Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Forward (+)

9465686 .. 9469230

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

ATGTGCTGCTGTAGTACTAGTCTTGCTTATACTGACACCAGCACTAGTGGTAGTAGGATATTTGCTATAACCACCCACACTCCTTCTGTTCTACATCAACCAAATTTAAAGGTTTGGCCTTGTGGTTCGCTGCTCAACTTGAACGGGAAGAGGAACAAACGGTTGGGTTTCTGTGGCTTTGTGATCAAAAGGCCGCAGCAGCAGGAGGTGGTGGTGGTGAAGAAGAAAAAGCCCAAAACTTCAGTGTCTTCTGAGGAAGTTGTGAGGGTTCTGAAGTCCATTTCAGACCCGACTTCTGCCTTTTCATTCTTTAAGTCCATTGCTGAGTTGCCTAGTGTGATTCACACCACTGAAACTTGCAATTACATGCTTCAACTCTTGGGTGTTCATAGGAGGGTGGACGATATGGCTTTTGTGTTTGATTTGATGCAAAAGCATATCATAAACAGGAGTGTAGACACTTACCTCATTATATTTAAGGGTCTTAATATAAGAGGTGGGATTCGAGCAGCCCCGTATGCTCTTGGAAGGTTGCGCAAAAATGGGTTTATCTTGAATGCATATTCATACAATGGCTTGATCTATATGCTTATCCAGTCTGGCTATTGTAGGGAGGCTCTGGAGGTATACCAAAGGGTGGTGTCAGAGGGACTTAAGCCGAGCCTCAAGACTTACTCAGCACTTATGGTGGCATTGGGAAAGAGAAGGGATGTTCAAACTGTTATGGGCTTACTAAAAGAGATGGAAACTTTGGGGCTCAGGCCTAATGTTTATACTTTCACTATATGCATTAGAGTACTCGGGAGAGCGGGGAAAATTGATGAGGCATATGAAATTTTCAAGAGAATGGATGATGAGGGATGCGGCCCCGATGTTATCACTTATACTGTTCTCATTGATTCTCTTTGTAATGCAGGTAAACTTGATAATGCCAAGAAGTTGTTTGCAAATATGAAAGCAAGTGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGTGATAGTGAAGACTTGGACACAGTAAAAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTTACTTTCACTATACTGGTTGATTCTTTATGCAAAGCTGGAAATGTAGATGAGGCATTCAATATGTTGGATATCATGAGGAAAGAAGGGGTCTCACCAAATCTTCATACCTACAACACGTTAATTTGTGGACTTCTGCGGTTATGTAGGTTGGATGAGGCATTGGAACTCTTCAACAGTATGGATTCTCTTGGTGTTGCACCTACTGCTTACACATACATCCTTTTCATTGACTATTATGGAAAGTCTGGTGACTCGGGAAAAGCTATTGAGGCATTTGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCTTTGTATGGTCTTGCTGAGGAGGGTAGACTTCAAGATGCAAAACATATTTATGATGAGCTTATATACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAAGGTGGGGCAAATAGATGAAGCCACCAAGTTACTCTCAGAGATGGAAAGAAATGGGTGTGAGGCTGATGTCATCATAGTTAATTCGTTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCAGAAAAGCTATTGAAATGTTTGAGAATATGACTGAACAAGGGTGTCCTCCAAATGCAATAACTTTCAACACACTCCTGAATTGCCTTTGCAAGAATGATGAGGTCAATTTGGGCTTGAAAATGCTTTGCAAAATGACCGTGATGAATTGCTGTCCTGATGTTTTGACCTATAACACTATAATTTATGGCCTAATCAGAGAAAACAGAATTGATTATGCTTTCTGGTTCTTCCATCAGATGAAGAAACGCCTATTTCCTGATCATATAACATTGTGCACCCTCCTTCCGGGTGTAGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTGCTGAGGACTTTGCATATCAGTTTAGGGTTCAAGCAGACAGGCCTTTTTGGGAAGATTTGATTGGAGGGGTTGTGATTCAAGCTGAAGTGGGCCGAGCCATTTTATTTGCTGAAAGGTTGATTTCTGAGAGGATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTAGGAAAACTCTTGATGCTCAGAATTTGTTTGCAAAGTTTACTGGAACTCTTGGAGTTAAGCCAACACTGGAAGCATATAACTGTTTGATCGAATGGCTTCTTAAAGGCCATTTCACCGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCCCCTGATGTATTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGACGAGATGATTTGCAGGGGATACAAGCCTAACACCATAACACACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAGATCTATATTATGATCTTGTAAGTGGTGATTTTTCTCCTTCTCCTTGTACATACGGCCCTCTCATAGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGATGTAAGCCTAATTGTGCGATCTTCAATATTCTTATAAATGGTTTTTCGAAAACAGGTGATGTGGAAACTGCTTGCGAGTTGTTTAAAAGGATGATTAAAGAAGGAATAAGACCAGACCTGAAGTCATACACCATTCTAGTGGATTGCTACTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTACGACGAAGTGGCCTTGATCCTGATTCAGTTTCCTACAACCTTATGATTAATGGACTTGGAAGATCACGGAGGATGGAGGAAGCTCTCGCTCTTTATGATGAAATGCGGACTAGAAGAATTACTCCCGATATTTTCACCTACAATTCATTAATACTCAATCTTGGACTTGTTGGAATGGTGGAGCAAGCAGGAAGGATTTATAAAGAGCTACAACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTCATTCGGCTGCATAGCACTTCTGGAAATCCAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGGTTTTTCTCTGAACACAATTCCACGGCGTTTACCTCACTCACATTCGATGATTTCGGCGATGGTCGAGTGCACAGAAGTCCACTTTTTTGGTGTTGATTTTGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1134

Amino Acids

127.76

Weight (kDa)

6.05

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	173 - 283	4.5e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	179 - 235	1.1e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	180 - 279	1.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	224 - 267	6.9e-08	PPR repeat family
PPR_3	PF13812	244 - 300	7.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	252 - 283	2.7e-07	PPR repeat
PPR	PF01535	258 - 288	2.5e-06	PPR repeat
PPR_2	PF13041	264 - 304	7.2e-11	PPR repeat family
PPR_1	PF12854	287 - 319	1.3e-11	PPR repeat
PPR_2	PF13041	290 - 337	1e-14	PPR repeat family
PPR_3	PF13812	290 - 337	5.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	293 - 322	4.3e-06	PPR repeat
PPR_2	PF13041	325 - 374	2.5e-11	PPR repeat family
PPR_long	PF17177	342 - 459	3.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	351 - 404	6.2e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	357 - 389	1.6e-13	PPR repeat
PPR_2	PF13041	360 - 408	9.2e-17	PPR repeat family
PPR	PF01535	363 - 393	5.2e-07	PPR repeat
PPR_1	PF12854	392 - 423	1.7e-07	PPR repeat
PPR_2	PF13041	395 - 439	8.5e-12	PPR repeat family
PPR	PF01535	399 - 428	4.1e-06	PPR repeat
PPR_3	PF13812	455 - 513	9.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	465 - 514	6.3e-10	PPR repeat family
PPR_1	PF12854	497 - 529	3.2e-09	PPR repeat
TPR_24	PF23276	497 - 597	1.6e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	500 - 537	3.3e-11	PPR repeat family
PPR	PF01535	503 - 533	1.1e-08	PPR repeat
PPR_long	PF17177	519 - 614	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	523 - 584	3.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	531 - 564	1.7e-06	PPR repeat
PPR_2	PF13041	536 - 579	2.1e-11	PPR repeat family
PPR_1	PF12854	568 - 599	1.3e-08	PPR repeat
PPR_2	PF13041	570 - 619	8.1e-19	PPR repeat family
PPR	PF01535	573 - 603	1.8e-07	PPR repeat
PPR_1	PF12854	602 - 634	4.5e-08	PPR repeat
PPR_2	PF13041	605 - 652	1.6e-11	PPR repeat family
PPR_1	PF12854	636 - 669	2.1e-08	PPR repeat
PPR_2	PF13041	640 - 687	6.1e-09	PPR repeat family
PPR_2	PF13041	783 - 828	4.6e-13	PPR repeat family
PPR_3	PF13812	805 - 864	3.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	813 - 844	5.5e-06	PPR repeat
PPR_2	PF13041	816 - 865	9.3e-14	PPR repeat family
PPR_3	PF13812	878 - 933	2.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	884 - 914	1.5e-07	PPR repeat
PPR_2	PF13041	886 - 922	5.6e-08	PPR repeat family
PPR	PF01535	890 - 919	5.5e-06	PPR repeat
PPR_long	PF17177	905 - 995	6.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	918 - 949	4.9e-09	PPR repeat
PPR	PF01535	925 - 954	1.1e-07	PPR repeat
PPR_2	PF13041	925 - 970	9e-14	PPR repeat family
TPR_24	PF23276	935 - 1053	1.4e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	945 - 1004	5.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	953 - 983	1.8e-08	PPR repeat
PPR	PF01535	960 - 989	5.9e-07	PPR repeat
PPR_2	PF13041	960 - 1004	6.4e-12	PPR repeat family
PPR_3	PF13812	981 - 1035	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	988 - 1020	2.2e-08	PPR repeat
PPR_2	PF13041	991 - 1035	2.8e-15	PPR repeat family
PPR	PF01535	994 - 1023	3.4e-08	PPR repeat
PPR_3	PF13812	1049 - 1104	6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	1061 - 1104	4.3e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1515, 2789, 3153
Acc16I	TGCGCA	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	905
AccB7I	CCANNNNNTGG	1 cut(s)	637
AccBSI	CCGCTC	1 cut(s)	809
AccI	GTMKAC	4 cut(s)	456, 627, 1444, 3255
AccIII	TCCGGA	1 cut(s)	1498
AciI	CCGC	6 cut(s)	194, 809, 864, 1225, 3058, 3276
AclWI	GGATC	2 cut(s)	2418, 2963
AcoI	YGGCCR	1 cut(s)	1651
AcsI	RAATTY	4 cut(s)	103, 834, 1043, 2302
AcuI	CTGAAG	4 cut(s)	225, 293, 2199, 2894
AfaI	GTAC	4 cut(s)	16, 798, 2275, 2668
AfiI	CCNNNNNNNGG	3 cut(s)	637, 2050, 2611
AflII	CTTAAG	1 cut(s)	653
AflIII	ACRYGT	2 cut(s)	1203, 2276
AhdI	GACNNNNNGTC	1 cut(s)	2875
AhlI	ACTAGT	2 cut(s)	17, 44
AjnI	CCWGG	1 cut(s)	2907
AjuI	GAANNNNNNNTTGG	4 cut(s)	146, 178, 2139, 2171
Alw21I	GWGCWC	2 cut(s)	2042, 3365
Alw26I	GTCTC	1 cut(s)	1183
Alw44I	GTGCAC	2 cut(s)	2038, 3361
AlwI	GGATC	2 cut(s)	2418, 2963
Ama87I	CYCGRG	3 cut(s)	800, 1342, 1380
Aor13HI	TCCGGA	1 cut(s)	1498
ApaLI	GTGCAC	2 cut(s)	2038, 3361
ApeKI	GCWGC	9 cut(s)	6, 130, 196, 199, 509, 997, 1739, 3214, 3279
ApoI	RAATTY	4 cut(s)	103, 834, 1043, 2302
AseI	ATTAAT	2 cut(s)	3000, 3101
Asp700I	GAANNNNTTC	1 cut(s)	2376
AspLEI	GCGC	2 cut(s)	537, 2073
AspS9I	GGNCC	3 cut(s)	866, 2185, 2675
AsuC2I	CCSGG	1 cut(s)	2052
AsuHPI	GGTGA	8 cut(s)	229, 1173, 1349, 2386, 2449, 2657, 2822, 3079
AsuII	TTCGAA	1 cut(s)	2801
AvaI	CYCGRG	3 cut(s)	800, 1342, 1380
BaeGI	GKGCMC	3 cut(s)	2042, 2446, 3365
BanII	GRGCYC	1 cut(s)	759
BbsI	GAAGAC	3 cut(s)	240, 1029, 2713
Bbv12I	GWGCWC	2 cut(s)	2042, 3365
BbvCI	CCTCAGC	2 cut(s)	1434, 2097
BbvI	GCAGC	8 cut(s)	117, 208, 211, 521, 984, 1726, 3201, 3266
BceAI	ACGGC	2 cut(s)	2689, 3332
BciT130I	CCWGG	1 cut(s)	2909
BciVI	GTATCC	1 cut(s)	2537
BclI	TGATCA	2 cut(s)	183, 2023
BcnI	CCSGG	1 cut(s)	2052
BcoDI	GTCTC	1 cut(s)	1183
BcuI	ACTAGT	2 cut(s)	17, 44
BfaI	CTAG	8 cut(s)	18, 45, 333, 2234, 2606, 2711, 2891, 3063
BfmI	CTRYAG	4 cut(s)	10, 1534, 2616, 3280
BfrI	CTTAAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	905
BfuI	GTATCC	1 cut(s)	2537
BglII	AGATCT	1 cut(s)	2620
BmcAI	AGTACT	2 cut(s)	16, 798
Bme1390I	CCNGG	2 cut(s)	2052, 2909
BmeRI	GACNNNNNGTC	1 cut(s)	2875
BmeT110I	CYCGRG	3 cut(s)	800, 1342, 1380
BmgT120I	GGNCC	3 cut(s)	866, 2185, 2675
BmiI	GGNNCC	1 cut(s)	868
BmrFI	CCNGG	2 cut(s)	2052, 2909
BmsI	GCATC	8 cut(s)	417, 851, 1444, 2071, 2284, 2467, 2917, 3232
BpiI	GAAGAC	3 cut(s)	240, 1029, 2713
BpmI	CTGGAG	3 cut(s)	641, 1069, 2566
Bpu10I	CCTNAGC	3 cut(s)	758, 1434, 2097
Bpu14I	TTCGAA	1 cut(s)	2801
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	1 cut(s)	2052
BsaAI	YACGTR	1 cut(s)	2279
BsaI	GGTCTC	1 cut(s)	1183
BsaJI	CCNNGG	1 cut(s)	3314
BsaWI	WCCGGW	1 cut(s)	1498
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 2151, 2181
Bsc4I	CCNNNNNNNGG	3 cut(s)	637, 2050, 2611
Bse1I	ACTGG	7 cut(s)	595, 1107, 1740, 2326, 2352, 2583, 3175
Bse3DI	GCAATG	2 cut(s)	318, 2727
BseAI	TCCGGA	1 cut(s)	1498
BseBI	CCWGG	1 cut(s)	2909
BseDI	CCNNGG	1 cut(s)	3314
BseLI	CCNNNNNNNGG	3 cut(s)	637, 2050, 2611
BseMI	GCAATG	2 cut(s)	318, 2727
BseMII	CTCAG	9 cut(s)	243, 315, 690, 772, 1425, 1590, 2088, 2211, 2312
BseNI	ACTGG	7 cut(s)	595, 1107, 1740, 2326, 2352, 2583, 3175
BseRI	GAGGAG	3 cut(s)	1451, 2750, 2960
BseSI	GKGCMC	3 cut(s)	2042, 2446, 3365
BseXI	GCAGC	8 cut(s)	117, 208, 211, 521, 984, 1726, 3201, 3266
BsiHKAI	GWGCWC	2 cut(s)	2042, 3365
BsiHKCI	CYCGRG	3 cut(s)	800, 1342, 1380
BsiSI	CCGG	2 cut(s)	1499, 2051
BslFI	GGGAC	2 cut(s)	663, 3270
BslI	CCNNNNNNNGG	3 cut(s)	637, 2050, 2611
BsmAI	GTCTC	1 cut(s)	1183
BsmFI	GGGAC	2 cut(s)	663, 3270
BsmI	GAATGC	2 cut(s)	562, 1142
Bso31I	GGTCTC	1 cut(s)	1183
BsoBI	CYCGRG	3 cut(s)	800, 1342, 1380
Bsp119I	TTCGAA	1 cut(s)	2801
Bsp1286I	GDGCHC	4 cut(s)	759, 2042, 2446, 3365
Bsp13I	TCCGGA	1 cut(s)	1498
Bsp1407I	TGTACA	2 cut(s)	2273, 2666
BspACI	CCGC	6 cut(s)	194, 809, 864, 1225, 3058, 3276
BspCNI	CTCAG	9 cut(s)	244, 316, 689, 771, 1426, 1589, 2089, 2212, 2311
BspEI	TCCGGA	1 cut(s)	1498
BspHI	TCATGA	1 cut(s)	1161
BspLI	GGNNCC	1 cut(s)	868
BspMAI	CTGCAG	1 cut(s)	3284
BspMI	ACCTGC	1 cut(s)	905
BspPI	GGATC	2 cut(s)	2418, 2963
BspT104I	TTCGAA	1 cut(s)	2801
BspTI	CTTAAG	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	1183
BsrBI	CCGCTC	1 cut(s)	809
BsrDI	GCAATG	2 cut(s)	318, 2727
BsrGI	TGTACA	2 cut(s)	2273, 2666
BsrI	ACTGG	7 cut(s)	595, 1107, 1740, 2326, 2352, 2583, 3175
BssECI	CCNNGG	1 cut(s)	3314
BssNAI	GTATAC	1 cut(s)	628
Bst1107I	GTATAC	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	2909
Bst4CI	ACNGT	9 cut(s)	162, 721, 889, 1036, 1265, 1487, 1714, 1903, 2363
Bst6I	CTCTTC	3 cut(s)	143, 1262, 2911
BstAFI	CTTAAG	1 cut(s)	653
BstAPI	GCANNNNNTGC	1 cut(s)	1292
BstAUI	TGTACA	2 cut(s)	2273, 2666
BstBAI	YACGTR	1 cut(s)	2279
BstBI	TTCGAA	1 cut(s)	2801
BstC8I	GCNNGC	4 cut(s)	1651, 2437, 2827, 3138
BstDEI	CTNAG	9 cut(s)	252, 324, 676, 758, 1434, 1576, 2097, 2220, 2298
BstDSI	CCRYGG	1 cut(s)	3314
BstHHI	GCGC	2 cut(s)	537, 2073
BstMAI	GTCTC	1 cut(s)	1183
BstMWI	GCNNNNNNNGC	6 cut(s)	199, 518, 1292, 1358, 1412, 2441
BstNI	CCWGG	1 cut(s)	2909
BstNSI	RCATGY	2 cut(s)	370, 1639
BstSCI	CCNGG	2 cut(s)	2050, 2907
BstSFI	CTRYAG	4 cut(s)	10, 1534, 2616, 3280
BstSLI	GKGCMC	3 cut(s)	2042, 2446, 3365
BstV1I	GCAGC	8 cut(s)	117, 208, 211, 521, 984, 1726, 3201, 3266
BstV2I	GAAGAC	3 cut(s)	240, 1029, 2713
BstX2I	RGATCY	2 cut(s)	2410, 2620
BstXI	CCANNNNNNTGG	2 cut(s)	2893, 3380
BstYI	RGATCY	2 cut(s)	2410, 2620
BstZ17I	GTATAC	1 cut(s)	628
BsuI	GTATCC	1 cut(s)	2537
BtgI	CCRYGG	1 cut(s)	3314
BtgZI	GCGATG	1 cut(s)	3365
BtsIMutI	CAGTG	5 cut(s)	249, 348, 1492, 2345, 2502
BveI	ACCTGC	1 cut(s)	905
Cac8I	GCNNGC	4 cut(s)	1651, 2437, 2827, 3138
CciI	TCATGA	1 cut(s)	1161
CfoI	GCGC	2 cut(s)	537, 2073
Cfr13I	GGNCC	3 cut(s)	866, 2185, 2675
Csp6I	GTAC	4 cut(s)	15, 797, 2274, 2667
CviAII	CATG	7 cut(s)	367, 1162, 1519, 1636, 1668, 2483, 3265
CviQI	GTAC	4 cut(s)	15, 797, 2274, 2667
DdeI	CTNAG	9 cut(s)	252, 324, 676, 758, 1434, 1576, 2097, 2220, 2298
DraI	TTTAAA	2 cut(s)	108, 2839
DriI	GACNNNNNGTC	1 cut(s)	2875
EaeI	YGGCCR	1 cut(s)	1651
Eam1104I	CTCTTC	3 cut(s)	143, 1262, 2911
Eam1105I	GACNNNNNGTC	1 cut(s)	2875
EarI	CTCTTC	3 cut(s)	143, 1262, 2911
Eco147I	AGGCCT	2 cut(s)	763, 2137
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	1183
Eco32I	GATATC	1 cut(s)	1159
Eco57I	CTGAAG	4 cut(s)	225, 293, 2199, 2894
Eco88I	CYCGRG	3 cut(s)	800, 1342, 1380
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	1 cut(s)	2907
EcoRV	GATATC	1 cut(s)	1159
EcoT22I	ATGCAT	3 cut(s)	562, 791, 2727
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	7 cut(s)	370, 1165, 1522, 1639, 1671, 2486, 3268
FaqI	GGGAC	2 cut(s)	663, 3270
FatI	CATG	7 cut(s)	366, 1161, 1518, 1635, 1667, 2482, 3264
FauI	CCCGC	1 cut(s)	802
FauNDI	CATATG	1 cut(s)	829
FbaI	TGATCA	2 cut(s)	183, 2023
FblI	GTMKAC	4 cut(s)	456, 627, 1444, 3255
FriOI	GRGCYC	1 cut(s)	759
FspBI	CTAG	8 cut(s)	18, 45, 333, 2234, 2606, 2711, 2891, 3063
FspI	TGCGCA	1 cut(s)	536
GlaI	GCGC	2 cut(s)	536, 2072
GsuI	CTGGAG	3 cut(s)	641, 1069, 2566
HapII	CCGG	2 cut(s)	1499, 2051
HhaI	GCGC	2 cut(s)	537, 2073
Hin1II	CATG	7 cut(s)	370, 1165, 1522, 1639, 1671, 2486, 3268
Hin6I	GCGC	2 cut(s)	535, 2071
HinP1I	GCGC	2 cut(s)	535, 2071
HindIII	AAGCTT	1 cut(s)	2403
HpaII	CCGG	2 cut(s)	1499, 2051
HphI	GGTGA	8 cut(s)	229, 1173, 1349, 2386, 2449, 2657, 2822, 3079
Hpy99I	CGWCG	1 cut(s)	2958
HpyAV	CCTTC	9 cut(s)	93, 522, 699, 1166, 1684, 2057, 2667, 2849, 3138
HpyCH4III	ACNGT	9 cut(s)	162, 721, 889, 1036, 1265, 1487, 1714, 1903, 2363
HpyCH4IV	ACGT	2 cut(s)	1205, 2278
HpyF10VI	GCNNNNNNNGC	6 cut(s)	199, 518, 1292, 1358, 1412, 2441
HpyF3I	CTNAG	9 cut(s)	252, 324, 676, 758, 1434, 1576, 2097, 2220, 2298
HpySE526I	ACGT	2 cut(s)	1205, 2278
Hsp92II	CATG	7 cut(s)	370, 1165, 1522, 1639, 1671, 2486, 3268
HspAI	GCGC	2 cut(s)	535, 2071
Kpn2I	TCCGGA	1 cut(s)	1498
Ksp22I	TGATCA	2 cut(s)	183, 2023
LmnI	GCTCC	2 cut(s)	1081, 3133
Lsp1109I	GCAGC	8 cut(s)	117, 208, 211, 521, 984, 1726, 3201, 3266
LweI	GCATC	8 cut(s)	417, 851, 1444, 2071, 2284, 2467, 2917, 3232
MaeI	CTAG	8 cut(s)	18, 45, 333, 2234, 2606, 2711, 2891, 3063
MaeII	ACGT	2 cut(s)	1205, 2278
MaeIII	GTNAC	8 cut(s)	982, 1087, 1337, 1507, 1569, 1717, 2469, 2949
MbiI	CCGCTC	1 cut(s)	809
MflI	RGATCY	2 cut(s)	2410, 2620
MhlI	GDGCHC	4 cut(s)	759, 2042, 2446, 3365
MlyI	GAGTC	1 cut(s)	1334
MmeI	TCCRAC	4 cut(s)	1134, 1218, 1733, 3103
Mph1103I	ATGCAT	3 cut(s)	562, 791, 2727
MroI	TCCGGA	1 cut(s)	1498
MroXI	GAANNNNTTC	1 cut(s)	2376
MslI	CAYNNNNRTG	3 cut(s)	1467, 1523, 2891
MspCI	CTTAAG	1 cut(s)	653
MspI	CCGG	2 cut(s)	1499, 2051
MspR9I	CCNGG	2 cut(s)	2052, 2909
Mva1269I	GAATGC	2 cut(s)	562, 1142
MvaI	CCWGG	1 cut(s)	2909
MwoI	GCNNNNNNNGC	6 cut(s)	199, 518, 1292, 1358, 1412, 2441
NciI	CCSGG	1 cut(s)	2052
NdeI	CATATG	1 cut(s)	829
NlaIII	CATG	7 cut(s)	370, 1165, 1522, 1639, 1671, 2486, 3268
NlaIV	GGNNCC	1 cut(s)	868
NmeAIII	GCCGAG	3 cut(s)	684, 1679, 2213
NmuCI	GTSAC	2 cut(s)	1337, 1717
NsbI	TGCGCA	1 cut(s)	536
NsiI	ATGCAT	3 cut(s)	562, 791, 2727
NspI	RCATGY	2 cut(s)	370, 1639
NspV	TTCGAA	1 cut(s)	2801
PaeR7I	CTCGAG	1 cut(s)	1380
PagI	TCATGA	1 cut(s)	1161
PceI	AGGCCT	2 cut(s)	763, 2137
PctI	GAATGC	2 cut(s)	562, 1142
PdmI	GAANNNNTTC	1 cut(s)	2376
PfeI	GAWTC	9 cut(s)	340, 502, 899, 1109, 1271, 1502, 2170, 2240, 2975
PflMI	CCANNNNNTGG	1 cut(s)	637
PleI	GAGTC	1 cut(s)	1334
PpsI	GAGTC	1 cut(s)	1334
Ppu21I	YACGTR	1 cut(s)	2279
PshBI	ATTAAT	2 cut(s)	3000, 3101
PsiI	TTATAA	3 cut(s)	1515, 2789, 3153
Psp6I	CCWGG	1 cut(s)	2907
PspGI	CCWGG	1 cut(s)	2907
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	3 cut(s)	866, 2185, 2675
PspXI	VCTCGAGB	1 cut(s)	1380
PstI	CTGCAG	1 cut(s)	3284
PsuI	RGATCY	2 cut(s)	2410, 2620
RsaI	GTAC	4 cut(s)	16, 798, 2275, 2668
RsaNI	GTAC	4 cut(s)	15, 797, 2274, 2667
RseI	CAYNNNNRTG	3 cut(s)	1467, 1523, 2891
Sau96I	GGNCC	3 cut(s)	866, 2185, 2675
ScaI	AGTACT	2 cut(s)	16, 798
SchI	GAGTC	1 cut(s)	1334
ScrFI	CCNGG	2 cut(s)	2052, 2909
SduI	GDGCHC	4 cut(s)	759, 2042, 2446, 3365
SfaNI	GCATC	8 cut(s)	417, 851, 1444, 2071, 2284, 2467, 2917, 3232
SfcI	CTRYAG	4 cut(s)	10, 1534, 2616, 3280
Sfr274I	CTCGAG	1 cut(s)	1380
SfuI	TTCGAA	1 cut(s)	2801
SlaI	CTCGAG	1 cut(s)	1380
SmiMI	CAYNNNNRTG	3 cut(s)	1467, 1523, 2891
SmlI	CTYRAG	3 cut(s)	653, 665, 1380
SmoI	CTYRAG	3 cut(s)	653, 665, 1380
SpeI	ACTAGT	2 cut(s)	17, 44
SseBI	AGGCCT	2 cut(s)	763, 2137
SsiI	CCGC	6 cut(s)	194, 809, 864, 1225, 3058, 3276
SspI	AATATT	2 cut(s)	1399, 2782
SspMI	CTAG	8 cut(s)	18, 45, 333, 2234, 2606, 2711, 2891, 3063
StuI	AGGCCT	2 cut(s)	763, 2137
StyD4I	CCNGG	2 cut(s)	2050, 2907
TaaI	ACNGT	9 cut(s)	162, 721, 889, 1036, 1265, 1487, 1714, 1903, 2363
TaiI	ACGT	2 cut(s)	1208, 2281
TaqI	TCGA	7 cut(s)	505, 1381, 2263, 2370, 2801, 3338, 3357
TatI	WGTACW	4 cut(s)	14, 796, 2273, 2666
TauI	GCSGC	3 cut(s)	196, 867, 3279
TfiI	GAWTC	9 cut(s)	340, 502, 899, 1109, 1271, 1502, 2170, 2240, 2975
TscAI	CASTG	5 cut(s)	249, 355, 1492, 2352, 2509
TseFI	GTSAC	2 cut(s)	1337, 1717
TseI	GCWGC	9 cut(s)	6, 130, 196, 199, 509, 997, 1739, 3214, 3279
Tsp45I	GTSAC	2 cut(s)	1337, 1717
TspGWI	ACGGA	1 cut(s)	3034
TspRI	CASTG	5 cut(s)	249, 355, 1492, 2352, 2509
Van91I	CCANNNNNTGG	1 cut(s)	637
Vha464I	CTTAAG	1 cut(s)	653
VneI	GTGCAC	2 cut(s)	2038, 3361
VspI	ATTAAT	2 cut(s)	3000, 3101
XapI	RAATTY	4 cut(s)	103, 834, 1043, 2302
XceI	RCATGY	2 cut(s)	370, 1639
XhoI	CTCGAG	1 cut(s)	1380
XmiI	GTMKAC	4 cut(s)	456, 627, 1444, 3255
XmnI	GAANNNNTTC	1 cut(s)	2376
XspI	CTAG	8 cut(s)	18, 45, 333, 2234, 2606, 2711, 2891, 3063
ZrmI	AGTACT	2 cut(s)	16, 798
Zsp2I	ATGCAT	3 cut(s)	562, 791, 2727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.