Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Forward (+)

29178674 .. 29182744

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3303 bp

ATGGCATTATCCGTACTGTGCTGCTCTTCAGCTATGTGCTGCTGTACTAGTGACACCACCACTAGTAGGATATTTGGTCCTCTTTTACACCCACTACCCAAATCCAAGTTAAAGGTGTGGCCTTGTCCCAAGAGGAACACACGCTTGGGTTTGTGTGCCTTTGTCATCAAAAGGCCGCACCAGCAGGTGGTGGTCAACACCAAAAAGCCCAGAAATTCAGTGTCCTCTGAGGAAGTTGTGAGGGTGCTAAAGTCCATTTCAGACCCGACCTCTGCCTTCTCATTCTTCAAGTCCATTGCTGACTTGCCCACTGTGCTTCACACCACTGAAACTTGCAATTACATGCTTCAACTCCTTGGGGTTCATAGGAGGGTGGGCGATATGGCTTTTGTCTTTGATTTAATGCAGAGGCATATCATTAACAGGAGTCTGGACACTTACCTCACCATATTTAAGGGTCTTAATATCAGAGGTGGAATTCGAGCAGCACCCTATGCTCTTCCAAGGTTGCGCAAACATGGCTTCGTCTTGAATGCCTTTTCTTACAATGGCTTGATCTATATGCTTATCCAGTCTGGCTACTGTAGGGAGGCTTTGCAGGTCTACCAAACTATGGTGTCACAAGGTATTAGGCCCAGCCTCAAGACATACTCAGCTCTTATGGTCGCATTGGGAAAGAGAAGGGATGTTCAAGCTGTTATGGGTCTGCTCAAAGAGATGGAAACTTTAGGACTCAGGCCTAATGTTTATACTTTCACTATATGCATTAGAGTACTCGGGAGGGCCGGGAAGATTGATGAGGCCTATCAAATATTCAAGAGGATGGATAACGAGGGATGTGGCCCCGACGTTATCACCTACACTGTTCTCATCGATGCCCTCTGTAATGCAGGTAAACTCGACAATGCCAAGAAGTTGTTTGCAAATATGAAAGCAAGGGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGCGACTGTAAAGACTTGGACACAGTAAGAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTCACTTTCACTATACTAGTCGATTCTTTGTGCAAAGCTGGAAACGTAGATGAAGCATTCAGTATGTTGGATATCATGAGGAAAGAAGGTGTCTCACCAAATCTTCATACCTACAACACATTAATTTGTGGACTTCTGCGGTTATGTAGGTTGGATGAGGCACTTCAGCTCTTCAACAGTATGGATTCTCTTGGTGTTACACCTACTGCTTATACATACATCCTTTTCATCGACTATTATGGGAAGTCTGGTAAGTCGAGAAAAGCTATTGAGGCCTATGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCTTTGTATGGTCTTGCTGAGGAGGGTAGACTTCACGAGGCGAAACATATTTATGATGAGCTTATATACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAGGGTGGGTCAAATAGATGAAGCCATCAAGTTACTCTCAGAGATGGAAAGGAATGGGTGCGAGGCTGATGTCATCATTGTTAATTCGTTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCGGAAAAGCTATTGCAATGTTTGAGAATATGACTGAACAAGGGTGTCCTCCAAATGCAATAACGTTCAACACACTCCTGAATTGCCTTTGCAAGAATGATGAGGTCAATTTGGCCTTGAAAATGCTTTGCAAAATGACCGTGATGAATTGCTGTCCTGATGTTCTGACCTATAATACTATAATTCATGGCTTAATCAGAGAAAACAGAATTGATTATGCATTCTGGTTCTTCCATCAGATGAAGAAACTCCTACTTCCTGATCATATAACATTGTACACCCTCCTTCCCAGTGTTGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTTCTGGGGAGTTTGCGTATCAGGTCGGGGTTCGAGCAGACAAGCCTTTCTGGGAAGAGTTGATTGGAACGGTTATTATTCAAGCTGAAGAAGACCGAGCTGTTTTATTTGCTGAAAGGTTGATTTCTGAGAGAATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTGGGAAAACTCTTGATGCTCAGAATTTGTTTACAAAGTTCACTAGAACTCTTGGAGTTCAGCCAACACTAGAAGCATATAACTGTTTGATCGAGTGGCTTCTTAAAGACCATTTCACTGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCACCTGATGTTTTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGACGAGATGATTTGCAGGGGACACAAGCCTAACACCATAACACACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAAATCTCTATTATGATCTTGTGAGTGGTGATTTTTCTCCTTCTCCTTGTACATATGGCCCTCTCATTGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGATGCAAGCCTAATTGTGCGATCTTCAATATTCTTATAAATGGTTTTTCAAAAGTAGGTGATGTGGAAACTGCTTGCGAGTTGTTTAAAAGGATGATTAAAGAAGGGATAAGACCAGACCTGAAGTCGTTCACCATTCTTGTGGATTGCTACTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTGAGACAAAGTGGCCTTGATCCTGATTCAGTTTCCTACAACCTTATGATTAATGGACTCGGAAGATCACGGAGGATGGAGGAAGCTCTGGTTCTTTATGATGAAATGCGGAAGAGAAGAATTACTCCTGATATTTTCACCTACAATTCATTGATACTCAATCTTGGACTTGTTGGAATGGTGGAGGAAGCAGGAAGGATATATAAAGAACTACTACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTCATTCGGCTGTATAGCACTTCTGGAAATACAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGTTGGAACGTATGCGCAGCTTCCCAATCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1101

Amino Acids

124.18

Weight (kDa)

6.69

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	166 - 275	1.8e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	171 - 227	3.6e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	173 - 267	7.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	178 - 224	6.4e-08	PPR repeat family
PPR_long	PF17177	196 - 327	3.5e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	216 - 259	3.1e-08	PPR repeat family
PPR_3	PF13812	236 - 294	3.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	244 - 275	3.6e-07	PPR repeat
PPR	PF01535	250 - 280	8.6e-06	PPR repeat
PPR_2	PF13041	256 - 296	2.4e-11	PPR repeat family
PPR_3	PF13812	277 - 328	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	279 - 311	1.5e-11	PPR repeat
PPR_2	PF13041	282 - 329	1.1e-15	PPR repeat family
PPR	PF01535	285 - 314	1.4e-06	PPR repeat
PPR_3	PF13812	305 - 357	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	322 - 366	1.3e-08	PPR repeat family
PPR_long	PF17177	334 - 438	1e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	343 - 396	7.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	349 - 381	2.2e-13	PPR repeat
PPR_2	PF13041	352 - 400	9e-17	PPR repeat family
PPR	PF01535	355 - 385	1.9e-07	PPR repeat
PPR_1	PF12854	384 - 415	2.3e-07	PPR repeat
PPR	PF01535	391 - 420	1e-05	PPR repeat
PPR_2	PF13041	391 - 431	9.2e-11	PPR repeat family
PPR_3	PF13812	449 - 504	3.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	457 - 504	1e-09	PPR repeat family
PPR_1	PF12854	489 - 521	1.1e-09	PPR repeat
PPR_2	PF13041	492 - 529	1.2e-11	PPR repeat family
TPR_24	PF23276	494 - 589	1.9e-07	Fungal tetratrico peptide repeats
PPR	PF01535	495 - 525	3.8e-09	PPR repeat
PPR_3	PF13812	515 - 576	3.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	523 - 556	1.6e-06	PPR repeat
PPR_2	PF13041	528 - 574	3.8e-12	PPR repeat family
PPR_1	PF12854	560 - 591	1e-07	PPR repeat
PPR_2	PF13041	562 - 611	6.3e-18	PPR repeat family
TPR_24	PF23276	563 - 658	5e-06	Fungal tetratrico peptide repeats
PPR	PF01535	565 - 595	2.6e-06	PPR repeat
PPR_3	PF13812	586 - 642	1.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	594 - 626	5.3e-10	PPR repeat
PPR_2	PF13041	597 - 645	4.2e-14	PPR repeat family
PPR_1	PF12854	628 - 661	2.2e-09	PPR repeat
PPR_2	PF13041	632 - 675	6.6e-08	PPR repeat family
PPR_2	PF13041	775 - 820	9.4e-14	PPR repeat family
PPR_3	PF13812	797 - 856	6.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	805 - 836	5.3e-06	PPR repeat
PPR_2	PF13041	808 - 857	6.8e-14	PPR repeat family
PPR_3	PF13812	870 - 925	2.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	876 - 906	1.5e-07	PPR repeat
PPR_2	PF13041	878 - 914	5.4e-08	PPR repeat family
PPR	PF01535	882 - 911	5.3e-06	PPR repeat
PPR_long	PF17177	897 - 987	1e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	910 - 941	2.2e-09	PPR repeat
PPR_2	PF13041	916 - 962	3.9e-13	PPR repeat family
PPR	PF01535	917 - 946	1.8e-07	PPR repeat
TPR_24	PF23276	926 - 1045	1.1e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	937 - 996	8.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	945 - 975	6.6e-08	PPR repeat
PPR	PF01535	952 - 981	4.8e-06	PPR repeat
PPR_2	PF13041	952 - 996	4.2e-11	PPR repeat family
PPR_3	PF13812	973 - 1027	1.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	980 - 1012	3.5e-08	PPR repeat
PPR_2	PF13041	983 - 1027	5.9e-16	PPR repeat family
PPR	PF01535	986 - 1016	2.6e-08	PPR repeat
PPR_long	PF17177	990 - 1094	6.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	1042 - 1094	6.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	1050 - 1081	1.8e-06	PPR repeat
PPR_2	PF13041	1053 - 1094	1.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1491, 2765
AarI	CACCTGC	1 cut(s)	175
Acc16I	TGCGCA	2 cut(s)	512, 3282
Acc36I	ACCTGC	3 cut(s)	175, 589, 881
AccB7I	CCANNNNNTGG	2 cut(s)	187, 613
AccI	GTMKAC	3 cut(s)	603, 1420, 3231
AccIII	TCCGGA	1 cut(s)	1474
AciI	CCGC	4 cut(s)	176, 1201, 3034, 3252
AclI	AACGTT	1 cut(s)	1802
AclWI	GGATC	2 cut(s)	2394, 2939
AcoI	YGGCCR	1 cut(s)	1627
AcsI	RAATTY	5 cut(s)	214, 477, 1019, 2202, 2278
AcuI	CTGAAG	4 cut(s)	12, 1211, 2175, 2870
AcvI	CACGTG	1 cut(s)	2255
AfaI	GTAC	6 cut(s)	15, 46, 774, 2015, 2251, 2644
AfiI	CCNNNNNNNGG	6 cut(s)	66, 187, 613, 1344, 2587, 3269
AflIII	ACRYGT	1 cut(s)	2252
AhdI	GACNNNNNGTC	1 cut(s)	2851
AhlI	ACTAGT	3 cut(s)	47, 62, 1078
AjnI	CCWGG	1 cut(s)	2883
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 2115, 2147
Alw21I	GWGCWC	1 cut(s)	2422
Alw26I	GTCTC	2 cut(s)	1159, 2923
Alw44I	GTGCAC	1 cut(s)	2418
AlwI	GGATC	2 cut(s)	2394, 2939
Ama87I	CYCGRG	2 cut(s)	776, 1356
Aor13HI	TCCGGA	1 cut(s)	1474
ApaLI	GTGCAC	1 cut(s)	2418
ApeKI	GCWGC	7 cut(s)	21, 39, 485, 973, 1715, 3255, 3283
ApoI	RAATTY	5 cut(s)	214, 477, 1019, 2202, 2278
AseI	ATTAAT	2 cut(s)	1184, 2976
Asp700I	GAANNNNTTC	1 cut(s)	2855
AspLEI	GCGC	3 cut(s)	513, 2049, 3283
AspS9I	GGNCC	5 cut(s)	77, 633, 783, 842, 2651
AsuC2I	CCSGG	1 cut(s)	787
AsuHPI	GGTGA	8 cut(s)	436, 847, 1149, 2425, 2633, 2798, 2851, 3055
AvaI	CYCGRG	2 cut(s)	776, 1356
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	2422
BauI	CACGAG	1 cut(s)	1427
BbrPI	CACGTG	1 cut(s)	2255
BbsI	GAAGAC	2 cut(s)	2166, 2689
Bbv12I	GWGCWC	1 cut(s)	2422
BbvCI	CCTCAGC	1 cut(s)	1410
BbvI	GCAGC	7 cut(s)	8, 26, 497, 960, 1702, 3242, 3295
BciT130I	CCWGG	1 cut(s)	2885
BclI	TGATCA	1 cut(s)	1999
BcnI	CCSGG	1 cut(s)	787
BcoDI	GTCTC	2 cut(s)	1159, 2923
BcuI	ACTAGT	3 cut(s)	47, 62, 1078
BfaI	CTAG	8 cut(s)	48, 63, 1079, 2210, 2298, 2324, 2582, 2687
BfmI	CTRYAG	3 cut(s)	583, 1510, 3256
BfuAI	ACCTGC	3 cut(s)	175, 589, 881
BisI	GCNGC	9 cut(s)	22, 40, 176, 486, 974, 1716, 3253, 3256, 3284
BlsI	GCNGC	9 cut(s)	23, 41, 177, 487, 975, 1717, 3254, 3257, 3285
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	2 cut(s)	787, 2885
Bme18I	GGWCC	1 cut(s)	77
BmeRI	GACNNNNNGTC	1 cut(s)	2851
BmeT110I	CYCGRG	2 cut(s)	776, 1356
BmgT120I	GGNCC	5 cut(s)	77, 633, 783, 842, 2651
BmiI	GGNNCC	1 cut(s)	844
BmrFI	CCNGG	2 cut(s)	787, 2885
BmrI	ACTGGG	1 cut(s)	2022
BmsI	GCATC	7 cut(s)	865, 2047, 2260, 2443, 2720, 2893, 3208
BmuI	ACTGGG	1 cut(s)	2022
BpiI	GAAGAC	2 cut(s)	2166, 2689
BpmI	CTGGAG	2 cut(s)	1045, 2542
Bpu10I	CCTNAGC	1 cut(s)	1410
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	787
Bsa29I	ATCGAT	1 cut(s)	873
BsaAI	YACGTR	1 cut(s)	2255
BsaJI	CCNNGG	2 cut(s)	355, 503
BsaWI	WCCGGW	1 cut(s)	1474
BsaXI	ACNNNNNCTCC	2 cut(s)	2069, 2099
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 187, 613, 1344, 2587, 3269
Bse1I	ACTGG	5 cut(s)	571, 1716, 2028, 2559, 3151
Bse3DI	GCAATG	3 cut(s)	294, 1761, 2703
BseAI	TCCGGA	1 cut(s)	1474
BseBI	CCWGG	1 cut(s)	2885
BseCI	ATCGAT	1 cut(s)	873
BseDI	CCNNGG	2 cut(s)	355, 503
BseLI	CCNNNNNNNGG	6 cut(s)	66, 187, 613, 1344, 2587, 3269
BseMI	GCAATG	3 cut(s)	294, 1761, 2703
BseMII	CTCAG	7 cut(s)	219, 666, 748, 1401, 1566, 2187, 2288
BseNI	ACTGG	5 cut(s)	571, 1716, 2028, 2559, 3151
BseRI	GAGGAG	3 cut(s)	1427, 2726, 2936
BseSI	GKGCMC	1 cut(s)	2422
BseXI	GCAGC	7 cut(s)	8, 26, 497, 960, 1702, 3242, 3295
BseYI	CCCAGC	1 cut(s)	635
BshVI	ATCGAT	1 cut(s)	873
BsiHKAI	GWGCWC	1 cut(s)	2422
BsiHKCI	CYCGRG	2 cut(s)	776, 1356
BsiSI	CCGG	2 cut(s)	786, 1475
BslFI	GGGAC	3 cut(s)	111, 2532, 3246
BslI	CCNNNNNNNGG	6 cut(s)	66, 187, 613, 1344, 2587, 3269
BsmAI	GTCTC	2 cut(s)	1159, 2923
BsmFI	GGGAC	3 cut(s)	111, 2532, 3246
BsmI	GAATGC	3 cut(s)	538, 1118, 1958
BsoBI	CYCGRG	2 cut(s)	776, 1356
Bsp1286I	GDGCHC	1 cut(s)	2422
Bsp13I	TCCGGA	1 cut(s)	1474
Bsp1407I	TGTACA	3 cut(s)	2013, 2249, 2642
Bsp143I	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
BspACI	CCGC	4 cut(s)	176, 1201, 3034, 3252
BspCNI	CTCAG	7 cut(s)	220, 665, 747, 1402, 1565, 2188, 2287
BspDI	ATCGAT	1 cut(s)	873
BspEI	TCCGGA	1 cut(s)	1474
BspHI	TCATGA	1 cut(s)	1137
BspLI	GGNNCC	1 cut(s)	844
BspMAI	CTGCAG	1 cut(s)	3260
BspMI	ACCTGC	3 cut(s)	175, 589, 881
BspPI	GGATC	2 cut(s)	2394, 2939
BspQI	GCTCTTC	3 cut(s)	31, 504, 1238
BsrDI	GCAATG	3 cut(s)	294, 1761, 2703
BsrGI	TGTACA	3 cut(s)	2013, 2249, 2642
BsrI	ACTGG	5 cut(s)	571, 1716, 2028, 2559, 3151
BssECI	CCNNGG	2 cut(s)	355, 503
BssMI	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
BssSI	CACGAG	1 cut(s)	1427
BssT1I	CCWWGG	2 cut(s)	355, 503
Bst2BI	CACGAG	1 cut(s)	1427
Bst2UI	CCWGG	1 cut(s)	2885
Bst6I	CTCTTC	6 cut(s)	31, 504, 1238, 2118, 2887, 3032
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstAUI	TGTACA	3 cut(s)	2013, 2249, 2642
BstBAI	YACGTR	1 cut(s)	2255
BstC8I	GCNNGC	4 cut(s)	1627, 2413, 2735, 2803
BstDEI	CTNAG	7 cut(s)	228, 652, 734, 1410, 1552, 2196, 2274
BstENI	CCTNNNNNAGG	1 cut(s)	1342
BstHHI	GCGC	3 cut(s)	513, 2049, 3283
BstKTI	GATC	8 cut(s)	558, 2002, 2346, 2389, 2611, 2751, 2947, 2993
BstMAI	GTCTC	2 cut(s)	1159, 2923
BstMBI	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 313, 494, 519, 1334, 1388, 2417
BstNI	CCWGG	1 cut(s)	2885
BstNSI	RCATGY	2 cut(s)	346, 1615
BstSCI	CCNGG	2 cut(s)	785, 2883
BstSFI	CTRYAG	3 cut(s)	583, 1510, 3256
BstSLI	GKGCMC	1 cut(s)	2422
BstV1I	GCAGC	7 cut(s)	8, 26, 497, 960, 1702, 3242, 3295
BstV2I	GAAGAC	2 cut(s)	2166, 2689
BstX2I	RGATCY	1 cut(s)	2386
BstXI	CCANNNNNNTGG	1 cut(s)	2869
BstYI	RGATCY	1 cut(s)	2386
Bsu15I	ATCGAT	1 cut(s)	873
BsuTUI	ATCGAT	1 cut(s)	873
BtsIMutI	CAGTG	8 cut(s)	225, 309, 324, 861, 1468, 2035, 2370, 2478
BveI	ACCTGC	3 cut(s)	175, 589, 881
Cac8I	GCNNGC	4 cut(s)	1627, 2413, 2735, 2803
CciI	TCATGA	1 cut(s)	1137
CfoI	GCGC	3 cut(s)	513, 2049, 3283
Cfr13I	GGNCC	5 cut(s)	77, 633, 783, 842, 2651
ClaI	ATCGAT	1 cut(s)	873
Csp6I	GTAC	6 cut(s)	14, 45, 773, 2014, 2250, 2643
CviAII	CATG	9 cut(s)	343, 518, 1138, 1495, 1612, 1644, 1925, 2459, 3241
CviQI	GTAC	6 cut(s)	14, 45, 773, 2014, 2250, 2643
DdeI	CTNAG	7 cut(s)	228, 652, 734, 1410, 1552, 2196, 2274
DpnI	GATC	8 cut(s)	557, 2001, 2345, 2388, 2610, 2750, 2946, 2992
DpnII	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
DraI	TTTAAA	1 cut(s)	2815
DriI	GACNNNNNGTC	1 cut(s)	2851
EaeI	YGGCCR	1 cut(s)	1627
Eam1104I	CTCTTC	6 cut(s)	31, 504, 1238, 2118, 2887, 3032
Eam1105I	GACNNNNNGTC	1 cut(s)	2851
EarI	CTCTTC	6 cut(s)	31, 504, 1238, 2118, 2887, 3032
Eco130I	CCWWGG	2 cut(s)	355, 503
Eco147I	AGGCCT	3 cut(s)	739, 803, 1337
Eco32I	GATATC	1 cut(s)	1135
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	4 cut(s)	12, 1211, 2175, 2870
Eco72I	CACGTG	1 cut(s)	2255
Eco88I	CYCGRG	2 cut(s)	776, 1356
EcoNI	CCTNNNNNAGG	1 cut(s)	1342
EcoRI	GAATTC	2 cut(s)	477, 1019
EcoRII	CCWGG	1 cut(s)	2883
EcoRV	GATATC	1 cut(s)	1135
EcoT14I	CCWWGG	2 cut(s)	355, 503
EcoT22I	ATGCAT	3 cut(s)	767, 1960, 2703
ErhI	CCWWGG	2 cut(s)	355, 503
FaeI	CATG	9 cut(s)	346, 521, 1141, 1498, 1615, 1647, 1928, 2462, 3244
FaqI	GGGAC	3 cut(s)	111, 2532, 3246
FatI	CATG	9 cut(s)	342, 517, 1137, 1494, 1611, 1643, 1924, 2458, 3240
FauNDI	CATATG	1 cut(s)	2647
FbaI	TGATCA	1 cut(s)	1999
FblI	GTMKAC	3 cut(s)	603, 1420, 3231
Fnu4HI	GCNGC	9 cut(s)	22, 40, 176, 486, 974, 1716, 3253, 3256, 3284
Fsp4HI	GCNGC	9 cut(s)	22, 40, 176, 486, 974, 1716, 3253, 3256, 3284
FspBI	CTAG	8 cut(s)	48, 63, 1079, 2210, 2298, 2324, 2582, 2687
FspI	TGCGCA	2 cut(s)	512, 3282
GlaI	GCGC	3 cut(s)	512, 2048, 3282
GluI	GCNGC	9 cut(s)	22, 40, 176, 486, 974, 1716, 3253, 3256, 3284
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	2 cut(s)	1045, 2542
HapII	CCGG	2 cut(s)	786, 1475
HhaI	GCGC	3 cut(s)	513, 2049, 3283
Hin1II	CATG	9 cut(s)	346, 521, 1141, 1498, 1615, 1647, 1928, 2462, 3244
Hin6I	GCGC	3 cut(s)	511, 2047, 3281
HinP1I	GCGC	3 cut(s)	511, 2047, 3281
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	2379
HinfI	GANTC	8 cut(s)	427, 732, 1085, 1247, 1478, 2216, 2951, 2982
HpaII	CCGG	2 cut(s)	786, 1475
HphI	GGTGA	8 cut(s)	436, 847, 1149, 2425, 2633, 2798, 2851, 3055
Hpy99I	CGWCG	1 cut(s)	851
HpyAV	CCTTC	8 cut(s)	286, 675, 1142, 1660, 2033, 2643, 2825, 3114
HpyCH4IV	ACGT	5 cut(s)	849, 1107, 1802, 2254, 3275
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 313, 494, 519, 1334, 1388, 2417
HpyF3I	CTNAG	7 cut(s)	228, 652, 734, 1410, 1552, 2196, 2274
HpySE526I	ACGT	5 cut(s)	849, 1107, 1802, 2254, 3275
Hsp92II	CATG	9 cut(s)	346, 521, 1141, 1498, 1615, 1647, 1928, 2462, 3244
HspAI	GCGC	3 cut(s)	511, 2047, 3281
Kpn2I	TCCGGA	1 cut(s)	1474
Ksp22I	TGATCA	1 cut(s)	1999
Kzo9I	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
LguI	GCTCTTC	3 cut(s)	31, 504, 1238
LmnI	GCTCC	1 cut(s)	1057
Lsp1109I	GCAGC	7 cut(s)	8, 26, 497, 960, 1702, 3242, 3295
LweI	GCATC	7 cut(s)	865, 2047, 2260, 2443, 2720, 2893, 3208
MaeI	CTAG	8 cut(s)	48, 63, 1079, 2210, 2298, 2324, 2582, 2687
MaeII	ACGT	5 cut(s)	849, 1107, 1802, 2254, 3275
MaeIII	GTNAC	9 cut(s)	50, 618, 958, 1063, 1258, 1483, 1545, 1693, 2445
MalI	GATC	8 cut(s)	557, 2001, 2345, 2388, 2610, 2750, 2946, 2992
MboI	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
MflI	RGATCY	1 cut(s)	2386
MhlI	GDGCHC	1 cut(s)	2422
MlyI	GAGTC	3 cut(s)	436, 726, 2976
MmeI	TCCRAC	6 cut(s)	1110, 1194, 1709, 1720, 3079, 3250
Mph1103I	ATGCAT	3 cut(s)	767, 1960, 2703
MroI	TCCGGA	1 cut(s)	1474
MroXI	GAANNNNTTC	1 cut(s)	2855
MslI	CAYNNNNRTG	3 cut(s)	1443, 1499, 2867
MspI	CCGG	2 cut(s)	786, 1475
MspR9I	CCNGG	2 cut(s)	787, 2885
Mva1269I	GAATGC	3 cut(s)	538, 1118, 1958
MvaI	CCWGG	1 cut(s)	2885
MwoI	GCNNNNNNNGC	7 cut(s)	181, 313, 494, 519, 1334, 1388, 2417
NciI	CCSGG	1 cut(s)	787
NdeI	CATATG	1 cut(s)	2647
NdeII	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
NlaIII	CATG	9 cut(s)	346, 521, 1141, 1498, 1615, 1647, 1928, 2462, 3244
NlaIV	GGNNCC	1 cut(s)	844
NmeAIII	GCCGAG	1 cut(s)	1655
NmuCI	GTSAC	4 cut(s)	50, 618, 1063, 1693
NsbI	TGCGCA	2 cut(s)	512, 3282
NsiI	ATGCAT	3 cut(s)	767, 1960, 2703
NspI	RCATGY	2 cut(s)	346, 1615
PaeR7I	CTCGAG	1 cut(s)	1356
PagI	TCATGA	1 cut(s)	1137
PaqCI	CACCTGC	1 cut(s)	175
PceI	AGGCCT	3 cut(s)	739, 803, 1337
PciSI	GCTCTTC	3 cut(s)	31, 504, 1238
PctI	GAATGC	3 cut(s)	538, 1118, 1958
PdmI	GAANNNNTTC	1 cut(s)	2855
PfeI	GAWTC	5 cut(s)	1085, 1247, 1478, 2216, 2951
PflMI	CCANNNNNTGG	2 cut(s)	187, 613
PkrI	GCNGC	9 cut(s)	23, 41, 177, 487, 975, 1717, 3254, 3257, 3285
PleI	GAGTC	3 cut(s)	435, 726, 2976
PmaCI	CACGTG	1 cut(s)	2255
PmlI	CACGTG	1 cut(s)	2255
PpsI	GAGTC	3 cut(s)	435, 726, 2976
Ppu21I	YACGTR	1 cut(s)	2255
PshBI	ATTAAT	2 cut(s)	1184, 2976
PsiI	TTATAA	2 cut(s)	1491, 2765
Psp1406I	AACGTT	1 cut(s)	1802
Psp6I	CCWGG	1 cut(s)	2883
PspCI	CACGTG	1 cut(s)	2255
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	2883
PspN4I	GGNNCC	1 cut(s)	844
PspPI	GGNCC	5 cut(s)	77, 633, 783, 842, 2651
PspXI	VCTCGAGB	1 cut(s)	1356
PstI	CTGCAG	1 cut(s)	3260
PsuI	RGATCY	1 cut(s)	2386
RsaI	GTAC	6 cut(s)	15, 46, 774, 2015, 2251, 2644
RsaNI	GTAC	6 cut(s)	14, 45, 773, 2014, 2250, 2643
RseI	CAYNNNNRTG	3 cut(s)	1443, 1499, 2867
SapI	GCTCTTC	3 cut(s)	31, 504, 1238
SatI	GCNGC	9 cut(s)	22, 40, 176, 486, 974, 1716, 3253, 3256, 3284
Sau3AI	GATC	8 cut(s)	555, 1999, 2343, 2386, 2608, 2748, 2944, 2990
Sau96I	GGNCC	5 cut(s)	77, 633, 783, 842, 2651
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	3 cut(s)	436, 726, 2976
ScrFI	CCNGG	2 cut(s)	787, 2885
SduI	GDGCHC	1 cut(s)	2422
SfaNI	GCATC	7 cut(s)	865, 2047, 2260, 2443, 2720, 2893, 3208
SfcI	CTRYAG	3 cut(s)	583, 1510, 3256
Sfr274I	CTCGAG	1 cut(s)	1356
SinI	GGWCC	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	1356
SmiMI	CAYNNNNRTG	3 cut(s)	1443, 1499, 2867
SmlI	CTYRAG	2 cut(s)	641, 1356
SmoI	CTYRAG	2 cut(s)	641, 1356
SpeI	ACTAGT	3 cut(s)	47, 62, 1078
SseBI	AGGCCT	3 cut(s)	739, 803, 1337
SsiI	CCGC	4 cut(s)	176, 1201, 3034, 3252
SspI	AATATT	3 cut(s)	813, 1375, 2758
SspMI	CTAG	8 cut(s)	48, 63, 1079, 2210, 2298, 2324, 2582, 2687
StuI	AGGCCT	3 cut(s)	739, 803, 1337
StyD4I	CCNGG	2 cut(s)	785, 2883
StyI	CCWWGG	2 cut(s)	355, 503
TaiI	ACGT	5 cut(s)	852, 1110, 1805, 2257, 3278
TaqII	GACCGA	1 cut(s)	2178
TatI	WGTACW	5 cut(s)	44, 772, 2013, 2249, 2642
TauI	GCSGC	2 cut(s)	178, 3255
TfiI	GAWTC	5 cut(s)	1085, 1247, 1478, 2216, 2951
TscAI	CASTG	8 cut(s)	225, 316, 331, 868, 1468, 2035, 2377, 2485
TseFI	GTSAC	4 cut(s)	50, 618, 1063, 1693
TseI	GCWGC	7 cut(s)	21, 39, 485, 973, 1715, 3255, 3283
Tsp45I	GTSAC	4 cut(s)	50, 618, 1063, 1693
TspGWI	ACGGA	1 cut(s)	3010
TspRI	CASTG	8 cut(s)	225, 316, 331, 868, 1468, 2035, 2377, 2485
Van91I	CCANNNNNTGG	2 cut(s)	187, 613
VneI	GTGCAC	1 cut(s)	2418
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	2 cut(s)	1184, 2976
XagI	CCTNNNNNAGG	1 cut(s)	1342
XapI	RAATTY	5 cut(s)	214, 477, 1019, 2202, 2278
XceI	RCATGY	2 cut(s)	346, 1615
XhoI	CTCGAG	1 cut(s)	1356
XmiI	GTMKAC	3 cut(s)	603, 1420, 3231
XmnI	GAANNNNTTC	1 cut(s)	2855
XspI	CTAG	8 cut(s)	48, 63, 1079, 2210, 2298, 2324, 2582, 2687
ZrmI	AGTACT	1 cut(s)	774
Zsp2I	ATGCAT	3 cut(s)	767, 1960, 2703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.