Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010385

Physical Location & Seq

Genomic Coordinates Forward (+)

59691185 .. 59693097

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG399100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAGGGCAGCAGCAGCAGCTCCATGGTGATACCAGATTCAGTGATGGAGTCAGTGAAGAGAAGCATGGGACATGTAGAACAAGTAGGAGCCGAGTTGCCCCAATTCTTGGCTCTCTGTTCTGACCCCCAAGTCCTCGCCCAATTGCCGCCTCTTCAGCGTGCCCACTCACTTCTCTTGCTCTCCAATCTCACTACCACTCTATTCACCCTCAGGTTGAGGTGCAGTGGAGTATACGATGACGACCACCGCGTCAACACCGAGCTTGAGAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCATAGATTTGAGCAAAGCACCGTTGCGACCATCCACCACTTTAAATTATCAGGCAGCAACCCGTTTCATCGAGCATTCTCTGCCAGACCTCACCCAAGATCAGAGGCAGGGTATGAGAGATATTAGTAAAGCGGAGGGGAAAAAGATGAAGCATCTGGAAAGGAATATTCAAAAGAAGAGGAAGTATGAATCACCTAACAGACAATCAGTTCAATCTGCTGCCAAGGATTTTCTAGAGAAAGCTGCTCAGATAATCTCAATTTGGACTGATTTCCTCTTTTTTTGCTGGATTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

200

Amino Acids

22.94

Weight (kDa)

8.9

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sas10_Utp3	PF04000	26 - 98	2.2e-07	Sas10/Utp3/C1D family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25080
fragaria_vesca	FvH4_2g41170 FvH4_2g41170
malus_domestica	MD08G1055900.v1.1
prunus_persica	Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1
pyrus_communis	pycom08g04590
rosa_chinensis	RchiOBHm_Chr6g0299361
rosa_laevigata	RLG00000011439
rosa_multiflora	Rmu_sc0016112.1_g000001 Rmu_ssc0000374.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168760
rosa_rugosa	Rorug06G0287400
rosa_samantha	Rh6AG399100 Rh6BG407500 Rh6CG413400 Rh6DG400300
rosa_wichuraiana	Rw6G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	131, 251
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	252
AciI	CCGC	3 cut(s)	149, 250, 437
AcuI	CTGAAG	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	476, 518
AluBI	AGCT	4 cut(s)	21, 265, 295, 548
AluI	AGCT	4 cut(s)	21, 265, 295, 548
ApeKI	GCWGC	7 cut(s)	9, 12, 15, 18, 359, 524, 548
AsuHPI	GGTGA	4 cut(s)	40, 199, 388, 489
AxyI	CCTNAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	166
BbvI	GCAGC	7 cut(s)	21, 24, 27, 30, 371, 511, 535
BccI	CCATC	2 cut(s)	40, 343
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	8 cut(s)	10, 13, 16, 19, 149, 360, 525, 549
BlsI	GCNGC	8 cut(s)	11, 14, 17, 20, 150, 361, 526, 550
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	24, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	24, 528
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	226, 566
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	7 cut(s)	21, 24, 27, 30, 371, 511, 535
BsgI	GTGCAG	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	403
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	149, 250, 437
BspCNI	CTCAG	2 cut(s)	225, 565
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	24, 528
BssMI	GATC	1 cut(s)	403
BssNAI	GTATAC	1 cut(s)	235
BssT1I	CCWWGG	2 cut(s)	24, 528
Bst1107I	GTATAC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	3 cut(s)	53, 159, 476
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	212, 552
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 18, 157, 385, 597
BstNSI	RCATGY	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	7 cut(s)	21, 24, 27, 30, 371, 511, 535
BstZ17I	GTATAC	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	335
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	48, 60, 232
Cac8I	GCNNGC	1 cut(s)	162
CseI	GACGC	1 cut(s)	241
CviAII	CATG	3 cut(s)	25, 67, 74
CviJI	RGCY	6 cut(s)	21, 92, 113, 265, 295, 548
CviKI_1	RGCY	6 cut(s)	21, 92, 113, 265, 295, 548
DdeI	CTNAG	2 cut(s)	212, 552
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
DraI	TTTAAA	1 cut(s)	348
DrdI	GACNNNNNNGTC	2 cut(s)	131, 251
DseDI	GACNNNNNNGTC	2 cut(s)	131, 251
Eam1104I	CTCTTC	3 cut(s)	53, 159, 476
EarI	CTCTTC	3 cut(s)	53, 159, 476
Eco130I	CCWWGG	2 cut(s)	24, 528
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	212
EcoT14I	CCWWGG	2 cut(s)	24, 528
ErhI	CCWWGG	2 cut(s)	24, 528
FaeI	CATG	3 cut(s)	28, 70, 77
FaiI	YATR	7 cut(s)	26, 68, 75, 235, 308, 419, 492
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	3 cut(s)	24, 66, 73
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	8 cut(s)	10, 13, 16, 19, 149, 360, 525, 549
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	8 cut(s)	10, 13, 16, 19, 149, 360, 525, 549
FspBI	CTAG	1 cut(s)	539
GluI	GCNGC	8 cut(s)	10, 13, 16, 19, 149, 360, 525, 549
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	28, 70, 77
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	38, 50, 494
HphI	GGTGA	4 cut(s)	40, 199, 388, 489
Hpy166II	GTNNAC	2 cut(s)	235, 256
Hpy188I	TCNGA	3 cut(s)	124, 408, 555
Hpy188III	TCNNGA	3 cut(s)	287, 461, 539
Hpy8I	GTNNAC	2 cut(s)	235, 256
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 18, 157, 385, 597
HpyF3I	CTNAG	2 cut(s)	212, 552
Hsp92II	CATG	3 cut(s)	28, 70, 77
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	2 cut(s)	26, 89
LpnPI	CCDG	8 cut(s)	48, 199, 272, 341, 398, 402, 446, 577
Lsp1109I	GCAGC	7 cut(s)	21, 24, 27, 30, 371, 511, 535
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	539
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	3 cut(s)	70, 146, 493
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	5 cut(s)	104, 143, 278, 349, 564
MlyI	GAGTC	1 cut(s)	59
MseI	TTAA	2 cut(s)	275, 347
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	379
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	5 cut(s)	15, 18, 157, 385, 597
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	28, 70, 77
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	77
PciI	ACATGT	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	38, 494
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	8 cut(s)	11, 14, 17, 20, 150, 361, 526, 550
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	275, 347
SatI	GCNGC	8 cut(s)	10, 13, 16, 19, 149, 360, 525, 549
Sau3AI	GATC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	9 cut(s)	23, 218, 224, 267, 275, 297, 396, 502, 550
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	5 cut(s)	104, 143, 278, 349, 564
SsiI	CCGC	3 cut(s)	149, 250, 437
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	539
StyI	CCWWGG	2 cut(s)	24, 528
TaaI	ACNGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	375
TasI	AATT	5 cut(s)	104, 143, 278, 349, 564
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	38, 494
Tru1I	TTAA	2 cut(s)	275, 347
Tru9I	TTAA	2 cut(s)	275, 347
TscAI	CASTG	3 cut(s)	48, 60, 232
TseI	GCWGC	7 cut(s)	9, 12, 15, 18, 359, 524, 548
TspDTI	ATGAA	4 cut(s)	295, 361, 467, 507
TspRI	CASTG	3 cut(s)	48, 60, 232
Van91I	CCANNNNNTGG	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	538
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.