Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Forward (+)

9564947 .. 9568281

Gene Structure 3335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3258 bp

ATGTGCTGCTGTAGTACTACTACTAGTCTTGCTTATACTGACACCACCACTAGTAGTAGTAGGATATTTGCTATAACCACCCACACTCCTCCTCCTGTTCTACATCAACCAAAATTAAAGAAGGCCGCAGCAGCAGGAGGTGGTGGTGGTGAAGAAGAAAAGCCCAAAACTTCAGTGTCTTCTGAGGAAGTTGTGAGGGTTCTGAAGTCCATTTCAGACCCGACTTCTGCCTTTTCATTCTTTAAGTCCATTGCTGAGTTGCCTAGTGTGATTCACACCACTGAAACTTGCAATTACATGCTTCAACTCTTGGGTGTTCATAGGAGGGTGGATGATATGGCTTTTGTGTTTGATTTGATGCAAAAGCATATCGTAAACAGGAGTGTAGACACTTACCTCATTATATTTAAGGGTCTTAATATAAGAGGTGGGATTCGAGCAGCCCCGTATGCTCTTGGAAGGTTGCGGAAAAATGGGTTTATCTTGAACGCATATTCGTACAATGGCTTGATCTATATGCTTATCCAGTCTGGCTATTGTAGGGAGGCTCTGGAGGTATACCAAAGGGTGGTGTCAGAGGGACTTAAGCCGAGCCTCAAGACTTACTCAGCACTTATGGTGGCATTGGGAAAGAGAAGGGATGTTCAAACTGTTATGGGCTTACTAAAAGAGATGGAAACTTTGGGGCTCAGGCCTAATGTTTATACTTTCACTATATGCATCAGAGTACTCGGGACAGCGGGGAAAATCGATGAGGCATATGAAATTTTCAAGAGAATGGATGATGAGGGATGTGGCCCCGACGTTATCACTTATACTGTTCTCATTGATGCTCTTTGTAATGCAGGTAAACTTGATAATGCCAAGAAGTTGTTTGCAAATATGAAAGCAAGTGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGTGATACTAAAGACTTGGACACAGTAAAAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTTACTTTCACTATACTGGTTGATTCTTTATGCAAAGCTGGAAATGTAGATGAGGCATTCAATATGTTGGATATCATGAGGAAAGAAGGGGTCTCACCAAATCTTCATACCTACAACACGTTAATTTGTGGACTTCTGCGGTTATGTAGGTTGGATGAGGCATTGGAACTCTTCAACAGTATGGATTCTCTTGGTGTTGCACCTACTGCTTACACATACATCCTTTTCATTGACTATTATGGAAAGTCTGGTGACTCGGGAAAAGCTATTGAGGCATTTGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCTTTGTATGGACTTGCTGAGGCGGGTAGACTTCAAGATGCAAAACATATTTATGATGAGCTTATATACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAAGGTGGGGCAAATAGATGAAGCCATCAAGTTACTCTCAGAGATGGAAAGAAATGGGTGTGAGGCTGATGTCATCATAGTTAATTCGTTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCAGAAAAGCTATTGAAATGTTTGAGAATATGACTGAACAAGGGTGTCCTCCAAATGCAATAACTTTCAACACACTCCTGAATTGCCTTTGCAAGAATGATGAGGTCAATTTGGCCTTGAAAATGCTTTGCAACATGACCGTGATGAATTGCTGTCCTGATGTTTTGACCTATAACACTATAATTTATGGCTTAATCAGAGAAAACAGAATTGATTATGCATTCTGGTTCTTCCATCAGATGAAGAAACGCCTATTTCCTGATCATATAACATTGTGCACCCTCCTTCCGGGTGTAGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTGCTGAGGACTTCGCATATCAGGTTGGAGTTCAAGCAGACAGGCCTTTTTGGGAAGATTTGATTGGAGTGGTTGTGATTCAAGCTGAAGTAGACCGAGCCATTTTATTTGCTGAAGGGTTGATTTCTGAGAGGATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTAGGAAAACTCTTGATGCTCAGAAATTGTTTGCAAAGTTTACTGGAACTCTTGGAGTTAAGCCAACACTAGAAGCATATAACTGTTTGATCGAATGGCTTCTTAAAGACCATTTCACTGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCCCCTGATGTATTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGACGAGATGATTTGCAGGGGATACAAGCCTAACACCATAACGCACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAGATCTATATTATGATCTTGTAAGTGGTGATTTTTCTCCTTCTCCTTGTACATACGGCCCTCTCATAGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGATGTAAGCCTAATTGTGCGATCTTCAATATTCTTATAAATGGTTTTTCGAAAACAGGTGATGTGGAAACTGCTTGCGAGTTGTTTAAAAGGATGATTAAAGAAGGAATAAGACCAGACCTGAAGTCGTACACCATTCTCATGGATTGCTATTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTAAGACGAAGTGGCCTCGATCCTGACTCAGTTTCCTACAACCTTATGATTAATGGACTTGGAAGATCACGGAGGATGGAGGAAGCTCTCGCTCTTTATGATGAAATGCGGACTAGAAGAATTACTCCTGATATTTTCACCTACAATTCATTAATACTCAACCTTGGACTTGTTGGAATGGTGGAGCAAGCAGGAAGGATTTATAAAGAGCTACAACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTCATTCGGCTGCATAGCACTTCTGGAAATCCAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGTAGGAACATATGCACAGCTTCCCAATCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1085

Amino Acids

121.73

Weight (kDa)

5.45

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	150 - 260	6.6e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	156 - 212	1.1e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	157 - 255	4.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	201 - 244	8.5e-08	PPR repeat family
PPR_3	PF13812	221 - 279	6.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	229 - 260	4.4e-06	PPR repeat
TPR_24	PF23276	239 - 336	5.3e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	241 - 281	1.1e-10	PPR repeat family
PPR_3	PF13812	260 - 314	4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	264 - 296	1.5e-11	PPR repeat
PPR_2	PF13041	267 - 314	3.7e-15	PPR repeat family
PPR	PF01535	270 - 299	2e-06	PPR repeat
PPR_3	PF13812	290 - 345	2.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	305 - 351	5e-10	PPR repeat family
PPR_long	PF17177	318 - 419	1.2e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	328 - 381	5.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	334 - 366	1.5e-13	PPR repeat
PPR_2	PF13041	337 - 385	8.7e-17	PPR repeat family
PPR	PF01535	340 - 370	5e-07	PPR repeat
PPR_1	PF12854	369 - 400	1.7e-07	PPR repeat
PPR_2	PF13041	375 - 416	8.4e-11	PPR repeat family
PPR	PF01535	376 - 405	3.9e-06	PPR repeat
PPR_3	PF13812	433 - 490	5.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	442 - 491	9.4e-10	PPR repeat family
PPR_1	PF12854	474 - 506	1.2e-09	PPR repeat
PPR_2	PF13041	477 - 514	7.6e-12	PPR repeat family
TPR_24	PF23276	478 - 574	7.9e-08	Fungal tetratrico peptide repeats
PPR	PF01535	480 - 510	2.9e-09	PPR repeat
PPR_3	PF13812	500 - 561	3.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	508 - 541	1.6e-06	PPR repeat
PPR_2	PF13041	513 - 556	1.9e-11	PPR repeat family
PPR_1	PF12854	545 - 576	1.3e-08	PPR repeat
PPR_2	PF13041	547 - 596	7.6e-19	PPR repeat family
PPR	PF01535	550 - 580	1.7e-07	PPR repeat
PPR_3	PF13812	571 - 626	4.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	579 - 610	3e-09	PPR repeat
PPR_2	PF13041	582 - 630	6.3e-13	PPR repeat family
PPR_1	PF12854	613 - 646	2e-08	PPR repeat
PPR_2	PF13041	617 - 664	5.8e-09	PPR repeat family
PPR_2	PF13041	760 - 805	9.2e-14	PPR repeat family
PPR_3	PF13812	782 - 841	3.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	790 - 821	5.3e-06	PPR repeat
PPR_2	PF13041	793 - 842	8.8e-14	PPR repeat family
PPR_3	PF13812	855 - 910	2.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	861 - 891	1.4e-07	PPR repeat
PPR_2	PF13041	863 - 899	5.3e-08	PPR repeat family
PPR	PF01535	867 - 896	5.3e-06	PPR repeat
PPR_long	PF17177	882 - 972	3.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	895 - 926	4.7e-09	PPR repeat
PPR_2	PF13041	901 - 947	3e-14	PPR repeat family
PPR	PF01535	902 - 931	1e-07	PPR repeat
TPR_24	PF23276	911 - 1030	1.7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	922 - 981	3.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	930 - 960	6.1e-08	PPR repeat
PPR	PF01535	937 - 966	2.2e-07	PPR repeat
PPR_2	PF13041	937 - 981	8e-13	PPR repeat family
PPR_3	PF13812	958 - 1012	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	965 - 997	2.1e-08	PPR repeat
PPR_2	PF13041	968 - 1012	2.6e-15	PPR repeat family
PPR	PF01535	971 - 1000	3.2e-08	PPR repeat
PPR_long	PF17177	976 - 1079	6.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	1026 - 1079	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	1038 - 1079	3.6e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1446, 2720, 3084
Acc36I	ACCTGC	1 cut(s)	836
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccI	GTMKAC	5 cut(s)	387, 558, 1375, 2115, 3186
AccIII	TCCGGA	1 cut(s)	1429
AciI	CCGC	7 cut(s)	126, 466, 740, 1156, 1370, 2989, 3207
AclWI	GGATC	2 cut(s)	2349, 2894
AcoI	YGGCCR	1 cut(s)	1582
AcsI	RAATTY	2 cut(s)	765, 974
AcuI	CTGAAG	5 cut(s)	156, 224, 2130, 2157, 2825
AfaI	GTAC	6 cut(s)	16, 500, 729, 2206, 2599, 2813
AfiI	CCNNNNNNNGG	4 cut(s)	568, 1981, 2542, 3224
AflII	CTTAAG	1 cut(s)	584
AflIII	ACRYGT	2 cut(s)	1134, 2207
AhdI	GACNNNNNGTC	1 cut(s)	2806
AhlI	ACTAGT	2 cut(s)	23, 50
AjnI	CCWGG	1 cut(s)	2838
AjuI	GAANNNNNNNTTGG	2 cut(s)	2070, 2102
Alw21I	GWGCWC	1 cut(s)	1973
Alw26I	GTCTC	1 cut(s)	1114
Alw44I	GTGCAC	1 cut(s)	1969
AlwI	GGATC	2 cut(s)	2349, 2894
Ama87I	CYCGRG	3 cut(s)	731, 1273, 1311
Aor13HI	TCCGGA	1 cut(s)	1429
AoxI	GGCC	8 cut(s)	123, 692, 796, 1582, 1806, 2066, 2605, 2893
ApaLI	GTGCAC	1 cut(s)	1969
ApeKI	GCWGC	8 cut(s)	6, 128, 131, 440, 928, 1670, 3145, 3210
ApoI	RAATTY	2 cut(s)	765, 974
AseI	ATTAAT	2 cut(s)	2931, 3032
Asp700I	GAANNNNTTC	1 cut(s)	2307
AspLEI	GCGC	1 cut(s)	2004
AspS9I	GGNCC	2 cut(s)	797, 2606
AsuC2I	CCSGG	1 cut(s)	1983
AsuHPI	GGTGA	7 cut(s)	161, 1104, 1280, 2380, 2588, 2753, 3010
AsuII	TTCGAA	1 cut(s)	2732
AvaI	CYCGRG	3 cut(s)	731, 1273, 1311
BaeGI	GKGCMC	2 cut(s)	1973, 2377
BanII	GRGCYC	1 cut(s)	690
BbsI	GAAGAC	2 cut(s)	171, 2644
Bbv12I	GWGCWC	1 cut(s)	1973
BbvCI	CCTCAGC	2 cut(s)	1365, 2028
BbvI	GCAGC	7 cut(s)	140, 143, 452, 915, 1657, 3132, 3197
BceAI	ACGGC	1 cut(s)	2620
BciT130I	CCWGG	1 cut(s)	2840
BciVI	GTATCC	1 cut(s)	2468
BclI	TGATCA	1 cut(s)	1954
BcnI	CCSGG	1 cut(s)	1983
BcoDI	GTCTC	1 cut(s)	1114
BcuI	ACTAGT	2 cut(s)	23, 50
BfaI	CTAG	8 cut(s)	24, 51, 264, 2165, 2279, 2537, 2642, 2994
BfmI	CTRYAG	4 cut(s)	10, 1465, 2547, 3211
BfrI	CTTAAG	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	836
BfuI	GTATCC	1 cut(s)	2468
BglII	AGATCT	1 cut(s)	2551
BmcAI	AGTACT	2 cut(s)	16, 729
Bme1390I	CCNGG	2 cut(s)	1983, 2840
BmeRI	GACNNNNNGTC	1 cut(s)	2806
BmeT110I	CYCGRG	3 cut(s)	731, 1273, 1311
BmgT120I	GGNCC	2 cut(s)	797, 2606
BmiI	GGNNCC	1 cut(s)	799
BmrFI	CCNGG	2 cut(s)	1983, 2840
BmsI	GCATC	9 cut(s)	348, 729, 820, 1375, 2002, 2215, 2398, 2848, 3163
BpiI	GAAGAC	2 cut(s)	171, 2644
BpmI	CTGGAG	3 cut(s)	572, 1000, 2497
Bpu10I	CCTNAGC	3 cut(s)	689, 1365, 2028
Bpu14I	TTCGAA	1 cut(s)	2732
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	1983
Bsa29I	ATCGAT	1 cut(s)	750
BsaAI	YACGTR	1 cut(s)	2210
BsaI	GGTCTC	1 cut(s)	1114
BsaJI	CCNNGG	1 cut(s)	3043
BsaWI	WCCGGW	1 cut(s)	1429
BsaXI	ACNNNNNCTCC	6 cut(s)	70, 76, 100, 106, 2082, 2112
Bsc4I	CCNNNNNNNGG	4 cut(s)	568, 1981, 2542, 3224
Bse1I	ACTGG	6 cut(s)	526, 1038, 1671, 2257, 2514, 3106
Bse3DI	GCAATG	2 cut(s)	249, 2658
BseAI	TCCGGA	1 cut(s)	1429
BseBI	CCWGG	1 cut(s)	2840
BseCI	ATCGAT	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	3043
BseLI	CCNNNNNNNGG	4 cut(s)	568, 1981, 2542, 3224
BseMI	GCAATG	2 cut(s)	249, 2658
BseNI	ACTGG	6 cut(s)	526, 1038, 1671, 2257, 2514, 3106
BseRI	GAGGAG	4 cut(s)	78, 81, 2681, 2891
BseSI	GKGCMC	2 cut(s)	1973, 2377
BseXI	GCAGC	7 cut(s)	140, 143, 452, 915, 1657, 3132, 3197
BshFI	GGCC	8 cut(s)	125, 694, 798, 1584, 1808, 2068, 2607, 2895
BshVI	ATCGAT	1 cut(s)	750
BsiHKAI	GWGCWC	1 cut(s)	1973
BsiHKCI	CYCGRG	3 cut(s)	731, 1273, 1311
BsiSI	CCGG	2 cut(s)	1430, 1982
BslFI	GGGAC	3 cut(s)	594, 748, 3201
BslI	CCNNNNNNNGG	4 cut(s)	568, 1981, 2542, 3224
BsmAI	GTCTC	1 cut(s)	1114
BsmFI	GGGAC	3 cut(s)	594, 748, 3201
BsmI	GAATGC	2 cut(s)	1073, 1913
BsnI	GGCC	8 cut(s)	125, 694, 798, 1584, 1808, 2068, 2607, 2895
Bso31I	GGTCTC	1 cut(s)	1114
BsoBI	CYCGRG	3 cut(s)	731, 1273, 1311
Bsp119I	TTCGAA	1 cut(s)	2732
Bsp1286I	GDGCHC	3 cut(s)	690, 1973, 2377
Bsp13I	TCCGGA	1 cut(s)	1429
Bsp1407I	TGTACA	2 cut(s)	2204, 2597
Bsp143I	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
BspACI	CCGC	7 cut(s)	126, 466, 740, 1156, 1370, 2989, 3207
BspANI	GGCC	8 cut(s)	125, 694, 798, 1584, 1808, 2068, 2607, 2895
BspDI	ATCGAT	1 cut(s)	750
BspEI	TCCGGA	1 cut(s)	1429
BspHI	TCATGA	1 cut(s)	1092
BspLI	GGNNCC	1 cut(s)	799
BspMAI	CTGCAG	1 cut(s)	3215
BspMI	ACCTGC	1 cut(s)	836
BspPI	GGATC	2 cut(s)	2349, 2894
BspT104I	TTCGAA	1 cut(s)	2732
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	1114
BsrDI	GCAATG	2 cut(s)	249, 2658
BsrGI	TGTACA	2 cut(s)	2204, 2597
BsrI	ACTGG	6 cut(s)	526, 1038, 1671, 2257, 2514, 3106
BssECI	CCNNGG	1 cut(s)	3043
BssMI	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
BssNAI	GTATAC	1 cut(s)	559
BssT1I	CCWWGG	1 cut(s)	3043
Bst1107I	GTATAC	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	2840
Bst4CI	ACNGT	8 cut(s)	652, 820, 967, 1196, 1418, 1645, 1834, 2294
Bst6I	CTCTTC	2 cut(s)	1193, 2842
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstAUI	TGTACA	2 cut(s)	2204, 2597
BstBAI	YACGTR	1 cut(s)	2210
BstBI	TTCGAA	1 cut(s)	2732
BstC8I	GCNNGC	4 cut(s)	1582, 2368, 2758, 3069
BstHHI	GCGC	1 cut(s)	2004
BstKTI	GATC	9 cut(s)	513, 1957, 2301, 2344, 2554, 2566, 2706, 2902, 2948
BstMAI	GTCTC	1 cut(s)	1114
BstMBI	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 449, 1223, 1289, 1343, 2372
BstNI	CCWGG	1 cut(s)	2840
BstNSI	RCATGY	2 cut(s)	301, 1570
BstSCI	CCNGG	2 cut(s)	1981, 2838
BstSFI	CTRYAG	4 cut(s)	10, 1465, 2547, 3211
BstSLI	GKGCMC	2 cut(s)	1973, 2377
BstV1I	GCAGC	7 cut(s)	140, 143, 452, 915, 1657, 3132, 3197
BstV2I	GAAGAC	2 cut(s)	171, 2644
BstX2I	RGATCY	2 cut(s)	2341, 2551
BstXI	CCANNNNNNTGG	1 cut(s)	2824
BstYI	RGATCY	2 cut(s)	2341, 2551
BstZ17I	GTATAC	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	750
BsuI	GTATCC	1 cut(s)	2468
BsuRI	GGCC	8 cut(s)	125, 694, 798, 1584, 1808, 2068, 2607, 2895
BsuTUI	ATCGAT	1 cut(s)	750
BtsIMutI	CAGTG	5 cut(s)	180, 279, 1423, 2325, 2433
BveI	ACCTGC	1 cut(s)	836
Cac8I	GCNNGC	4 cut(s)	1582, 2368, 2758, 3069
CciI	TCATGA	1 cut(s)	1092
CfoI	GCGC	1 cut(s)	2004
Cfr13I	GGNCC	2 cut(s)	797, 2606
ClaI	ATCGAT	1 cut(s)	750
Csp6I	GTAC	6 cut(s)	15, 499, 728, 2205, 2598, 2812
CviAII	CATG	9 cut(s)	298, 1093, 1450, 1567, 1599, 1828, 2414, 2824, 3196
CviQI	GTAC	6 cut(s)	15, 499, 728, 2205, 2598, 2812
DpnI	GATC	9 cut(s)	512, 1956, 2300, 2343, 2553, 2565, 2705, 2901, 2947
DpnII	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
DraI	TTTAAA	1 cut(s)	2770
DriI	GACNNNNNGTC	1 cut(s)	2806
EaeI	YGGCCR	1 cut(s)	1582
Eam1104I	CTCTTC	2 cut(s)	1193, 2842
Eam1105I	GACNNNNNGTC	1 cut(s)	2806
EarI	CTCTTC	2 cut(s)	1193, 2842
Eco130I	CCWWGG	1 cut(s)	3043
Eco147I	AGGCCT	2 cut(s)	694, 2068
Eco24I	GRGCYC	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	1114
Eco32I	GATATC	1 cut(s)	1090
Eco57I	CTGAAG	5 cut(s)	156, 224, 2130, 2157, 2825
Eco88I	CYCGRG	3 cut(s)	731, 1273, 1311
EcoRI	GAATTC	1 cut(s)	974
EcoRII	CCWGG	1 cut(s)	2838
EcoRV	GATATC	1 cut(s)	1090
EcoT14I	CCWWGG	1 cut(s)	3043
EcoT22I	ATGCAT	3 cut(s)	722, 1915, 2658
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	3043
FaeI	CATG	9 cut(s)	301, 1096, 1453, 1570, 1602, 1831, 2417, 2827, 3199
FaqI	GGGAC	3 cut(s)	594, 748, 3201
FatI	CATG	9 cut(s)	297, 1092, 1449, 1566, 1598, 1827, 2413, 2823, 3195
FauI	CCCGC	2 cut(s)	733, 1363
FauNDI	CATATG	2 cut(s)	760, 3232
FbaI	TGATCA	1 cut(s)	1954
FblI	GTMKAC	5 cut(s)	387, 558, 1375, 2115, 3186
FriOI	GRGCYC	1 cut(s)	690
FspBI	CTAG	8 cut(s)	24, 51, 264, 2165, 2279, 2537, 2642, 2994
GlaI	GCGC	1 cut(s)	2003
GsuI	CTGGAG	3 cut(s)	572, 1000, 2497
HaeIII	GGCC	8 cut(s)	125, 694, 798, 1584, 1808, 2068, 2607, 2895
HapII	CCGG	2 cut(s)	1430, 1982
HhaI	GCGC	1 cut(s)	2004
Hin1II	CATG	9 cut(s)	301, 1096, 1453, 1570, 1602, 1831, 2417, 2827, 3199
Hin6I	GCGC	1 cut(s)	2002
HinP1I	GCGC	1 cut(s)	2002
HindIII	AAGCTT	1 cut(s)	2334
HinfI	GANTC	9 cut(s)	271, 433, 1040, 1202, 1271, 1433, 2101, 2171, 2906
HpaII	CCGG	2 cut(s)	1430, 1982
HphI	GGTGA	7 cut(s)	161, 1104, 1280, 2380, 2588, 2753, 3010
Hpy99I	CGWCG	1 cut(s)	806
HpyCH4III	ACNGT	8 cut(s)	652, 820, 967, 1196, 1418, 1645, 1834, 2294
HpyCH4IV	ACGT	3 cut(s)	804, 1136, 2209
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 449, 1223, 1289, 1343, 2372
HpySE526I	ACGT	3 cut(s)	804, 1136, 2209
Hsp92II	CATG	9 cut(s)	301, 1096, 1453, 1570, 1602, 1831, 2417, 2827, 3199
HspAI	GCGC	1 cut(s)	2002
Kpn2I	TCCGGA	1 cut(s)	1429
Ksp22I	TGATCA	1 cut(s)	1954
Kzo9I	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
LmnI	GCTCC	2 cut(s)	1012, 3064
Lsp1109I	GCAGC	7 cut(s)	140, 143, 452, 915, 1657, 3132, 3197
LweI	GCATC	9 cut(s)	348, 729, 820, 1375, 2002, 2215, 2398, 2848, 3163
MaeI	CTAG	8 cut(s)	24, 51, 264, 2165, 2279, 2537, 2642, 2994
MaeII	ACGT	3 cut(s)	804, 1136, 2209
MaeIII	GTNAC	7 cut(s)	913, 1018, 1268, 1438, 1500, 1648, 2400
MalI	GATC	9 cut(s)	512, 1956, 2300, 2343, 2553, 2565, 2705, 2901, 2947
MboI	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
MflI	RGATCY	2 cut(s)	2341, 2551
MhlI	GDGCHC	3 cut(s)	690, 1973, 2377
MlyI	GAGTC	2 cut(s)	1265, 2900
MmeI	TCCRAC	5 cut(s)	1065, 1149, 1664, 2029, 3034
Mph1103I	ATGCAT	3 cut(s)	722, 1915, 2658
MroI	TCCGGA	1 cut(s)	1429
MroXI	GAANNNNTTC	1 cut(s)	2307
MslI	CAYNNNNRTG	4 cut(s)	1398, 1454, 1832, 2822
MspA1I	CMGCKG	1 cut(s)	740
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	2 cut(s)	1430, 1982
MspR9I	CCNGG	2 cut(s)	1983, 2840
Mva1269I	GAATGC	2 cut(s)	1073, 1913
MvaI	CCWGG	1 cut(s)	2840
MwoI	GCNNNNNNNGC	6 cut(s)	131, 449, 1223, 1289, 1343, 2372
NciI	CCSGG	1 cut(s)	1983
NdeI	CATATG	2 cut(s)	760, 3232
NdeII	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
NlaIII	CATG	9 cut(s)	301, 1096, 1453, 1570, 1602, 1831, 2417, 2827, 3199
NlaIV	GGNNCC	1 cut(s)	799
NmeAIII	GCCGAG	2 cut(s)	615, 1610
NmuCI	GTSAC	2 cut(s)	1268, 1648
NsiI	ATGCAT	3 cut(s)	722, 1915, 2658
NspI	RCATGY	2 cut(s)	301, 1570
NspV	TTCGAA	1 cut(s)	2732
PaeR7I	CTCGAG	1 cut(s)	1311
PagI	TCATGA	1 cut(s)	1092
PceI	AGGCCT	2 cut(s)	694, 2068
PctI	GAATGC	2 cut(s)	1073, 1913
PdmI	GAANNNNTTC	1 cut(s)	2307
PfeI	GAWTC	7 cut(s)	271, 433, 1040, 1202, 1433, 2101, 2171
PflMI	CCANNNNNTGG	1 cut(s)	568
PleI	GAGTC	2 cut(s)	1265, 2900
PpsI	GAGTC	2 cut(s)	1265, 2900
Ppu21I	YACGTR	1 cut(s)	2210
PshBI	ATTAAT	2 cut(s)	2931, 3032
PsiI	TTATAA	3 cut(s)	1446, 2720, 3084
Psp6I	CCWGG	1 cut(s)	2838
PspGI	CCWGG	1 cut(s)	2838
PspN4I	GGNNCC	1 cut(s)	799
PspPI	GGNCC	2 cut(s)	797, 2606
PspXI	VCTCGAGB	1 cut(s)	1311
PstI	CTGCAG	1 cut(s)	3215
PsuI	RGATCY	2 cut(s)	2341, 2551
RsaI	GTAC	6 cut(s)	16, 500, 729, 2206, 2599, 2813
RsaNI	GTAC	6 cut(s)	15, 499, 728, 2205, 2598, 2812
RseI	CAYNNNNRTG	4 cut(s)	1398, 1454, 1832, 2822
Sau3AI	GATC	9 cut(s)	510, 1954, 2298, 2341, 2551, 2563, 2703, 2899, 2945
Sau96I	GGNCC	2 cut(s)	797, 2606
ScaI	AGTACT	2 cut(s)	16, 729
SchI	GAGTC	2 cut(s)	1265, 2900
ScrFI	CCNGG	2 cut(s)	1983, 2840
SduI	GDGCHC	3 cut(s)	690, 1973, 2377
SfaNI	GCATC	9 cut(s)	348, 729, 820, 1375, 2002, 2215, 2398, 2848, 3163
SfcI	CTRYAG	4 cut(s)	10, 1465, 2547, 3211
Sfr274I	CTCGAG	1 cut(s)	1311
SfuI	TTCGAA	1 cut(s)	2732
SlaI	CTCGAG	1 cut(s)	1311
SmiMI	CAYNNNNRTG	4 cut(s)	1398, 1454, 1832, 2822
SmlI	CTYRAG	3 cut(s)	584, 596, 1311
SmoI	CTYRAG	3 cut(s)	584, 596, 1311
SpeI	ACTAGT	2 cut(s)	23, 50
SseBI	AGGCCT	2 cut(s)	694, 2068
SsiI	CCGC	7 cut(s)	126, 466, 740, 1156, 1370, 2989, 3207
SspI	AATATT	2 cut(s)	1330, 2713
SspMI	CTAG	8 cut(s)	24, 51, 264, 2165, 2279, 2537, 2642, 2994
StuI	AGGCCT	2 cut(s)	694, 2068
StyD4I	CCNGG	2 cut(s)	1981, 2838
StyI	CCWWGG	1 cut(s)	3043
TaaI	ACNGT	8 cut(s)	652, 820, 967, 1196, 1418, 1645, 1834, 2294
TaiI	ACGT	3 cut(s)	807, 1139, 2212
TaqI	TCGA	7 cut(s)	436, 750, 1312, 2194, 2301, 2732, 2898
TaqII	GACCGA	1 cut(s)	2133
TatI	WGTACW	4 cut(s)	14, 727, 2204, 2597
TauI	GCSGC	2 cut(s)	128, 3210
TfiI	GAWTC	7 cut(s)	271, 433, 1040, 1202, 1433, 2101, 2171
TscAI	CASTG	5 cut(s)	180, 286, 1423, 2332, 2440
TseFI	GTSAC	2 cut(s)	1268, 1648
TseI	GCWGC	8 cut(s)	6, 128, 131, 440, 928, 1670, 3145, 3210
Tsp45I	GTSAC	2 cut(s)	1268, 1648
TspGWI	ACGGA	1 cut(s)	2965
TspRI	CASTG	5 cut(s)	180, 286, 1423, 2332, 2440
Van91I	CCANNNNNTGG	1 cut(s)	568
Vha464I	CTTAAG	1 cut(s)	584
VneI	GTGCAC	1 cut(s)	1969
VspI	ATTAAT	2 cut(s)	2931, 3032
XapI	RAATTY	2 cut(s)	765, 974
XceI	RCATGY	2 cut(s)	301, 1570
XhoI	CTCGAG	1 cut(s)	1311
XmiI	GTMKAC	5 cut(s)	387, 558, 1375, 2115, 3186
XmnI	GAANNNNTTC	1 cut(s)	2307
XspI	CTAG	8 cut(s)	24, 51, 264, 2165, 2279, 2537, 2642, 2994
ZrmI	AGTACT	2 cut(s)	16, 729
Zsp2I	ATGCAT	3 cut(s)	722, 1915, 2658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.