Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010385

Physical Location & Seq

Genomic Coordinates Forward (+)

59828325 .. 59829414

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG413400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGGGAAGCAGCAGCAGCAGCTCCATGGTGATACCAGACTCAGTGATGGAGTCAGTAAAGAGAAGCATGGGACATGTAGAGCAAGTAGGAGCCGAGTTGCCCCAATTCTTGGCTCTCTGTTCTGACCCCCAAGTCCTCGCCCAATTGCCGCCTCTTCAGCGTGCCCACTCACTTCTCTTGCTCTCCAATCTCACTACCACTCTATTCACCCTCAGGTTGAGGTGCAGTGGAGTATACGATGACGACCACCGCGTCAACACCGAGCTTGAGAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCATAGATTTGAGCAAAGCACCGTTGCGACCATCCACCACTTTAAATTATCAGGCAGCAACCCGTTTCATCGAGCATTCTCTGCCAGACCTCACCCAAGATCAGAGGCAGGGTATGAGAGATATTAGTAAAGCGGAGGGGAAAAAGATGAAGCATCTGGAAAGGAATGTTCAAAGGAAGAGGAAGTATGAATCACCTAACAGACAATCAGTTCAATCTGCTGCCAAGGATTTTCTAGAGAAAGCTGCTCGTGAGCTTCTTGGTGATGACAATGGTGGTCTTAAGGGACCTCTAAGGGCTGAGTTCTCAGACAGAGATAATCTCAATTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

213

Amino Acids

24.11

Weight (kDa)

8.52

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sas10_Utp3	PF04000	27 - 99	2.6e-07	Sas10/Utp3/C1D family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25080
fragaria_vesca	FvH4_2g41170 FvH4_2g41170
malus_domestica	MD08G1055900.v1.1
prunus_persica	Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1
pyrus_communis	pycom08g04590
rosa_chinensis	RchiOBHm_Chr6g0299361
rosa_laevigata	RLG00000011439
rosa_multiflora	Rmu_sc0016112.1_g000001 Rmu_ssc0000374.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168760
rosa_rugosa	Rorug06G0287400
rosa_samantha	Rh6AG399100 Rh6BG407500 Rh6CG413400 Rh6DG400300
rosa_wichuraiana	Rw6G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	134, 254
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	152, 253, 440
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	479, 521
AluBI	AGCT	5 cut(s)	24, 268, 298, 551, 562
AluI	AGCT	5 cut(s)	24, 268, 298, 551, 562
ApeKI	GCWGC	7 cut(s)	12, 15, 18, 21, 362, 527, 551
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	5 cut(s)	43, 202, 391, 492, 581
AvaII	GGWCC	1 cut(s)	593
AxyI	CCTNAGG	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	555
BbvI	GCAGC	7 cut(s)	24, 27, 30, 33, 374, 514, 538
BccI	CCATC	2 cut(s)	43, 346
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	299
BfrI	CTTAAG	1 cut(s)	587
BisI	GCNGC	8 cut(s)	13, 16, 19, 22, 152, 363, 528, 552
BlsI	GCNGC	8 cut(s)	14, 17, 20, 23, 153, 364, 529, 553
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	94, 594
BmsI	GCATC	1 cut(s)	469
BplI	GAGNNNNNCTC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	27, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	27, 531
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	4 cut(s)	57, 229, 597, 627
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	7 cut(s)	24, 27, 30, 33, 374, 514, 538
BsgI	GTGCAG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	87, 606
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	87, 606
BsmI	GAATGC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	152, 253, 440
BspCNI	CTCAG	4 cut(s)	56, 228, 598, 626
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	94, 594
BspTI	CTTAAG	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	27, 531
BssMI	GATC	1 cut(s)	406
BssNAI	GTATAC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	27, 531
Bst1107I	GTATAC	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	2 cut(s)	162, 479
BstAFI	CTTAAG	1 cut(s)	587
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	5 cut(s)	43, 215, 599, 606, 613
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 21, 160, 388
BstNSI	RCATGY	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	7 cut(s)	24, 27, 30, 33, 374, 514, 538
BstZ17I	GTATAC	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	51, 235
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	593
CseI	GACGC	1 cut(s)	244
CviAII	CATG	3 cut(s)	28, 70, 77
CviJI	RGCY	8 cut(s)	24, 95, 116, 268, 298, 551, 562, 605
CviKI_1	RGCY	8 cut(s)	24, 95, 116, 268, 298, 551, 562, 605
DdeI	CTNAG	5 cut(s)	43, 215, 599, 606, 613
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
DraI	TTTAAA	1 cut(s)	351
DrdI	GACNNNNNNGTC	2 cut(s)	134, 254
DseDI	GACNNNNNNGTC	2 cut(s)	134, 254
Eam1104I	CTCTTC	2 cut(s)	162, 479
EarI	CTCTTC	2 cut(s)	162, 479
Eco130I	CCWWGG	2 cut(s)	27, 531
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	593
EcoT14I	CCWWGG	2 cut(s)	27, 531
ErhI	CCWWGG	2 cut(s)	27, 531
FaeI	CATG	3 cut(s)	31, 73, 80
FaiI	YATR	7 cut(s)	29, 71, 78, 238, 311, 422, 495
FaqI	GGGAC	2 cut(s)	87, 606
FatI	CATG	3 cut(s)	27, 69, 76
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	8 cut(s)	13, 16, 19, 22, 152, 363, 528, 552
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	8 cut(s)	13, 16, 19, 22, 152, 363, 528, 552
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	8 cut(s)	13, 16, 19, 22, 152, 363, 528, 552
HgaI	GACGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	31, 73, 80
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	41, 53, 497
HphI	GGTGA	5 cut(s)	43, 202, 391, 492, 581
Hpy166II	GTNNAC	2 cut(s)	238, 259
Hpy188I	TCNGA	3 cut(s)	127, 411, 616
Hpy188III	TCNNGA	4 cut(s)	290, 464, 542, 557
Hpy8I	GTNNAC	2 cut(s)	238, 259
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 21, 160, 388
HpyF3I	CTNAG	5 cut(s)	43, 215, 599, 606, 613
Hsp92II	CATG	3 cut(s)	31, 73, 80
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	29, 92
LpnPI	CCDG	7 cut(s)	51, 202, 275, 344, 401, 405, 449
Lsp1109I	GCAGC	7 cut(s)	24, 27, 30, 33, 374, 514, 538
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	542
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	149, 496
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	5 cut(s)	107, 146, 281, 352, 631
MlyI	GAGTC	2 cut(s)	35, 62
MseI	TTAA	3 cut(s)	278, 350, 588
MspCI	CTTAAG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	382
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	18, 21, 160, 388
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	3 cut(s)	31, 73, 80
NlaIV	GGNNCC	2 cut(s)	94, 594
NmeAIII	GCCGAG	1 cut(s)	121
NspI	RCATGY	1 cut(s)	80
PciI	ACATGT	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	8 cut(s)	14, 17, 20, 23, 153, 364, 529, 553
PleI	GAGTC	2 cut(s)	35, 61
PpsI	GAGTC	2 cut(s)	35, 61
PpuMI	RGGWCCY	1 cut(s)	593
PscI	ACATGT	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	593
PspN4I	GGNNCC	2 cut(s)	94, 594
PspPI	GGNCC	1 cut(s)	593
PspPPI	RGGWCCY	1 cut(s)	593
SaqAI	TTAA	3 cut(s)	278, 350, 588
SatI	GCNGC	8 cut(s)	13, 16, 19, 22, 152, 363, 528, 552
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	2 cut(s)	35, 62
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	269, 587
SmoI	CTYRAG	2 cut(s)	269, 587
Sse9I	AATT	5 cut(s)	107, 146, 281, 352, 631
SsiI	CCGC	3 cut(s)	152, 253, 440
SspMI	CTAG	1 cut(s)	542
StyI	CCWWGG	2 cut(s)	27, 531
TaaI	ACNGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	378
TasI	AATT	5 cut(s)	107, 146, 281, 352, 631
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	3 cut(s)	278, 350, 588
Tru9I	TTAA	3 cut(s)	278, 350, 588
TscAI	CASTG	2 cut(s)	51, 235
TseI	GCWGC	7 cut(s)	12, 15, 18, 21, 362, 527, 551
TspDTI	ATGAA	4 cut(s)	298, 364, 470, 510
TspRI	CASTG	2 cut(s)	51, 235
Van91I	CCANNNNNTGG	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	593
XbaI	TCTAGA	1 cut(s)	541
XceI	RCATGY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.