Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010385

Physical Location & Seq

Genomic Coordinates Reverse (-)

35066609 .. 35069830

Gene Structure 3222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G394400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAAGGAAGCTCGATAGTTCCAGATTCAGTGATGGAATCAGTGAAGAGAACCTTGAGCCATGTAGAAGAAGTTGGACTTCACTTCCACCAAGTCTTGTCTCTCTCCGACCCTGACCTCCTCGCCGAATCGCCGCCTCTCGAGCGAGCTCAGTCCCTGCTCTTGCTAGCCAGGGCCACTACCACCCTCTTCACCGTGAGGTTGAGGTGTAGTGGAGTAGACCCGGATGACCATCCCGTCAAATCCGAGCTTGAGAGATTAAGATTGTATCAGGAGAAGCTACAGCGGTTTGTGGATTTGAGTAAAGCACCATTGCGACCATCTACTACTTTAAATTATCAGGCAGCTACCCGTTTCATCGAGCATTCTTTGCCAGACCTTACACCTGATCAGAAGCGAAGTATGAGAGACATTAGTAGAGGAGAGGGGTCAAACATTAAGTATCTAGAAAGGAAGGTTCAAAAGAAGAGGAAATATCAATCCCCTAATAAACAATCAGTTCAATCTGCTGCCAATGAGTTCCTTGAGAAAGCAGCCCGTGAAATTCTTGGTGATAGTGAAGGAGGTCGTAAGGGACCTCTACAGGCCAATAGTTCAGATGAAGAGAACGTGCCTATGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

208

Amino Acids

23.27

Weight (kDa)

6.98

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25080
fragaria_vesca	FvH4_2g41170 FvH4_2g41170
malus_domestica	MD08G1055900.v1.1
prunus_persica	Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1 Prupe.1G394400_v2.0.a1
pyrus_communis	pycom08g04590
rosa_chinensis	RchiOBHm_Chr6g0299361
rosa_laevigata	RLG00000011439
rosa_multiflora	Rmu_sc0016112.1_g000001 Rmu_ssc0000374.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168760
rosa_rugosa	Rorug06G0287400
rosa_samantha	Rh6AG399100 Rh6BG407500 Rh6CG413400 Rh6DG400300
rosa_wichuraiana	Rw6G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	2 cut(s)	134, 286
AcsI	RAATTY	1 cut(s)	543
AgsI	TTSAA	2 cut(s)	461, 503
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	5 cut(s)	12, 149, 250, 280, 347
AluI	AGCT	5 cut(s)	12, 149, 250, 280, 347
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	105, 402
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	174, 585
ApeKI	GCWGC	3 cut(s)	344, 509, 533
ApoI	RAATTY	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	174, 575
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	184, 563
AsuNHI	GCTAGC	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	3 cut(s)	356, 496, 545
BccI	CCATC	3 cut(s)	28, 240, 328
BciT130I	CCWGG	1 cut(s)	172
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	105, 402
BfaI	CTAG	2 cut(s)	167, 446
BfmI	CTRYAG	2 cut(s)	281, 581
BisI	GCNGC	4 cut(s)	134, 345, 510, 534
BlsI	GCNGC	4 cut(s)	135, 346, 511, 535
Bme1390I	CCNGG	2 cut(s)	172, 224
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	174, 575
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	172, 224
BmtI	GCTAGC	1 cut(s)	170
BpuEI	CTTGAG	3 cut(s)	76, 272, 545
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	232, 232
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	2 cut(s)	110, 435
BseXI	GCAGC	3 cut(s)	356, 496, 545
BshFI	GGCC	2 cut(s)	176, 587
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	139, 588
BsmAI	GTCTC	2 cut(s)	105, 402
BsmFI	GGGAC	2 cut(s)	139, 588
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	176, 587
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	2 cut(s)	134, 286
BspANI	GGCC	2 cut(s)	176, 587
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	576
BspOI	GCTAGC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	4 cut(s)	41, 194, 461, 597
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	147, 168
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	232, 232
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	2 cut(s)	105, 402
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 370
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	170, 222
BstSFI	CTRYAG	2 cut(s)	281, 581
BstV1I	GCAGC	3 cut(s)	356, 496, 545
BsuRI	GGCC	2 cut(s)	176, 587
BtsCI	GGATG	2 cut(s)	232, 232
BtsIMutI	CAGTG	2 cut(s)	36, 48
Cac8I	GCNNGC	2 cut(s)	147, 168
CaiI	CAGNNNCTG	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	174, 575
CviAII	CATG	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DraI	TTTAAA	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	4 cut(s)	41, 194, 461, 597
EarI	CTCTTC	4 cut(s)	41, 194, 461, 597
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	63, 404, 617
FalI	AAGNNNNNCTT	4 cut(s)	38, 70, 63, 95
FaqI	GGGAC	2 cut(s)	139, 588
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	134, 345, 510, 534
FokI	GGATG	2 cut(s)	219, 239
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	4 cut(s)	134, 345, 510, 534
FspBI	CTAG	2 cut(s)	167, 446
GluI	GCNGC	4 cut(s)	134, 345, 510, 534
HaeIII	GGCC	2 cut(s)	176, 587
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	1 cut(s)	65
HinfI	GANTC	3 cut(s)	26, 38, 128
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	184, 563
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	109, 247, 393, 598
Hpy188III	TCNNGA	4 cut(s)	23, 140, 272, 446
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	448, 554
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 370
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	388
Lsp1109I	GCAGC	3 cut(s)	356, 496, 545
MaeI	CTAG	2 cut(s)	167, 446
MaeII	ACGT	1 cut(s)	609
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	58, 80, 181, 478, 614
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	2 cut(s)	334, 543
MmeI	TCCRAC	2 cut(s)	55, 132
MseI	TTAA	3 cut(s)	260, 332, 438
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	172, 224
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	142, 370
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	388
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	576
PaeR7I	CTCGAG	1 cut(s)	140
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	26, 38, 128
PkrI	GCNGC	4 cut(s)	135, 346, 511, 535
PpuMI	RGGWCCY	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	174, 575
PspPPI	RGGWCCY	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	260, 332, 438
SatI	GCNGC	4 cut(s)	134, 345, 510, 534
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	2 cut(s)	174, 575
ScrFI	CCNGG	2 cut(s)	172, 224
SduI	GDGCHC	1 cut(s)	151
SfcI	CTRYAG	2 cut(s)	281, 581
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	4 cut(s)	55, 140, 251, 524
SmoI	CTYRAG	4 cut(s)	55, 140, 251, 524
Sse9I	AATT	2 cut(s)	334, 543
SsiI	CCGC	2 cut(s)	134, 286
SspMI	CTAG	2 cut(s)	167, 446
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	170, 222
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	14, 141, 360
TasI	AATT	2 cut(s)	334, 543
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	3 cut(s)	26, 38, 128
Tru1I	TTAA	3 cut(s)	260, 332, 438
Tru9I	TTAA	3 cut(s)	260, 332, 438
TscAI	CASTG	2 cut(s)	36, 48
TseI	GCWGC	3 cut(s)	344, 509, 533
TspDTI	ATGAA	2 cut(s)	346, 615
TspRI	CASTG	2 cut(s)	36, 48
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	543
XbaI	TCTAGA	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	2 cut(s)	167, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.