlI CCTC 5 cut(s) 134, 136, 165, 209, 335
MseI TTAA 3 cut(s) 7, 79, 317
MspCI CTTAAG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 323
NspI RCATGY 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 284
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 3 cut(s) 93, 258, 282
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
SaqAI TTAA 3 cut(s) 7, 79, 317
SatI GCNGC 3 cut(s) 92, 257, 281
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 113
SetI ASST 7 cut(s) 7, 29, 128, 234, 282, 293, 327
SfcI CTRYAG 1 cut(s) 28
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 284, 316
SmoI CTYRAG 2 cut(s) 284, 316
Sse9I AATT 3 cut(s) 10, 81, 360
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 107, 285
TasI AATT 3 cut(s) 10, 81, 360
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 3 cut(s) 7, 79, 317
Tru9I TTAA 3 cut(s) 7, 79, 317
TseI GCWGC 3 cut(s) 91, 256, 280
TspDTI ATGAA 4 cut(s) 27, 93, 199, 239
Vha464I CTTAAG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 360
XbaI TCTAGA 1 cut(s) 270
XceI RCATGY 1 cut(s) 193
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.