Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Reverse (-)

63369104 .. 63371955

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG407400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGAAAGCAAGTGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGTGATAGTAAAGACTTGGACACAGTAAAAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTTACTTTCACTATACTGGTTGATTCTTTATGCAAAGCTGGAAATGTAGATGAGGCATTCAATATGTTGGATATCATGAGGAAAGAAGGGGTCTCACCAAATCTTCATACCTACAACACGTTAATTTGTGGACTTCTGCGGTTATGTAGGTTGGATGAGGCATTGGAACTCTTCAACAGTATGGATTCTCTTGGTGTTGCACCTACTGCTTACACATACATCCTTTTCATTGACTATTATGGAAAGTCTGGTGACTCGGGAAAAGCTATTGAGGCATTTGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCCTTGTATGGTCTTGCTGAGGAGGGTAGACTTCAAGATGCAAAACATATTTATGATGAGCTTATGTACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAAGGTGGGGCAAATAGATGAAGCCATCAAGTTACTCTCAGAGATGGAAAGAAATGGGTGTGAGGCTGATGTCATCATAGTTAATTCATTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCAGAAAAGCTATTGAAATGTTTGAGAATATGACTGAACAAGGGTGTCCTCCAAATGCAATAACTTTCAACACACTCCTGAATTGCCTTTGCAAGAATGATGAGGTCAATTTGGCCTTGAAAATGCTTTGCAAAATGACCGTGATGAATTGCTGTCCTGATGTTTTGACCTATAACACTATAATTTATGGCTTAATCAGAGAAAACAGAATTGATTATGCATTCTGGTTCTTCCATCAGATGAAGAAACGCCTATTTCCTGATCATATAACATTGTGCACCCTCCTTCCGGGTGTAGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTGCTGAGGACTTCGCATATCAGGTTGGGGTTCAAGCAGACAGGCCTTTTTGGGAAGATTTGATTGGAGGGGTTGTGATTCAAGCTGAAGTAGACCGAGCCATTTTATTTGCTGAAAGGTTGATTTCTGAGAGGATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTAGGAAAACTCTTGATGCTCAGAATTTGTTTGCAAAGTTTACTGGAACTCTTGGAGTTAAGCCAACACTAGAAGCATATAACTGTTTGATCGAATGGCTTCTTAAAGACCATTTCACTGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCCCCTGATGTATTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGATGAGATGATTTGCAGGGGATACAAGCCTAACACCATAACGCACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAGATCTATATTATGATCTTGTAAGTGGTGATTTTTCTCCTTCTCCTTGTACATACGGCCCTCTCATAGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGATGTAAGCCTAATTGTGCGATCTTCAATATTCTTATAAATGGTTTTTCGAAAACAGGTGATGTGGAAACTGCTTGCGAGTTGTTTAAAAGGATGATTAAAGAAGGAATAAGACCAGACCTGAAGTCGTACACCATTCTTGTGGATTGCTACTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTAAGACGAAGTGGCCTTGATCCGGATTCAGTTTCCTACAACCTTATGATTAATGGACTTGGAAGATCACGGAGGATGGAGGAAGCTCTCGCTCTTTATGATGAAATGCGGACTAGAAGAATTACTCCCGATATTTTCACCTACAATTCATTAATACTCAATCTTGGACTTGTTGGAATGGTGGAGCAAGCAGGAAGGATTTATAAAGAGCTACAACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTCATTCGGCTGCATAGCACTTCTGGAAATCCAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGTAGGAACATATGCACAGCTTCCCAATCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

791

Amino Acids

89.43

Weight (kDa)

4.98

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	1 - 52	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	8 - 57	7.7e-12	PPR repeat family
PPR_long	PF17177	24 - 139	2e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	34 - 87	4.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	40 - 72	1e-13	PPR repeat
PPR_2	PF13041	43 - 91	6e-17	PPR repeat family
PPR	PF01535	46 - 76	3.4e-07	PPR repeat
PPR_1	PF12854	75 - 106	1.2e-07	PPR repeat
PPR_2	PF13041	81 - 122	5.8e-11	PPR repeat family
PPR	PF01535	82 - 111	2.7e-06	PPR repeat
PPR_3	PF13812	138 - 196	3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	148 - 197	3.5e-10	PPR repeat family
TPR_24	PF23276	173 - 280	2.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	180 - 212	8.5e-10	PPR repeat
PPR_2	PF13041	183 - 220	5.3e-12	PPR repeat family
PPR	PF01535	186 - 216	2e-09	PPR repeat
PPR_long	PF17177	202 - 282	5.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	206 - 267	2.1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	214 - 247	1.1e-06	PPR repeat
PPR_2	PF13041	219 - 265	2.5e-12	PPR repeat family
PPR_1	PF12854	251 - 282	8.8e-09	PPR repeat
PPR_2	PF13041	253 - 302	5.2e-19	PPR repeat family
PPR	PF01535	256 - 286	1.2e-07	PPR repeat
PPR_3	PF13812	277 - 332	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	285 - 317	3.6e-10	PPR repeat
PPR_2	PF13041	288 - 335	4.6e-13	PPR repeat family
PPR_1	PF12854	319 - 352	1.4e-08	PPR repeat
PPR_2	PF13041	323 - 370	3.9e-09	PPR repeat family
PPR_2	PF13041	466 - 511	6.3e-14	PPR repeat family
PPR_3	PF13812	488 - 547	2.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	496 - 527	3.7e-06	PPR repeat
PPR_2	PF13041	499 - 548	6.1e-14	PPR repeat family
PPR_2	PF13041	534 - 581	7.3e-06	PPR repeat family
PPR_3	PF13812	561 - 616	1.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	567 - 597	1e-07	PPR repeat
PPR_2	PF13041	569 - 605	3.7e-08	PPR repeat family
PPR	PF01535	573 - 602	3.6e-06	PPR repeat
PPR_long	PF17177	588 - 678	4e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	601 - 632	3.3e-09	PPR repeat
PPR_2	PF13041	607 - 653	4.4e-14	PPR repeat family
PPR	PF01535	608 - 637	7e-08	PPR repeat
TPR_24	PF23276	617 - 736	5.7e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	628 - 687	3.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	636 - 666	1.2e-08	PPR repeat
PPR	PF01535	643 - 672	3.9e-07	PPR repeat
PPR_2	PF13041	643 - 687	3.4e-12	PPR repeat family
PPR_3	PF13812	664 - 718	1.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	671 - 703	1.4e-08	PPR repeat
PPR_2	PF13041	674 - 718	1.8e-15	PPR repeat family
PPR	PF01535	677 - 706	2.2e-08	PPR repeat
PPR_long	PF17177	679 - 785	3.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	709 - 754	1.8e-09	PPR repeat family
PPR_3	PF13812	732 - 785	1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	744 - 785	2.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	564, 1838, 2202
AccI	GTMKAC	3 cut(s)	493, 1233, 2304
AccIII	TCCGGA	2 cut(s)	547, 2020
AciI	CCGC	3 cut(s)	274, 2107, 2325
AclWI	GGATC	2 cut(s)	1467, 2012
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	2 cut(s)	92, 1351
AcuI	CTGAAG	2 cut(s)	1248, 1943
AfaI	GTAC	4 cut(s)	533, 1324, 1717, 1931
AfiI	CCNNNNNNNGG	4 cut(s)	1099, 1660, 2020, 2342
AflIII	ACRYGT	2 cut(s)	252, 1325
AhdI	GACNNNNNGTC	1 cut(s)	1924
AjnI	CCWGG	1 cut(s)	1956
AjuI	GAANNNNNNNTTGG	2 cut(s)	1188, 1220
Alw21I	GWGCWC	1 cut(s)	1091
Alw26I	GTCTC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	1087
AlwI	GGATC	2 cut(s)	1467, 2012
Ama87I	CYCGRG	2 cut(s)	391, 429
Aor13HI	TCCGGA	2 cut(s)	547, 2020
AoxI	GGCC	5 cut(s)	700, 924, 1184, 1723, 2011
ApaLI	GTGCAC	1 cut(s)	1087
ApeKI	GCWGC	4 cut(s)	46, 788, 2263, 2328
ApoI	RAATTY	2 cut(s)	92, 1351
AseI	ATTAAT	2 cut(s)	2049, 2150
Asp700I	GAANNNNTTC	1 cut(s)	1425
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	1 cut(s)	1724
AsuC2I	CCSGG	1 cut(s)	1101
AsuHPI	GGTGA	6 cut(s)	222, 398, 1498, 1706, 1871, 2128
AsuII	TTCGAA	1 cut(s)	1850
AvaI	CYCGRG	2 cut(s)	391, 429
BaeGI	GKGCMC	2 cut(s)	1091, 1495
BbsI	GAAGAC	1 cut(s)	1762
Bbv12I	GWGCWC	1 cut(s)	1091
BbvCI	CCTCAGC	2 cut(s)	483, 1146
BbvI	GCAGC	4 cut(s)	33, 775, 2250, 2315
BccI	CCATC	9 cut(s)	110, 620, 625, 1053, 1109, 1730, 1783, 2068, 2311
BceAI	ACGGC	1 cut(s)	1738
BciT130I	CCWGG	1 cut(s)	1958
BciVI	GTATCC	1 cut(s)	1586
BclI	TGATCA	1 cut(s)	1072
BcnI	CCSGG	1 cut(s)	1101
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	5 cut(s)	1283, 1397, 1655, 1760, 2112
BfmI	CTRYAG	3 cut(s)	583, 1665, 2329
BfuI	GTATCC	1 cut(s)	1586
BglII	AGATCT	1 cut(s)	1669
BisI	GCNGC	5 cut(s)	47, 789, 2264, 2326, 2329
BlsI	GCNGC	5 cut(s)	48, 790, 2265, 2327, 2330
Bme1390I	CCNGG	2 cut(s)	1101, 1958
BmeRI	GACNNNNNGTC	1 cut(s)	1924
BmeT110I	CYCGRG	2 cut(s)	391, 429
BmgT120I	GGNCC	1 cut(s)	1724
BmrFI	CCNGG	2 cut(s)	1101, 1958
BmsI	GCATC	6 cut(s)	493, 1120, 1333, 1516, 1966, 2281
BpiI	GAAGAC	1 cut(s)	1762
BpmI	CTGGAG	2 cut(s)	118, 1615
Bpu10I	CCTNAGC	2 cut(s)	483, 1146
Bpu14I	TTCGAA	1 cut(s)	1850
BpuMI	CCSGG	1 cut(s)	1101
BsaAI	YACGTR	1 cut(s)	1328
BsaI	GGTCTC	1 cut(s)	232
BsaWI	WCCGGW	2 cut(s)	547, 2020
BsaXI	ACNNNNNCTCC	2 cut(s)	1200, 1230
Bsc4I	CCNNNNNNNGG	4 cut(s)	1099, 1660, 2020, 2342
Bse1I	ACTGG	5 cut(s)	156, 789, 1375, 1632, 2224
Bse3DI	GCAATG	1 cut(s)	1776
BseAI	TCCGGA	2 cut(s)	547, 2020
BseBI	CCWGG	1 cut(s)	1958
BseGI	GGATG	9 cut(s)	295, 354, 426, 1120, 1135, 1808, 1899, 1978, 2079
BseLI	CCNNNNNNNGG	4 cut(s)	1099, 1660, 2020, 2342
BseMI	GCAATG	1 cut(s)	1776
BseMII	CTCAG	5 cut(s)	474, 639, 1137, 1260, 1361
BseNI	ACTGG	5 cut(s)	156, 789, 1375, 1632, 2224
BseRI	GAGGAG	3 cut(s)	500, 1799, 2009
BseSI	GKGCMC	2 cut(s)	1091, 1495
BseXI	GCAGC	4 cut(s)	33, 775, 2250, 2315
BshFI	GGCC	5 cut(s)	702, 926, 1186, 1725, 2013
BsiHKAI	GWGCWC	1 cut(s)	1091
BsiHKCI	CYCGRG	2 cut(s)	391, 429
BsiSI	CCGG	3 cut(s)	548, 1100, 2021
BslFI	GGGAC	1 cut(s)	2319
BslI	CCNNNNNNNGG	4 cut(s)	1099, 1660, 2020, 2342
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	2319
BsmI	GAATGC	2 cut(s)	191, 1031
BsnI	GGCC	5 cut(s)	702, 926, 1186, 1725, 2013
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	391, 429
Bsp119I	TTCGAA	1 cut(s)	1850
Bsp1286I	GDGCHC	2 cut(s)	1091, 1495
Bsp13I	TCCGGA	2 cut(s)	547, 2020
Bsp1407I	TGTACA	3 cut(s)	531, 1322, 1715
Bsp143I	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
BspACI	CCGC	3 cut(s)	274, 2107, 2325
BspANI	GGCC	5 cut(s)	702, 926, 1186, 1725, 2013
BspCNI	CTCAG	5 cut(s)	475, 638, 1138, 1261, 1360
BspEI	TCCGGA	2 cut(s)	547, 2020
BspHI	TCATGA	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	2333
BspPI	GGATC	2 cut(s)	1467, 2012
BspT104I	TTCGAA	1 cut(s)	1850
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	1776
BsrGI	TGTACA	3 cut(s)	531, 1322, 1715
BsrI	ACTGG	5 cut(s)	156, 789, 1375, 1632, 2224
BssMI	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
Bst2UI	CCWGG	1 cut(s)	1958
Bst4CI	ACNGT	6 cut(s)	85, 314, 536, 763, 952, 1412
Bst6I	CTCTTC	2 cut(s)	311, 1960
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	3 cut(s)	531, 1322, 1715
BstBAI	YACGTR	1 cut(s)	1328
BstBI	TTCGAA	1 cut(s)	1850
BstC8I	GCNNGC	4 cut(s)	700, 1486, 1876, 2187
BstDEI	CTNAG	5 cut(s)	483, 625, 1146, 1269, 1347
BstF5I	GGATG	9 cut(s)	295, 354, 426, 1120, 1135, 1808, 1899, 1978, 2079
BstHHI	GCGC	1 cut(s)	1122
BstKTI	GATC	8 cut(s)	1075, 1419, 1462, 1672, 1684, 1824, 2020, 2066
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 407, 461, 1490
BstNI	CCWGG	1 cut(s)	1958
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	1099, 1956
BstSFI	CTRYAG	3 cut(s)	583, 1665, 2329
BstSLI	GKGCMC	2 cut(s)	1091, 1495
BstV1I	GCAGC	4 cut(s)	33, 775, 2250, 2315
BstV2I	GAAGAC	1 cut(s)	1762
BstX2I	RGATCY	2 cut(s)	1459, 1669
BstXI	CCANNNNNNTGG	1 cut(s)	1942
BstYI	RGATCY	2 cut(s)	1459, 1669
BsuI	GTATCC	1 cut(s)	1586
BsuRI	GGCC	5 cut(s)	702, 926, 1186, 1725, 2013
BtsCI	GGATG	9 cut(s)	295, 354, 426, 1120, 1135, 1808, 1899, 1978, 2079
BtsIMutI	CAGTG	3 cut(s)	541, 1443, 1551
Cac8I	GCNNGC	4 cut(s)	700, 1486, 1876, 2187
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	1122
Cfr13I	GGNCC	1 cut(s)	1724
Csp6I	GTAC	4 cut(s)	532, 1323, 1716, 1930
CviAII	CATG	6 cut(s)	211, 568, 685, 717, 1532, 2314
CviQI	GTAC	4 cut(s)	532, 1323, 1716, 1930
DdeI	CTNAG	5 cut(s)	483, 625, 1146, 1269, 1347
DpnI	GATC	8 cut(s)	1074, 1418, 1461, 1671, 1683, 1823, 2019, 2065
DpnII	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
DraI	TTTAAA	1 cut(s)	1888
DriI	GACNNNNNGTC	1 cut(s)	1924
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	311, 1960
Eam1105I	GACNNNNNGTC	1 cut(s)	1924
EarI	CTCTTC	2 cut(s)	311, 1960
Eco147I	AGGCCT	1 cut(s)	1186
Eco31I	GGTCTC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	1248, 1943
Eco88I	CYCGRG	2 cut(s)	391, 429
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	1956
EcoRV	GATATC	1 cut(s)	208
EcoT22I	ATGCAT	2 cut(s)	1033, 1776
FaeI	CATG	6 cut(s)	214, 571, 688, 720, 1535, 2317
FaqI	GGGAC	1 cut(s)	2319
FatI	CATG	6 cut(s)	210, 567, 684, 716, 1531, 2313
FauNDI	CATATG	1 cut(s)	2350
FbaI	TGATCA	1 cut(s)	1072
FblI	GTMKAC	3 cut(s)	493, 1233, 2304
Fnu4HI	GCNGC	5 cut(s)	47, 789, 2264, 2326, 2329
FokI	GGATG	9 cut(s)	302, 341, 433, 1127, 1142, 1815, 1906, 1985, 2086
Fsp4HI	GCNGC	5 cut(s)	47, 789, 2264, 2326, 2329
FspBI	CTAG	5 cut(s)	1283, 1397, 1655, 1760, 2112
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	5 cut(s)	47, 789, 2264, 2326, 2329
GsuI	CTGGAG	2 cut(s)	118, 1615
HaeIII	GGCC	5 cut(s)	702, 926, 1186, 1725, 2013
HapII	CCGG	3 cut(s)	548, 1100, 2021
HhaI	GCGC	1 cut(s)	1122
Hin1II	CATG	6 cut(s)	214, 571, 688, 720, 1535, 2317
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HindIII	AAGCTT	1 cut(s)	1452
HinfI	GANTC	7 cut(s)	158, 320, 389, 551, 1219, 1289, 2024
HpaII	CCGG	3 cut(s)	548, 1100, 2021
HphI	GGTGA	6 cut(s)	222, 398, 1498, 1706, 1871, 2128
Hpy188I	TCNGA	8 cut(s)	628, 815, 1010, 1050, 1270, 1299, 1350, 1648
HpyAV	CCTTC	6 cut(s)	215, 733, 1106, 1716, 1898, 2187
HpyCH4III	ACNGT	6 cut(s)	85, 314, 536, 763, 952, 1412
HpyCH4IV	ACGT	2 cut(s)	254, 1327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 407, 461, 1490
HpyF3I	CTNAG	5 cut(s)	483, 625, 1146, 1269, 1347
HpySE526I	ACGT	2 cut(s)	254, 1327
Hsp92II	CATG	6 cut(s)	214, 571, 688, 720, 1535, 2317
HspAI	GCGC	1 cut(s)	1120
Kpn2I	TCCGGA	2 cut(s)	547, 2020
Ksp22I	TGATCA	1 cut(s)	1072
Kzo9I	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
LmnI	GCTCC	2 cut(s)	130, 2182
Lsp1109I	GCAGC	4 cut(s)	33, 775, 2250, 2315
LweI	GCATC	6 cut(s)	493, 1120, 1333, 1516, 1966, 2281
MaeI	CTAG	5 cut(s)	1283, 1397, 1655, 1760, 2112
MaeII	ACGT	2 cut(s)	254, 1327
MaeIII	GTNAC	7 cut(s)	31, 136, 386, 556, 618, 766, 1518
MalI	GATC	8 cut(s)	1074, 1418, 1461, 1671, 1683, 1823, 2019, 2065
MboI	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
MflI	RGATCY	2 cut(s)	1459, 1669
MhlI	GDGCHC	2 cut(s)	1091, 1495
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	4 cut(s)	183, 267, 782, 2152
Mph1103I	ATGCAT	2 cut(s)	1033, 1776
MroI	TCCGGA	2 cut(s)	547, 2020
MroXI	GAANNNNTTC	1 cut(s)	1425
MslI	CAYNNNNRTG	3 cut(s)	516, 572, 1940
MspI	CCGG	3 cut(s)	548, 1100, 2021
MspR9I	CCNGG	2 cut(s)	1101, 1958
Mva1269I	GAATGC	2 cut(s)	191, 1031
MvaI	CCWGG	1 cut(s)	1958
MwoI	GCNNNNNNNGC	4 cut(s)	341, 407, 461, 1490
NciI	CCSGG	1 cut(s)	1101
NdeI	CATATG	1 cut(s)	2350
NdeII	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
NlaIII	CATG	6 cut(s)	214, 571, 688, 720, 1535, 2317
NmeAIII	GCCGAG	1 cut(s)	728
NmuCI	GTSAC	2 cut(s)	386, 766
NsiI	ATGCAT	2 cut(s)	1033, 1776
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	1850
PaeR7I	CTCGAG	1 cut(s)	429
PagI	TCATGA	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	1186
PctI	GAATGC	2 cut(s)	191, 1031
PdmI	GAANNNNTTC	1 cut(s)	1425
PfeI	GAWTC	6 cut(s)	158, 320, 551, 1219, 1289, 2024
PkrI	GCNGC	5 cut(s)	48, 790, 2265, 2327, 2330
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	1328
PshBI	ATTAAT	2 cut(s)	2049, 2150
PsiI	TTATAA	3 cut(s)	564, 1838, 2202
Psp6I	CCWGG	1 cut(s)	1956
PspGI	CCWGG	1 cut(s)	1956
PspPI	GGNCC	1 cut(s)	1724
PspXI	VCTCGAGB	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	2333
PsuI	RGATCY	2 cut(s)	1459, 1669
RsaI	GTAC	4 cut(s)	533, 1324, 1717, 1931
RsaNI	GTAC	4 cut(s)	532, 1323, 1716, 1930
RseI	CAYNNNNRTG	3 cut(s)	516, 572, 1940
SatI	GCNGC	5 cut(s)	47, 789, 2264, 2326, 2329
Sau3AI	GATC	8 cut(s)	1072, 1416, 1459, 1669, 1681, 1821, 2017, 2063
Sau96I	GGNCC	1 cut(s)	1724
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	1101, 1958
SduI	GDGCHC	2 cut(s)	1091, 1495
SfaNI	GCATC	6 cut(s)	493, 1120, 1333, 1516, 1966, 2281
SfcI	CTRYAG	3 cut(s)	583, 1665, 2329
Sfr274I	CTCGAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	1850
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	3 cut(s)	516, 572, 1940
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SseBI	AGGCCT	1 cut(s)	1186
SsiI	CCGC	3 cut(s)	274, 2107, 2325
SspI	AATATT	2 cut(s)	448, 1831
SspMI	CTAG	5 cut(s)	1283, 1397, 1655, 1760, 2112
StuI	AGGCCT	1 cut(s)	1186
StyD4I	CCNGG	2 cut(s)	1099, 1956
TaaI	ACNGT	6 cut(s)	85, 314, 536, 763, 952, 1412
TaiI	ACGT	2 cut(s)	257, 1330
TaqI	TCGA	4 cut(s)	430, 1312, 1419, 1850
TaqII	GACCGA	1 cut(s)	1251
TatI	WGTACW	3 cut(s)	531, 1322, 1715
TauI	GCSGC	1 cut(s)	2328
TfiI	GAWTC	6 cut(s)	158, 320, 551, 1219, 1289, 2024
TscAI	CASTG	3 cut(s)	541, 1450, 1558
TseFI	GTSAC	2 cut(s)	386, 766
TseI	GCWGC	4 cut(s)	46, 788, 2263, 2328
Tsp45I	GTSAC	2 cut(s)	386, 766
TspGWI	ACGGA	1 cut(s)	2083
TspRI	CASTG	3 cut(s)	541, 1450, 1558
VneI	GTGCAC	1 cut(s)	1087
VspI	ATTAAT	2 cut(s)	2049, 2150
XapI	RAATTY	2 cut(s)	92, 1351
XceI	RCATGY	1 cut(s)	688
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	3 cut(s)	493, 1233, 2304
XmnI	GAANNNNTTC	1 cut(s)	1425
XspI	CTAG	5 cut(s)	1283, 1397, 1655, 1760, 2112
Zsp2I	ATGCAT	2 cut(s)	1033, 1776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.