Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000374.1

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Forward (+)

32132 .. 35470

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000374.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3339 bp

atgtgctgctgtactagtcttgcttatactgacaccaccactagtagtagtagtaggatatttgctataagcacccacactcctcctcctgttctacatccaccaaaatcaaaggtttggccttgtggttcgctgctcaacttgaccagcaagaggaacaaagggttgggtttctgtggctttgtgatcaaaaggccgcagcagcagcaggaggtggtggtggtggtgaagaagaagaacaagcccaaaacttcagtgtcttctgaggaagttgtgacggttctaaagtccatttcagacccgacttctgccttttcattctttaagtccattgctgagttgcctagtgtgattcacaccactgaaacttgcaatcacatgcttcaactcttgggtgttcataggagggtggatgatatggcttttgtgtttgatttgatgcaaaagcatatcgttaacaggagtgtagacacttacctcattatatttaagggtcttaatataagaggtgggattcgagcagccccgtatgctcttggaaggttgcgcaaaaatgggtttatcttgaatgcatattcatacaatggcttgatctatatgcttatccagtctggctattgtagggaggctctggaggtataccaaagggtggtgtcagaaggacttaagccgagcctcaagacttactcagcacttatggtggcattgggaaagagaagggatgttcaaactgttatgggcttactaaaagagatggaaactttggggctcaggcctaatgtttatactttcactatatgcattagagtactcgggagggcggggaaaattgacgaggcatatgaaattttcaagagaatggatgatgagggatgtggccccgacgttatcacttatactgttctcattgatgctctttgtaatgcaggtaaacttgataatgccaagaagttgtttgcaaatatgaaagcaagtggtcataagcctgaccaagtaacctacattacgctgctggacaagtttagtgatagtaaagacttggacacagtaaaagaattctggagtgaaatgaaagctgatggttatgctcctgatgtggttactttcactatactggttgattctttatgcaaagctggaaatgtagatgaggcattcaatatgttggatatcatgaggaaagaaggggtctcaccaaatcttcagacctacaacacgttaatttgtggacttctgcggttatgtaggttgcatgaggcattggaactcttcaacagtatggattctcttggtgttgcacctactgcttacacatacatccttttcatcgactattatggaaagtctggtgactcgggaaaagctattgaggcatttgagaggatgaaaactcgaggcattgttcctaatattgttgcttgtaatgcctctttgtatggtcttgctgaggagggcagacttcaagatgcaaaacatatttatgatgagcttatatacagtgggctttctccggattcagtaacttataacatgatgatgaagtgctatagtaaggtggggcaaatagatgaagccatcaagttactctcagagatggaaagaaatgggtgtgaggctgatgtcatcatagttaattcgttgattgacatgctttacaaggctggccgagtagatgaggcatggcagatgttttacagaatgaaggaaatgaagctcactccaacagttgtgacctacaatacattactggctgcattagggaaagagggtcaagtcagaaaagctattgaaatgtttgagaatatgactgaacaagggtgtcctccaaatgcaataactttcaacacactcctgaatggcctttgcaagaatgatgaggtcaatttggccttgaaaatgctttgcaaaatgaccgtgatgaattgctgtcctgatgttttgacctataacactataatttatggcttaatcagagaaaacagaattgattatgcattctggttcttccatcagatgaagaaacgcctatttcctgatcatataacattgtgcaccctccttccgggtgtagtaaaggatgggcgcattgaggatgctctcaaagttgctgaggacttcgcatatcaggttggagttcaagcagacaggcctttttgggaagatttgattggaggggttgtgattcaagctgaagtagaccgagccattttatttgctgaaaggttgatttctgagaggatttgcctagatgattctgttctgatacctctacttcgatttttgtgtacacgtaggaaaactcttgatgctcagaatttgtttgcaaagtttactggaactcttggagttaagccaactctagaagcatataactgtttgattgaatggcttcttaaagaccatttcactgaacaagcttgggatctattcaaggagatgaaaattgctggctgtgcccctgatgtattcacctacaatttgttacttgatgctcatgggaagtctgggaacatcactgaactctttgaattgtatgacgagatgatttgcaggggatacaagcctaacaccataacacacaatatagttatctccagtcttgtgaaatctgatagcctagacagggctatagatctatattatgatcttgtaagtggtgatttttctccttctccttgtacatacggccctctcatagatggacttttcaagtcgggaagactagaggaagcaatgcatttctttgaggagatggcagaatatggttgtaagcctaattgtgcaatcttcaatattcttataaatggtttttcgaaaacaggtgatgtggaaactgcttgcaagttgtttaaaaggatgattaaagaaggaataagaccagacctgaagtcgtacaccattctcgtggattgctactgccaggctggaagagtggatgatgctttgcactattttgaggagttaagacgaagtggccttgatcctgattcagtttcctacaaccttatgattaatggacttggaagatcacggaggatggaggaagctctcgctctttatgatgaaatgcggactagaagaattactcccgatattttcacctacaattcattaatactcaacctcggacttgttggaatggtggagcaagcaggaaggatttataaagagctacaacttactggtcttgaacctgatgtgtttacttacaatgctcttattcggttgcatagcacttctggaaatccagatgatgcttatgcagtctacaagaacatgatggttggcggctgcagtcccaatgtaggaacatatgcacagcttcccaatcaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1112

Amino Acids

125.09

Weight (kDa)

6.11

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1527, 2801, 3165
Acc16I	TGCGCA	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	649
AccI	GTMKAC	4 cut(s)	468, 639, 2196, 3267
AccIII	TCCGGA	1 cut(s)	1510
AciI	CCGC	5 cut(s)	197, 821, 1237, 3070, 3288
AclWI	GGATC	2 cut(s)	2430, 2975
AcoI	YGGCCR	1 cut(s)	1663
AcsI	RAATTY	3 cut(s)	846, 1055, 2314
AcuI	CTGAAG	4 cut(s)	237, 1187, 2211, 2906
AfaI	GTAC	5 cut(s)	13, 810, 2287, 2680, 2894
AfiI	CCNNNNNNNGG	5 cut(s)	153, 649, 2062, 2623, 3305
AflII	CTTAAG	1 cut(s)	665
AflIII	ACRYGT	2 cut(s)	1215, 2288
AhdI	GACNNNNNGTC	1 cut(s)	2887
AhlI	ACTAGT	2 cut(s)	14, 41
AjnI	CCWGG	1 cut(s)	2919
AjuI	GAANNNNNNNTTGG	4 cut(s)	149, 181, 2151, 2183
Alw21I	GWGCWC	1 cut(s)	2054
Alw26I	GTCTC	1 cut(s)	1195
Alw44I	GTGCAC	1 cut(s)	2050
AlwI	GGATC	2 cut(s)	2430, 2975
Ama87I	CYCGRG	3 cut(s)	812, 1354, 1392
Aor13HI	TCCGGA	1 cut(s)	1510
ApaLI	GTGCAC	1 cut(s)	2050
ApeKI	GCWGC	9 cut(s)	6, 133, 199, 202, 205, 521, 1009, 1751, 3291
ApoI	RAATTY	3 cut(s)	846, 1055, 2314
AseI	ATTAAT	2 cut(s)	3012, 3113
Asp700I	GAANNNNTTC	1 cut(s)	2388
AspLEI	GCGC	2 cut(s)	549, 2085
AspS9I	GGNCC	2 cut(s)	878, 2687
AsuC2I	CCSGG	1 cut(s)	2064
AsuHPI	GGTGA	7 cut(s)	238, 1185, 1361, 2461, 2669, 2834, 3091
AsuII	TTCGAA	1 cut(s)	2813
AvaI	CYCGRG	3 cut(s)	812, 1354, 1392
BaeGI	GKGCMC	2 cut(s)	2054, 2458
BanII	GRGCYC	1 cut(s)	771
BauI	CACGAG	1 cut(s)	2903
BbsI	GAAGAC	2 cut(s)	252, 2725
Bbv12I	GWGCWC	1 cut(s)	2054
BbvCI	CCTCAGC	2 cut(s)	1446, 2109
BbvI	GCAGC	8 cut(s)	120, 211, 214, 217, 533, 996, 1738, 3278
BceAI	ACGGC	1 cut(s)	2701
BciT130I	CCWGG	1 cut(s)	2921
BciVI	GTATCC	1 cut(s)	2549
BclI	TGATCA	2 cut(s)	186, 2035
BcnI	CCSGG	1 cut(s)	2064
BcoDI	GTCTC	1 cut(s)	1195
BcuI	ACTAGT	2 cut(s)	14, 41
BfaI	CTAG	8 cut(s)	15, 42, 345, 2246, 2360, 2618, 2723, 3075
BfmI	CTRYAG	3 cut(s)	1546, 2628, 3292
BfrI	CTTAAG	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	2549
BglII	AGATCT	1 cut(s)	2632
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	2 cut(s)	2064, 2921
BmeRI	GACNNNNNGTC	1 cut(s)	2887
BmeT110I	CYCGRG	3 cut(s)	812, 1354, 1392
BmgT120I	GGNCC	2 cut(s)	878, 2687
BmiI	GGNNCC	1 cut(s)	880
BmrFI	CCNGG	2 cut(s)	2064, 2921
BmsI	GCATC	8 cut(s)	429, 901, 1456, 2083, 2296, 2479, 2929, 3244
BpiI	GAAGAC	2 cut(s)	252, 2725
BpmI	CTGGAG	3 cut(s)	653, 1081, 2578
Bpu10I	CCTNAGC	3 cut(s)	770, 1446, 2109
Bpu14I	TTCGAA	1 cut(s)	2813
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	2064
BsaAI	YACGTR	1 cut(s)	2291
BsaI	GGTCTC	1 cut(s)	1195
BsaJI	CCNNGG	1 cut(s)	3124
BsaWI	WCCGGW	1 cut(s)	1510
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 70, 94, 100, 2163, 2193
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 649, 2062, 2623, 3305
Bse1I	ACTGG	6 cut(s)	607, 1119, 1752, 2338, 2595, 3187
Bse3DI	GCAATG	2 cut(s)	330, 2739
BseAI	TCCGGA	1 cut(s)	1510
BseBI	CCWGG	1 cut(s)	2921
BseDI	CCNNGG	1 cut(s)	3124
BseLI	CCNNNNNNNGG	5 cut(s)	153, 649, 2062, 2623, 3305
BseMI	GCAATG	2 cut(s)	330, 2739
BseMII	CTCAG	9 cut(s)	255, 327, 702, 784, 1437, 1602, 2100, 2223, 2324
BseNI	ACTGG	6 cut(s)	607, 1119, 1752, 2338, 2595, 3187
BseRI	GAGGAG	5 cut(s)	72, 75, 1463, 2762, 2972
BseSI	GKGCMC	2 cut(s)	2054, 2458
BseXI	GCAGC	8 cut(s)	120, 211, 214, 217, 533, 996, 1738, 3278
BsiHKAI	GWGCWC	1 cut(s)	2054
BsiHKCI	CYCGRG	3 cut(s)	812, 1354, 1392
BsiSI	CCGG	2 cut(s)	1511, 2063
BslFI	GGGAC	1 cut(s)	3282
BslI	CCNNNNNNNGG	5 cut(s)	153, 649, 2062, 2623, 3305
BsmAI	GTCTC	1 cut(s)	1195
BsmFI	GGGAC	1 cut(s)	3282
BsmI	GAATGC	3 cut(s)	574, 1154, 1994
Bso31I	GGTCTC	1 cut(s)	1195
BsoBI	CYCGRG	3 cut(s)	812, 1354, 1392
Bsp119I	TTCGAA	1 cut(s)	2813
Bsp1286I	GDGCHC	3 cut(s)	771, 2054, 2458
Bsp13I	TCCGGA	1 cut(s)	1510
Bsp1407I	TGTACA	2 cut(s)	2285, 2678
Bsp143I	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
BspACI	CCGC	5 cut(s)	197, 821, 1237, 3070, 3288
BspCNI	CTCAG	9 cut(s)	256, 328, 701, 783, 1438, 1601, 2101, 2224, 2323
BspEI	TCCGGA	1 cut(s)	1510
BspHI	TCATGA	1 cut(s)	1173
BspLI	GGNNCC	1 cut(s)	880
BspMAI	CTGCAG	1 cut(s)	3296
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	2 cut(s)	2430, 2975
BspT104I	TTCGAA	1 cut(s)	2813
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	1195
BsrDI	GCAATG	2 cut(s)	330, 2739
BsrGI	TGTACA	2 cut(s)	2285, 2678
BsrI	ACTGG	6 cut(s)	607, 1119, 1752, 2338, 2595, 3187
BssECI	CCNNGG	1 cut(s)	3124
BssMI	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
BssNAI	GTATAC	1 cut(s)	640
BssSI	CACGAG	1 cut(s)	2903
Bst1107I	GTATAC	1 cut(s)	640
Bst2BI	CACGAG	1 cut(s)	2903
Bst2UI	CCWGG	1 cut(s)	2921
Bst4CI	ACNGT	9 cut(s)	280, 733, 901, 1048, 1277, 1499, 1726, 1915, 2375
Bst6I	CTCTTC	2 cut(s)	1274, 2923
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstAUI	TGTACA	2 cut(s)	2285, 2678
BstBAI	YACGTR	1 cut(s)	2291
BstBI	TTCGAA	1 cut(s)	2813
BstC8I	GCNNGC	4 cut(s)	1663, 2449, 2839, 3150
BstDEI	CTNAG	9 cut(s)	264, 336, 688, 770, 1446, 1588, 2109, 2232, 2310
BstHHI	GCGC	2 cut(s)	549, 2085
BstKTI	GATC	8 cut(s)	189, 594, 2038, 2425, 2635, 2647, 2983, 3029
BstMAI	GTCTC	1 cut(s)	1195
BstMBI	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
BstMWI	GCNNNNNNNGC	7 cut(s)	202, 205, 530, 1304, 1370, 1424, 2453
BstNI	CCWGG	1 cut(s)	2921
BstNSI	RCATGY	2 cut(s)	382, 1651
BstSCI	CCNGG	2 cut(s)	2062, 2919
BstSFI	CTRYAG	3 cut(s)	1546, 2628, 3292
BstSLI	GKGCMC	2 cut(s)	2054, 2458
BstV1I	GCAGC	8 cut(s)	120, 211, 214, 217, 533, 996, 1738, 3278
BstV2I	GAAGAC	2 cut(s)	252, 2725
BstX2I	RGATCY	2 cut(s)	2422, 2632
BstXI	CCANNNNNNTGG	1 cut(s)	2905
BstYI	RGATCY	2 cut(s)	2422, 2632
BstZ17I	GTATAC	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	2549
BtsIMutI	CAGTG	5 cut(s)	261, 360, 1504, 2406, 2514
BveI	ACCTGC	1 cut(s)	917
Cac8I	GCNNGC	4 cut(s)	1663, 2449, 2839, 3150
CciI	TCATGA	1 cut(s)	1173
CfoI	GCGC	2 cut(s)	549, 2085
Cfr13I	GGNCC	2 cut(s)	878, 2687
Csp6I	GTAC	5 cut(s)	12, 809, 2286, 2679, 2893
CviAII	CATG	8 cut(s)	379, 1174, 1253, 1531, 1648, 1680, 2495, 3277
CviQI	GTAC	5 cut(s)	12, 809, 2286, 2679, 2893
DdeI	CTNAG	9 cut(s)	264, 336, 688, 770, 1446, 1588, 2109, 2232, 2310
DpnI	GATC	8 cut(s)	188, 593, 2037, 2424, 2634, 2646, 2982, 3028
DpnII	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
DraI	TTTAAA	1 cut(s)	2851
DriI	GACNNNNNGTC	1 cut(s)	2887
EaeI	YGGCCR	1 cut(s)	1663
Eam1104I	CTCTTC	2 cut(s)	1274, 2923
Eam1105I	GACNNNNNGTC	1 cut(s)	2887
EarI	CTCTTC	2 cut(s)	1274, 2923
Eco147I	AGGCCT	2 cut(s)	775, 2149
Eco24I	GRGCYC	1 cut(s)	771
Eco31I	GGTCTC	1 cut(s)	1195
Eco32I	GATATC	1 cut(s)	1171
Eco57I	CTGAAG	4 cut(s)	237, 1187, 2211, 2906
Eco88I	CYCGRG	3 cut(s)	812, 1354, 1392
EcoRI	GAATTC	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	2919
EcoRV	GATATC	1 cut(s)	1171
EcoT22I	ATGCAT	4 cut(s)	574, 803, 1996, 2739
EcoT38I	GRGCYC	1 cut(s)	771
FaeI	CATG	8 cut(s)	382, 1177, 1256, 1534, 1651, 1683, 2498, 3280
FaqI	GGGAC	1 cut(s)	3282
FatI	CATG	8 cut(s)	378, 1173, 1252, 1530, 1647, 1679, 2494, 3276
FauI	CCCGC	1 cut(s)	814
FauNDI	CATATG	2 cut(s)	841, 3313
FbaI	TGATCA	2 cut(s)	186, 2035
FblI	GTMKAC	4 cut(s)	468, 639, 2196, 3267
FriOI	GRGCYC	1 cut(s)	771
FspBI	CTAG	8 cut(s)	15, 42, 345, 2246, 2360, 2618, 2723, 3075
FspI	TGCGCA	1 cut(s)	548
GlaI	GCGC	2 cut(s)	548, 2084
GsuI	CTGGAG	3 cut(s)	653, 1081, 2578
HapII	CCGG	2 cut(s)	1511, 2063
HhaI	GCGC	2 cut(s)	549, 2085
Hin1II	CATG	8 cut(s)	382, 1177, 1256, 1534, 1651, 1683, 2498, 3280
Hin6I	GCGC	2 cut(s)	547, 2083
HinP1I	GCGC	2 cut(s)	547, 2083
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	2415
HinfI	GANTC	9 cut(s)	352, 514, 1121, 1283, 1352, 1514, 2182, 2252, 2987
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	1511, 2063
HphI	GGTGA	7 cut(s)	238, 1185, 1361, 2461, 2669, 2834, 3091
Hpy99I	CGWCG	1 cut(s)	887
HpyAV	CCTTC	9 cut(s)	534, 653, 711, 1178, 1696, 2069, 2679, 2861, 3150
HpyCH4III	ACNGT	9 cut(s)	280, 733, 901, 1048, 1277, 1499, 1726, 1915, 2375
HpyCH4IV	ACGT	3 cut(s)	885, 1217, 2290
HpyF10VI	GCNNNNNNNGC	7 cut(s)	202, 205, 530, 1304, 1370, 1424, 2453
HpyF3I	CTNAG	9 cut(s)	264, 336, 688, 770, 1446, 1588, 2109, 2232, 2310
HpySE526I	ACGT	3 cut(s)	885, 1217, 2290
Hsp92II	CATG	8 cut(s)	382, 1177, 1256, 1534, 1651, 1683, 2498, 3280
HspAI	GCGC	2 cut(s)	547, 2083
Kpn2I	TCCGGA	1 cut(s)	1510
Ksp22I	TGATCA	2 cut(s)	186, 2035
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
LmnI	GCTCC	2 cut(s)	1093, 3145
Lsp1109I	GCAGC	8 cut(s)	120, 211, 214, 217, 533, 996, 1738, 3278
LweI	GCATC	8 cut(s)	429, 901, 1456, 2083, 2296, 2479, 2929, 3244
MaeI	CTAG	8 cut(s)	15, 42, 345, 2246, 2360, 2618, 2723, 3075
MaeII	ACGT	3 cut(s)	885, 1217, 2290
MaeIII	GTNAC	8 cut(s)	274, 994, 1099, 1349, 1519, 1581, 1729, 2481
MalI	GATC	8 cut(s)	188, 593, 2037, 2424, 2634, 2646, 2982, 3028
MboI	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
MflI	RGATCY	2 cut(s)	2422, 2632
MhlI	GDGCHC	3 cut(s)	771, 2054, 2458
MlyI	GAGTC	1 cut(s)	1346
MmeI	TCCRAC	4 cut(s)	1146, 1745, 2110, 3115
Mph1103I	ATGCAT	4 cut(s)	574, 803, 1996, 2739
MroI	TCCGGA	1 cut(s)	1510
MroXI	GAANNNNTTC	1 cut(s)	2388
MslI	CAYNNNNRTG	3 cut(s)	1479, 1535, 2903
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	2 cut(s)	1511, 2063
MspR9I	CCNGG	2 cut(s)	2064, 2921
Mva1269I	GAATGC	3 cut(s)	574, 1154, 1994
MvaI	CCWGG	1 cut(s)	2921
MwoI	GCNNNNNNNGC	7 cut(s)	202, 205, 530, 1304, 1370, 1424, 2453
NciI	CCSGG	1 cut(s)	2064
NdeI	CATATG	2 cut(s)	841, 3313
NdeII	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
NlaIII	CATG	8 cut(s)	382, 1177, 1256, 1534, 1651, 1683, 2498, 3280
NlaIV	GGNNCC	1 cut(s)	880
NmeAIII	GCCGAG	2 cut(s)	696, 1691
NmuCI	GTSAC	3 cut(s)	274, 1349, 1729
NsbI	TGCGCA	1 cut(s)	548
NsiI	ATGCAT	4 cut(s)	574, 803, 1996, 2739
NspI	RCATGY	2 cut(s)	382, 1651
NspV	TTCGAA	1 cut(s)	2813
PaeR7I	CTCGAG	1 cut(s)	1392
PagI	TCATGA	1 cut(s)	1173
PceI	AGGCCT	2 cut(s)	775, 2149
PctI	GAATGC	3 cut(s)	574, 1154, 1994
PdmI	GAANNNNTTC	1 cut(s)	2388
PfeI	GAWTC	8 cut(s)	352, 514, 1121, 1283, 1514, 2182, 2252, 2987
PflMI	CCANNNNNTGG	1 cut(s)	649
PleI	GAGTC	1 cut(s)	1346
PpsI	GAGTC	1 cut(s)	1346
Ppu21I	YACGTR	1 cut(s)	2291
PshBI	ATTAAT	2 cut(s)	3012, 3113
PsiI	TTATAA	3 cut(s)	1527, 2801, 3165
Psp6I	CCWGG	1 cut(s)	2919
PspGI	CCWGG	1 cut(s)	2919
PspN4I	GGNNCC	1 cut(s)	880
PspPI	GGNCC	2 cut(s)	878, 2687
PspXI	VCTCGAGB	1 cut(s)	1392
PstI	CTGCAG	1 cut(s)	3296
PsuI	RGATCY	2 cut(s)	2422, 2632
RsaI	GTAC	5 cut(s)	13, 810, 2287, 2680, 2894
RsaNI	GTAC	5 cut(s)	12, 809, 2286, 2679, 2893
RseI	CAYNNNNRTG	3 cut(s)	1479, 1535, 2903
Sau3AI	GATC	8 cut(s)	186, 591, 2035, 2422, 2632, 2644, 2980, 3026
Sau96I	GGNCC	2 cut(s)	878, 2687
ScaI	AGTACT	1 cut(s)	810
SchI	GAGTC	1 cut(s)	1346
ScrFI	CCNGG	2 cut(s)	2064, 2921
SduI	GDGCHC	3 cut(s)	771, 2054, 2458
SfaNI	GCATC	8 cut(s)	429, 901, 1456, 2083, 2296, 2479, 2929, 3244
SfcI	CTRYAG	3 cut(s)	1546, 2628, 3292
Sfr274I	CTCGAG	1 cut(s)	1392
SfuI	TTCGAA	1 cut(s)	2813
SlaI	CTCGAG	1 cut(s)	1392
SmiMI	CAYNNNNRTG	3 cut(s)	1479, 1535, 2903
SmlI	CTYRAG	3 cut(s)	665, 677, 1392
SmoI	CTYRAG	3 cut(s)	665, 677, 1392
SpeI	ACTAGT	2 cut(s)	14, 41
SseBI	AGGCCT	2 cut(s)	775, 2149
SsiI	CCGC	5 cut(s)	197, 821, 1237, 3070, 3288
SspI	AATATT	2 cut(s)	1411, 2794
SspMI	CTAG	8 cut(s)	15, 42, 345, 2246, 2360, 2618, 2723, 3075
StuI	AGGCCT	2 cut(s)	775, 2149
StyD4I	CCNGG	2 cut(s)	2062, 2919
TaaI	ACNGT	9 cut(s)	280, 733, 901, 1048, 1277, 1499, 1726, 1915, 2375
TaiI	ACGT	3 cut(s)	888, 1220, 2293
TaqI	TCGA	5 cut(s)	517, 1329, 1393, 2275, 2813
TaqII	GACCGA	1 cut(s)	2214
TatI	WGTACW	4 cut(s)	11, 808, 2285, 2678
TauI	GCSGC	2 cut(s)	199, 3291
TfiI	GAWTC	8 cut(s)	352, 514, 1121, 1283, 1514, 2182, 2252, 2987
TscAI	CASTG	5 cut(s)	261, 367, 1504, 2413, 2521
TseFI	GTSAC	3 cut(s)	274, 1349, 1729
TseI	GCWGC	9 cut(s)	6, 133, 199, 202, 205, 521, 1009, 1751, 3291
Tsp45I	GTSAC	3 cut(s)	274, 1349, 1729
TspGWI	ACGGA	1 cut(s)	3046
TspRI	CASTG	5 cut(s)	261, 367, 1504, 2413, 2521
Van91I	CCANNNNNTGG	1 cut(s)	649
Vha464I	CTTAAG	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	2050
VspI	ATTAAT	2 cut(s)	3012, 3113
XapI	RAATTY	3 cut(s)	846, 1055, 2314
XbaI	TCTAGA	1 cut(s)	2359
XceI	RCATGY	2 cut(s)	382, 1651
XhoI	CTCGAG	1 cut(s)	1392
XmiI	GTMKAC	4 cut(s)	468, 639, 2196, 3267
XmnI	GAANNNNTTC	1 cut(s)	2388
XspI	CTAG	8 cut(s)	15, 42, 345, 2246, 2360, 2618, 2723, 3075
ZrmI	AGTACT	1 cut(s)	810
Zsp2I	ATGCAT	4 cut(s)	574, 803, 1996, 2739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.