Rroxscaffold_7G00168760

Nuclear nucleic acid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010385
Physical Location & Seq
Reverse (-)
9562320 .. 9570678
8359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168760.1

Sequence Viewer

Length: 636 bp
ATGGAGGGAAGCAGCAGCTCCATGGTGATACCAGATTCAGTGATGGAGTCAGTAAAGAGAAGCATGGGACATCTAGAACAAGTGGGAGCCGAGTTGCCCCAATTCTTGGCTCTCTGTTCTGACCCCCAAGTCCTCGCCCAATTGCCGCCTCTTCAGCGTGCCCACTCACTTCTCTTGCTCTCCAATCTCACTACCACTCTATTCACCCTCAGGTTGAGGTGCAGTGGAGTATACGATGACGACCACCGCGTCAACACCGAGCTTGAGAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCATAGATTTGAGCAAAGCACCGTTGCGACCATCCACCACTTTAAATTATCAGGCAGCAACCCGTTTCATCGAGCATTCTCTGCCAGACCTCACCCAAGATCAGAGGCAGAGTATGAGAGATATTAGTAAAGCGGAGGGGAAAAAGATGAAGCATCTGGAAAGGAATGTTCAAAAGAAGAGGAAGTATGAATCACCTAACAGACAATCAGTTCAATCTGCTGCCAAGGATTTTCTAGAGAAAGCTGCACGTGAGCTTCTTGGTGATGACAATGGTGGTCTTAAGGGACCTCTAAGGGCTGAGTTCTCAGACAGAGATAATCTGAATTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

211

Amino Acids

23.95

Weight (kDa)

8.5

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 25 - 97 2.2e-07 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 248
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 249
AciI CCGC 3 cut(s) 146, 247, 434
AcsI RAATTY 1 cut(s) 625
AcuI CTGAAG 1 cut(s) 137
AcvI CACGTG 1 cut(s) 551
AfiI CCNNNNNNNGG 1 cut(s) 106
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 2 cut(s) 473, 515
AluBI AGCT 5 cut(s) 18, 262, 292, 545, 556
AluI AGCT 5 cut(s) 18, 262, 292, 545, 556
ApeKI GCWGC 5 cut(s) 12, 15, 356, 521, 545
ApoI RAATTY 1 cut(s) 625
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 5 cut(s) 37, 196, 385, 486, 575
AvaII GGWCC 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 551
BbvI GCAGC 5 cut(s) 24, 27, 368, 508, 532
BccI CCATC 2 cut(s) 37, 340
BfaI CTAG 2 cut(s) 74, 536
BfmI CTRYAG 1 cut(s) 293
BfrI CTTAAG 1 cut(s) 581
BisI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
BlsI GCNGC 6 cut(s) 14, 17, 147, 358, 523, 547
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 88, 588
BmsI GCATC 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 21, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 21, 525
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 3 cut(s) 223, 591, 621
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 5 cut(s) 24, 27, 368, 508, 532
BsgI GTGCAG 2 cut(s) 241, 531
Bsh1236I CGCG 1 cut(s) 249
BslFI GGGAC 2 cut(s) 81, 600
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 81, 600
BsmI GAATGC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 400
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 146, 247, 434
BspCNI CTCAG 3 cut(s) 222, 592, 620
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 88, 588
BspTI CTTAAG 1 cut(s) 581
BssECI CCNNGG 2 cut(s) 21, 525
BssMI GATC 1 cut(s) 400
BssNAI GTATAC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 21, 525
Bst1107I GTATAC 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 156, 473
BstAFI CTTAAG 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 382
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 4 cut(s) 209, 593, 600, 607
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 332
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 154, 382
BstSFI CTRYAG 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 5 cut(s) 24, 27, 368, 508, 532
BstZ17I GTATAC 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 332
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 45, 229
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 587
CseI GACGC 1 cut(s) 238
CviAII CATG 2 cut(s) 22, 64
CviJI RGCY 8 cut(s) 18, 89, 110, 262, 292, 545, 556, 599
CviKI_1 RGCY 8 cut(s) 18, 89, 110, 262, 292, 545, 556, 599
DdeI CTNAG 4 cut(s) 209, 593, 600, 607
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DraI TTTAAA 1 cut(s) 345
DrdI GACNNNNNNGTC 2 cut(s) 128, 248
DseDI GACNNNNNNGTC 2 cut(s) 128, 248
Eam1104I CTCTTC 2 cut(s) 156, 473
EarI CTCTTC 2 cut(s) 156, 473
Eco130I CCWWGG 2 cut(s) 21, 525
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 137
Eco72I CACGTG 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 587
EcoT14I CCWWGG 2 cut(s) 21, 525
ErhI CCWWGG 2 cut(s) 21, 525
FaeI CATG 2 cut(s) 25, 67
FaiI YATR 6 cut(s) 23, 65, 232, 305, 416, 489
FaqI GGGAC 2 cut(s) 81, 600
FatI CATG 2 cut(s) 21, 63
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
FspBI CTAG 2 cut(s) 74, 536
GluI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
HgaI GACGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 25, 67
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 35, 47, 491
HphI GGTGA 5 cut(s) 37, 196, 385, 486, 575
Hpy166II GTNNAC 2 cut(s) 232, 253
Hpy188I TCNGA 4 cut(s) 121, 405, 610, 624
Hpy188III TCNNGA 4 cut(s) 74, 284, 458, 536
Hpy8I GTNNAC 2 cut(s) 232, 253
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 2 cut(s) 222, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 382
HpyF3I CTNAG 4 cut(s) 209, 593, 600, 607
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 2 cut(s) 25, 67
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 23, 86
LpnPI CCDG 6 cut(s) 45, 196, 269, 338, 399, 443
Lsp1109I GCAGC 5 cut(s) 24, 27, 368, 508, 532
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 74, 536
MaeII ACGT 1 cut(s) 550
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 2 cut(s) 143, 490
MfeI CAATTG 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 5 cut(s) 101, 140, 275, 346, 625
MlyI GAGTC 1 cut(s) 56
MseI TTAA 3 cut(s) 272, 344, 582
MspCI CTTAAG 1 cut(s) 581
MunI CAATTG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 376
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 154, 382
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 400
NlaIII CATG 2 cut(s) 25, 67
NlaIV GGNNCC 2 cut(s) 88, 588
NmeAIII GCCGAG 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 35, 491
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 6 cut(s) 14, 17, 147, 358, 523, 547
PleI GAGTC 1 cut(s) 55
PmaCI CACGTG 1 cut(s) 551
PmlI CACGTG 1 cut(s) 551
PpsI GAGTC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 551
PpuMI RGGWCCY 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 587
PspCI CACGTG 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 88, 588
PspPI GGNCC 1 cut(s) 587
PspPPI RGGWCCY 1 cut(s) 587
SaqAI TTAA 3 cut(s) 272, 344, 582
SatI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 293
SinI GGWCC 1 cut(s) 587
SmlI CTYRAG 2 cut(s) 263, 581
SmoI CTYRAG 2 cut(s) 263, 581
Sse9I AATT 5 cut(s) 101, 140, 275, 346, 625
SsiI CCGC 3 cut(s) 146, 247, 434
SspMI CTAG 2 cut(s) 74, 536
StyI CCWWGG 2 cut(s) 21, 525
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 1 cut(s) 553
TaqI TCGA 1 cut(s) 372
TasI AATT 5 cut(s) 101, 140, 275, 346, 625
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 2 cut(s) 35, 491
Tru1I TTAA 3 cut(s) 272, 344, 582
Tru9I TTAA 3 cut(s) 272, 344, 582
TscAI CASTG 2 cut(s) 45, 229
TseI GCWGC 5 cut(s) 12, 15, 356, 521, 545
TspDTI ATGAA 4 cut(s) 292, 358, 464, 504
TspRI CASTG 2 cut(s) 45, 229
Van91I CCANNNNNTGG 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 625
XbaI TCTAGA 2 cut(s) 73, 535
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 2 cut(s) 74, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.