Rh6DG400300

Nuclear nucleic acid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010385
Physical Location & Seq
Forward (+)
58948593 .. 58949643
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG400300.1

Sequence Viewer

Length: 639 bp
ATGGAGGGAGGCAGCAGCTCCACGGTGATACCAGATTCAGTGATGGAGTCAGTAAAGAGAAGCATGGGACATGTAGAACAAGTAGGAGCCGAGTTGCCCCAATTCTTGTCTCTCTGTTCTGACCCCCAAGTCCTCGCCCAATTGCCGCCTCTTCAGCGTGCCCACTCACTTCTCTTGCTCTCCAATCTCACTACCACTCTATTCACCCTCAGGTTGAGGTGCAGTGGAGTATACGATGACGACCACCGCGTCAACACCGAGCTTGAGAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCATAGATTTGAGCAAAGCACCATTGCGACCATCCACCACTTTAAATTATCAGGCAGCAACCCGTTTCATCGAGCATTCTCTGCCAGACCTCACCCAAGATCAGAGGCAGGGTATGAGAGATATTAGTAAAGCGGAGGGGAAAAAGATGAAGTATCTGGAAAGGAATGTTCAAAAGAAGAGGAAGTATGAATCACCTAACAGACAATCAGTTCAATCTGCTGCCAAGGATTTCCTAGAGAAAGCTGCTCGTGAGCTTCTTGGTGATGACAATGGTGGTGGTCTTAAGGGACCTCTAAGGGCTGAGTTCTCAGACAGAGATAATCTGAATTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

212

Amino Acids

23.94

Weight (kDa)

8.49

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 25 - 97 1.7e-07 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 248
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 249
AciI CCGC 3 cut(s) 146, 247, 434
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 137
AflII CTTAAG 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 2 cut(s) 473, 515
AluBI AGCT 5 cut(s) 18, 262, 292, 545, 556
AluI AGCT 5 cut(s) 18, 262, 292, 545, 556
Alw26I GTCTC 1 cut(s) 114
ApeKI GCWGC 5 cut(s) 12, 15, 356, 521, 545
ApoI RAATTY 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 5 cut(s) 37, 196, 385, 486, 575
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 163
BauI CACGAG 1 cut(s) 549
BbvI GCAGC 5 cut(s) 24, 27, 368, 508, 532
BccI CCATC 2 cut(s) 37, 340
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 1 cut(s) 293
BfrI CTTAAG 1 cut(s) 584
BisI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
BlsI GCNGC 6 cut(s) 14, 17, 147, 358, 523, 547
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 88, 591
BpuEI CTTGAG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 21, 525
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 323
BseDI CCNNGG 2 cut(s) 21, 525
BseGI GGATG 1 cut(s) 332
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 3 cut(s) 223, 594, 624
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 5 cut(s) 24, 27, 368, 508, 532
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 249
BslFI GGGAC 2 cut(s) 81, 603
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 81, 603
BsmI GAATGC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 3 cut(s) 146, 247, 434
BspCNI CTCAG 3 cut(s) 222, 595, 623
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 88, 591
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 21, 525
BssMI GATC 1 cut(s) 400
BssNAI GTATAC 1 cut(s) 232
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 525
Bst1107I GTATAC 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 156, 473
BstAFI CTTAAG 1 cut(s) 584
BstAPI GCANNNNNTGC 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 4 cut(s) 209, 596, 603, 610
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 332
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 154, 382
BstNSI RCATGY 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 5 cut(s) 24, 27, 368, 508, 532
BstZ17I GTATAC 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 332
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 45, 229
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 2 cut(s) 64, 71
CviJI RGCY 7 cut(s) 18, 89, 262, 292, 545, 556, 602
CviKI_1 RGCY 7 cut(s) 18, 89, 262, 292, 545, 556, 602
DdeI CTNAG 4 cut(s) 209, 596, 603, 610
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DraI TTTAAA 1 cut(s) 345
DrdI GACNNNNNNGTC 2 cut(s) 128, 248
DseDI GACNNNNNNGTC 2 cut(s) 128, 248
Eam1104I CTCTTC 2 cut(s) 156, 473
EarI CTCTTC 2 cut(s) 156, 473
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 137
Eco81I CCTNAGG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 2 cut(s) 67, 74
FaiI YATR 6 cut(s) 65, 72, 232, 305, 416, 489
FaqI GGGAC 2 cut(s) 81, 603
FatI CATG 2 cut(s) 63, 70
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
FspBI CTAG 1 cut(s) 536
GluI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
HgaI GACGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 67, 74
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 35, 47, 491
HphI GGTGA 5 cut(s) 37, 196, 385, 486, 575
Hpy166II GTNNAC 2 cut(s) 232, 253
Hpy188I TCNGA 4 cut(s) 121, 405, 613, 627
Hpy188III TCNNGA 3 cut(s) 284, 458, 551
Hpy8I GTNNAC 2 cut(s) 232, 253
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 382
HpyF3I CTNAG 4 cut(s) 209, 596, 603, 610
Hsp92II CATG 2 cut(s) 67, 74
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 23, 86
LpnPI CCDG 7 cut(s) 45, 196, 269, 338, 395, 399, 443
Lsp1109I GCAGC 5 cut(s) 24, 27, 368, 508, 532
MaeI CTAG 1 cut(s) 536
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 2 cut(s) 143, 490
MfeI CAATTG 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 5 cut(s) 101, 140, 275, 346, 628
MlyI GAGTC 1 cut(s) 56
MseI TTAA 3 cut(s) 272, 344, 585
MspCI CTTAAG 1 cut(s) 584
MunI CAATTG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 376
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 154, 382
NdeII GATC 1 cut(s) 400
NlaIII CATG 2 cut(s) 67, 74
NlaIV GGNNCC 2 cut(s) 88, 591
NmeAIII GCCGAG 1 cut(s) 115
NspI RCATGY 1 cut(s) 74
PciI ACATGT 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 35, 491
PkrI GCNGC 6 cut(s) 14, 17, 147, 358, 523, 547
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 590
PscI ACATGT 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 88, 591
PspPI GGNCC 1 cut(s) 590
PspPPI RGGWCCY 1 cut(s) 590
SaqAI TTAA 3 cut(s) 272, 344, 585
SatI GCNGC 6 cut(s) 13, 16, 146, 357, 522, 546
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 293
SinI GGWCC 1 cut(s) 590
SmlI CTYRAG 2 cut(s) 263, 584
SmoI CTYRAG 2 cut(s) 263, 584
Sse9I AATT 5 cut(s) 101, 140, 275, 346, 628
SsiI CCGC 3 cut(s) 146, 247, 434
SspMI CTAG 1 cut(s) 536
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 372
TasI AATT 5 cut(s) 101, 140, 275, 346, 628
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 2 cut(s) 35, 491
Tru1I TTAA 3 cut(s) 272, 344, 585
Tru9I TTAA 3 cut(s) 272, 344, 585
TscAI CASTG 2 cut(s) 45, 229
TseI GCWGC 5 cut(s) 12, 15, 356, 521, 545
TspDTI ATGAA 4 cut(s) 292, 358, 464, 504
TspRI CASTG 2 cut(s) 45, 229
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 628
XceI RCATGY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.