Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Reverse (-)

4329964 .. 4334017

Gene Structure 4054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3333 bp

ATGGAATTGTTGATTGTCTGCTCTTCAAGCATGTGCTGTAGCAGTGTAAATTACAGTGTTGCTTTCACTGACGATAGGATATTTGCTGGTTCATTGAAAGCTCGAAACTTTGGGAAGTTGAAGGTTTGGGGATGTGGGTCTTTGTCGAACTTGAAGAAAAACCGAAAAAAAGGGATGGGTTTTTGTGGGTTTGTGATGAAAAGGTCAGAGGAGGAGGTGGTGGTGGGGAAGAAAAGCCCGAAAATTTCAGTTTCTTCTGAGGAAGTTGTGAGGGTTTTGAAGTCAGCTTCGGACCCGAAATCTGCTTTAGCATTGTTTAAGTCTTTTGCTGAGTTGCCTAGTGTTGTTCACACCACTGAGACTTGCAATTACATGCTTGAAGTCTTGAGGGTTGATAGGAGAGTGGAGGATATGGCTTATGTGTTTGATTTGATGCAGAAGCAGATCATAAATAGGAGTTTGGAGACTTACCTTACTATCTTTAAGGGTCTTGATGTCAGAGGTGAGATTCGACAGGCACCATTCGCTCTTGAAGAGATGCGAAAAGCGGGGTTTGTATTGAATGCGTATTCGTACAATGGGTTGATCTATAATCTTATTCAGTCTGGATATTGTAGGGAGGCTTTGGAGGTTTATGAAAGAGTGGTGTCAGAAGGGATTAAGCCGAGTCTTAAGACTTACTCGGCACTTATGGTGGCACTGGGGAAAAGAAGGGATGTTAAAACTGTTATGAGCTTGCTAAATGAGATGGAAAGTTTGGGATTGAGGCCTAATGTTTATACTTTTACTATATGCATTAGAGTACTTGGGAGGGCGGGAAAAATTGACGAAGCGTATGAGGTTTTTAAGAGAATGGATGATGAGGGATGTGGCCCCGATGTTGTGACTTACACCGTTCTCATTGATGCTCTTTGTAACGCGGGTAAACTTGATAAGGCCAAGGAGTTGTTTGTAAAAATGAAAGCCAGTGGTCATAAGCCTGACCAAGTAACCTACATTACTTTGCTGGATAAGTTTAGTGACGGTAAAGACTTGGACACAGTGAAAGAATTTTGGAGTGAAATGGAAGCTGACGGTTATGCTCCTGATGTGGTTACTTTCACCATACTTGTCAATGCTTTATGCAAAGCTGGAAATGTTGATGAAGCATTTAATATGTTGGATACCATGAGAAAACAAGGGGTCTCACCGAATCTTCATACTTACAACACATTAATTGGTGGACTTCTGCGGTTATGTAGGTTGGACGAGGCATTGAAGCTTTTCAATAGTATTGACTGTCTGGGTGTTCCACCTACTGCTTACACATACATCCTTTTCATTGATTACTATGGAAAGTGTGGCGACTCTGGCAAAGCTATGGAGGCCTTCGAGAAGATGAAAAATAAAGGCATCGTTCCTAATATTGTTGCTTGTAATGCATCTTTGTACAGTCTTGCTGAAGAGGGTAGACTTCAAGAGGCACAGGATGTCTATAATGAGCTCAAATATTATGGGCTTTCTCCAGATTCAGTTACTTACAACATCATGATGAAGTGCTTTAGTAAGGTTGGGCAAATAGATGAAGCCATCGAGTTACTCTCAGAGATGGAAAGAAATGGGTGCGAAGCAGATGTAATTATTGTTAATTCTTTGATTGACATGCTTTACAAGGCTGACCGAGTAGATGAAGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAACACATTACTCGCTGCATTAGGCAAAGATGGAGAAGTCCAAAAGGCCATTGAAATGTTTGAGAATATGGCCGAACAAGGGTGTCCTCCAAACACAATAACTTTCAACACACTCCTGAACTGCCTTTGCAAGAATGACGAGGTTACTCTGGCCTTGAAAATGTTCTGCAAAATGACCACAATGAGTTGCAGTCCTGATGTTCTGACCTATAACACTATAATTTATGGCTTAATCAGAGAAAACAGAATTGATTATGCGTTCTGGTTCTTCCATCAGATGAAGAAATCACTACTTCCTGATCATATAACATTGTGTACCCTCCTACCCAGGGTAGTAAAGGATGGGCGTATTGAGGATGGTTTCAAAATTGCTGAGAACTTTGTGTATCAGGTTGGGGTACGAGCAGATAGGCCTTTTTGGGAAGATTTAATGGGAGGGATTTTGATTGAAGCTGAAATAGACAGAGCCATTTTATTTGCTGAAAGGTTGATCTCTGATAGGATTTGCCGGGATGACTCTGTACTGATTCCTCTACTTAGAGTTTTGTGTACGCAAAGGAAAGCTTTTGATGCGCATAAGGTATTTGAGAAATTTACGAAAACTCTTGGAATTAAGCCAACACTAGAAGCATGTAACTACTTGATTGAATGGCTTCTGAAAGATCATGCCGCTGAAAGAGCTTGGGATCTGTTTAAGGAGATGAAGAATGGTGGTTGTACCCCCGATGTATTCACCTACAACTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACCGAACTCTTTGAATTGTACGAGGAGATGATTTTTAGGGGATGCAAGCCTAACACCGTAACCCACAATATAGTCATCTCCAGTCTTGTGAAATCTGATAGCGTGGATGGTGCTATAGATTTATATTATGATCTCGTAAGTGGTGATTTCTCTCCCTCTCCTTGTACGTATGGTCCTCTCATAGATGGACTTTTCAAGTCAGGACGACTAGACGAAGCAATGCATTTCTTTGACGAGATGGCCGACTATGGATGCAAACCTAATTCTGCTATTTTTAATATTCTTATAAATGGGTTTGCGAAAACAGGTGATGCAGAAGCTGCTTGCGACTTGTTTAGAAGGATGATTAAAGAAGGGATAAGACCTGACCTGAAGTCTTACACCATTCTTGTGGATTGCCTCTGCCAGGCAGGGAGAGTGGATGATGCTGTGGACTATTTTGAGGAGTTAAAACAAAGTGGCCTCGATCCTGACTCCGTTTCTTACAACCTTATGATCAATGGACTTGGACGATCACGGAGGGTAGAGGAAGCACTCTCTCTTTATGATGAAATGCGGACTAGAGGAATCGCTCCTGATCTTTACACATACAATTCGTTAATACTCAATCTTGGACTTGTTGGAATGGTGGAGCAAGCGAGGAGGATTTATGAAGAACTACAACTTGTAGGCCTTGAACCTGATGTGTTTACCTACAATGCTCTCATCCGACTGTATAGCACATCCGGGGATCCAGATCATGCATATGCAGTTTACAAGAACATGATGGTTGGTGGCTGCAGCCCCAATGTAGGAACATTTGCACAGCTTCCCAACCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1111

Amino Acids

124.93

Weight (kDa)

5.25

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	176 - 285	1.1e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	176 - 285	8.8e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	177 - 237	8.4e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	207 - 337	9.6e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	222 - 269	5.8e-10	PPR repeat family
PPR_3	PF13812	245 - 303	3.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	254 - 285	8.5e-08	PPR repeat
PPR	PF01535	260 - 290	2e-06	PPR repeat
PPR_2	PF13041	266 - 306	8.5e-12	PPR repeat family
PPR_1	PF12854	289 - 321	3.3e-13	PPR repeat
PPR_3	PF13812	292 - 338	5.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	292 - 339	7.8e-16	PPR repeat family
PPR	PF01535	295 - 324	2e-08	PPR repeat
PPR_2	PF13041	334 - 376	2.6e-07	PPR repeat family
PPR_long	PF17177	344 - 449	1.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	353 - 407	1.5e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	359 - 391	4.7e-14	PPR repeat
PPR_2	PF13041	362 - 410	1e-17	PPR repeat family
TPR_24	PF23276	363 - 459	1.7e-06	Fungal tetratrico peptide repeats
PPR	PF01535	365 - 395	3.8e-07	PPR repeat
PPR_1	PF12854	394 - 423	6.5e-06	PPR repeat
PPR_2	PF13041	401 - 441	3e-09	PPR repeat family
PPR_2	PF13041	467 - 516	4.7e-12	PPR repeat family
TPR_24	PF23276	478 - 599	3e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	499 - 531	7.3e-10	PPR repeat
PPR_2	PF13041	502 - 539	2.2e-11	PPR repeat family
PPR	PF01535	505 - 535	2.6e-09	PPR repeat
PPR_long	PF17177	521 - 617	5.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	526 - 586	7.6e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	538 - 581	1.2e-10	PPR repeat family
PPR_1	PF12854	570 - 600	2.1e-08	PPR repeat
PPR_2	PF13041	572 - 621	5.9e-18	PPR repeat family
PPR	PF01535	575 - 605	9.3e-07	PPR repeat
PPR_3	PF13812	596 - 651	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	604 - 636	1.1e-09	PPR repeat
PPR_2	PF13041	607 - 655	1.8e-14	PPR repeat family
PPR_1	PF12854	639 - 671	7.1e-08	PPR repeat
PPR_2	PF13041	642 - 685	5.4e-08	PPR repeat family
PPR_2	PF13041	786 - 830	4.5e-13	PPR repeat family
PPR_3	PF13812	807 - 866	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	815 - 846	6.7e-06	PPR repeat
PPR_2	PF13041	818 - 867	1.4e-14	PPR repeat family
PPR_1	PF12854	886 - 916	2e-08	PPR repeat
PPR_2	PF13041	888 - 937	1e-12	PPR repeat family
PPR_long	PF17177	906 - 997	2e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	920 - 951	1.6e-07	PPR repeat
PPR_2	PF13041	923 - 972	9.1e-15	PPR repeat family
PPR	PF01535	927 - 956	8e-07	PPR repeat
TPR_24	PF23276	928 - 1020	1.5e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	947 - 1006	5.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	955 - 986	6.5e-09	PPR repeat
PPR	PF01535	962 - 991	1.5e-06	PPR repeat
PPR_2	PF13041	966 - 1006	7.1e-10	PPR repeat family
PPR_1	PF12854	990 - 1022	1.2e-08	PPR repeat
PPR_2	PF13041	993 - 1037	2.7e-16	PPR repeat family
PPR	PF01535	996 - 1026	2.6e-09	PPR repeat
PPR_long	PF17177	1000 - 1104	1.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	1016 - 1075	3.9e-10	Pentatricopeptide repeat domain
PPR_3	PF13812	1051 - 1104	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	1063 - 1103	5.3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2795
Acc16I	TGCGCA	1 cut(s)	2304
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	1450
AccII	CGCG	1 cut(s)	920
AciI	CCGC	6 cut(s)	548, 815, 920, 1231, 2400, 3064
AclWI	GGATC	4 cut(s)	2424, 2969, 3233, 3246
AcoI	YGGCCR	2 cut(s)	1800, 2748
AcsI	RAATTY	3 cut(s)	243, 1049, 2321
AcuI	CTGAAG	2 cut(s)	1461, 2900
AfiI	CCNNNNNNNGG	4 cut(s)	1809, 2059, 2914, 3299
AflII	CTTAAG	1 cut(s)	671
AhdI	GACNNNNNGTC	1 cut(s)	2881
AjnI	CCWGG	2 cut(s)	2057, 2913
Alw21I	GWGCWC	1 cut(s)	1485
Alw26I	GTCTC	3 cut(s)	353, 458, 1189
AlwI	GGATC	4 cut(s)	2424, 2969, 3233, 3246
AlwNI	CAGNNNCTG	1 cut(s)	2828
ApeKI	GCWGC	4 cut(s)	1745, 2828, 3285, 3288
ApoI	RAATTY	3 cut(s)	243, 1049, 2321
AseI	ATTAAT	1 cut(s)	1214
Asp700I	GAANNNNTTC	3 cut(s)	1262, 1892, 2382
AspLEI	GCGC	1 cut(s)	2305
AspS9I	GGNCC	3 cut(s)	292, 872, 2681
AsuC2I	CCSGG	2 cut(s)	2240, 3235
AsuHPI	GGTGA	7 cut(s)	515, 1093, 1179, 2455, 2500, 2663, 2828
AvaII	GGWCC	2 cut(s)	292, 2681
BamHI	GGATCC	1 cut(s)	3238
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	1485
Bbv12I	GWGCWC	1 cut(s)	1485
BbvI	GCAGC	4 cut(s)	1732, 2815, 3272, 3300
BciT130I	CCWGG	2 cut(s)	2059, 2915
BciVI	GTATCC	1 cut(s)	1156
BclI	TGATCA	2 cut(s)	2029, 3003
BcnI	CCSGG	2 cut(s)	2240, 3235
BcoDI	GTCTC	3 cut(s)	353, 458, 1189
BfaI	CTAG	4 cut(s)	339, 2354, 2717, 3069
BfmI	CTRYAG	3 cut(s)	37, 2622, 3286
BfrI	CTTAAG	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	1156
BisI	GCNGC	5 cut(s)	1746, 2400, 2829, 3286, 3289
BlsI	GCNGC	5 cut(s)	1747, 2401, 2830, 3287, 3290
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	4 cut(s)	2059, 2240, 2915, 3235
Bme18I	GGWCC	2 cut(s)	292, 2681
BmeRI	GACNNNNNGTC	1 cut(s)	2881
BmgT120I	GGNCC	3 cut(s)	292, 872, 2681
BmiI	GGNNCC	4 cut(s)	294, 519, 874, 3240
BmrFI	CCNGG	4 cut(s)	2059, 2240, 2915, 3235
BmrI	ACTGGG	1 cut(s)	710
BmuI	ACTGGG	1 cut(s)	710
BplI	GAGNNNNNCTC	2 cut(s)	1565, 1597
BpmI	CTGGAG	2 cut(s)	1488, 2572
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	2 cut(s)	2240, 3235
BsaAI	YACGTR	1 cut(s)	2676
BsaBI	GATNNNNATC	1 cut(s)	3243
BsaI	GGTCTC	1 cut(s)	1189
BsaJI	CCNNGG	4 cut(s)	939, 2057, 2058, 3234
Bsc4I	CCNNNNNNNGG	4 cut(s)	1809, 2059, 2914, 3299
Bse1I	ACTGG	3 cut(s)	705, 966, 2589
Bse3DI	GCAATG	1 cut(s)	2733
Bse8I	GATNNNNATC	1 cut(s)	3243
BseBI	CCWGG	2 cut(s)	2059, 2915
BseDI	CCNNGG	4 cut(s)	939, 2057, 2058, 3234
BseJI	GATNNNNATC	1 cut(s)	3243
BseLI	CCNNNNNNNGG	4 cut(s)	1809, 2059, 2914, 3299
BseMI	GCAATG	1 cut(s)	2733
BseMII	CTCAG	5 cut(s)	249, 321, 348, 1596, 2094
BseNI	ACTGG	3 cut(s)	705, 966, 2589
BseRI	GAGGAG	5 cut(s)	224, 227, 2546, 2966, 3163
BseXI	GCAGC	4 cut(s)	1732, 2815, 3272, 3300
Bsh1236I	CGCG	1 cut(s)	920
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	1485
BsiSI	CCGG	2 cut(s)	2239, 3234
BslI	CCNNNNNNNGG	4 cut(s)	1809, 2059, 2914, 3299
BsmAI	GTCTC	3 cut(s)	353, 458, 1189
BsmI	GAATGC	1 cut(s)	568
Bso31I	GGTCTC	1 cut(s)	1189
Bsp1286I	GDGCHC	1 cut(s)	1485
Bsp1407I	TGTACA	1 cut(s)	1428
BspACI	CCGC	6 cut(s)	548, 815, 920, 1231, 2400, 3064
BspCNI	CTCAG	5 cut(s)	250, 322, 349, 1595, 2095
BspFNI	CGCG	1 cut(s)	920
BspHI	TCATGA	1 cut(s)	1527
BspLI	GGNNCC	4 cut(s)	294, 519, 874, 3240
BspMAI	CTGCAG	1 cut(s)	3290
BspPI	GGATC	4 cut(s)	2424, 2969, 3233, 3246
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	517
BspTI	CTTAAG	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	1189
BsrDI	GCAATG	1 cut(s)	2733
BsrGI	TGTACA	1 cut(s)	1428
BsrI	ACTGG	3 cut(s)	705, 966, 2589
BssECI	CCNNGG	4 cut(s)	939, 2057, 2058, 3234
BssT1I	CCWWGG	1 cut(s)	939
Bst2UI	CCWGG	2 cut(s)	2059, 2915
Bst6I	CTCTTC	3 cut(s)	28, 528, 1437
BstAFI	CTTAAG	1 cut(s)	671
BstAPI	GCANNNNNTGC	1 cut(s)	2828
BstAUI	TGTACA	1 cut(s)	1428
BstBAI	YACGTR	1 cut(s)	2676
BstC8I	GCNNGC	4 cut(s)	737, 2555, 2833, 3144
BstDEI	CTNAG	6 cut(s)	258, 330, 357, 1582, 2103, 2267
BstENI	CCTNNNNNAGG	1 cut(s)	2912
BstFNI	CGCG	1 cut(s)	920
BstHHI	GCGC	1 cut(s)	2305
BstMAI	GTCTC	3 cut(s)	353, 458, 1189
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 524, 1350, 1364, 1418, 2300, 2408, 2828
BstNI	CCWGG	2 cut(s)	2059, 2915
BstNSI	RCATGY	4 cut(s)	34, 376, 1645, 2364
BstSCI	CCNGG	4 cut(s)	2057, 2238, 2913, 3233
BstSFI	CTRYAG	3 cut(s)	37, 2622, 3286
BstSNI	TACGTA	1 cut(s)	2676
BstUI	CGCG	1 cut(s)	920
BstV1I	GCAGC	4 cut(s)	1732, 2815, 3272, 3300
BstX2I	RGATCY	2 cut(s)	2416, 3238
BstXI	CCANNNNNNTGG	1 cut(s)	2899
BstYI	RGATCY	2 cut(s)	2416, 3238
BsuI	GTATCC	1 cut(s)	1156
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	7 cut(s)	49, 61, 66, 354, 698, 973, 1047
Cac8I	GCNNGC	4 cut(s)	737, 2555, 2833, 3144
CaiI	CAGNNNCTG	1 cut(s)	2828
CciI	TCATGA	1 cut(s)	1527
CfoI	GCGC	1 cut(s)	2305
Cfr13I	GGNCC	3 cut(s)	292, 872, 2681
DdeI	CTNAG	6 cut(s)	258, 330, 357, 1582, 2103, 2267
DriI	GACNNNNNGTC	1 cut(s)	2881
EaeI	YGGCCR	2 cut(s)	1800, 2748
Eam1104I	CTCTTC	3 cut(s)	28, 528, 1437
Eam1105I	GACNNNNNGTC	1 cut(s)	2881
EarI	CTCTTC	3 cut(s)	28, 528, 1437
Ecl136II	GAGCTC	1 cut(s)	1483
Eco105I	TACGTA	1 cut(s)	2676
Eco130I	CCWWGG	1 cut(s)	939
Eco147I	AGGCCT	4 cut(s)	769, 1367, 2143, 3180
Eco24I	GRGCYC	1 cut(s)	1485
Eco31I	GGTCTC	1 cut(s)	1189
Eco47I	GGWCC	2 cut(s)	292, 2681
Eco53kI	GAGCTC	1 cut(s)	1483
Eco57I	CTGAAG	2 cut(s)	1461, 2900
EcoICRI	GAGCTC	1 cut(s)	1483
EcoNI	CCTNNNNNAGG	1 cut(s)	2912
EcoRII	CCWGG	2 cut(s)	2057, 2913
EcoT14I	CCWWGG	1 cut(s)	939
EcoT22I	ATGCAT	4 cut(s)	797, 1423, 2733, 3253
EcoT38I	GRGCYC	1 cut(s)	1485
ErhI	CCWWGG	1 cut(s)	939
FalI	AAGNNNNNCTT	2 cut(s)	2278, 2310
FauI	CCCGC	3 cut(s)	541, 808, 913
FauNDI	CATATG	1 cut(s)	3253
FbaI	TGATCA	2 cut(s)	2029, 3003
FblI	GTMKAC	1 cut(s)	1450
Fnu4HI	GCNGC	5 cut(s)	1746, 2400, 2829, 3286, 3289
FriOI	GRGCYC	1 cut(s)	1485
Fsp4HI	GCNGC	5 cut(s)	1746, 2400, 2829, 3286, 3289
FspAI	RTGCGCAY	1 cut(s)	2304
FspBI	CTAG	4 cut(s)	339, 2354, 2717, 3069
FspI	TGCGCA	1 cut(s)	2304
GlaI	GCGC	1 cut(s)	2304
GluI	GCNGC	5 cut(s)	1746, 2400, 2829, 3286, 3289
GsuI	CTGGAG	2 cut(s)	1488, 2572
HapII	CCGG	2 cut(s)	2239, 3234
HhaI	GCGC	1 cut(s)	2305
Hin6I	GCGC	1 cut(s)	2303
HinP1I	GCGC	1 cut(s)	2303
HindIII	AAGCTT	2 cut(s)	1259, 2292
HinfI	GANTC	9 cut(s)	508, 667, 1192, 1346, 1508, 2246, 2257, 2981, 3075
HpaII	CCGG	2 cut(s)	2239, 3234
HphI	GGTGA	7 cut(s)	515, 1093, 1179, 2455, 2500, 2663, 2828
Hpy166II	GTNNAC	9 cut(s)	349, 926, 1223, 1451, 2046, 2280, 2941, 3198, 3262
Hpy8I	GTNNAC	9 cut(s)	349, 926, 1223, 1451, 2046, 2280, 2941, 3198, 3262
HpyAV	CCTTC	7 cut(s)	115, 647, 705, 1378, 1690, 2841, 2855
HpyCH4IV	ACGT	1 cut(s)	2675
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 524, 1350, 1364, 1418, 2300, 2408, 2828
HpyF3I	CTNAG	6 cut(s)	258, 330, 357, 1582, 2103, 2267
HpySE526I	ACGT	1 cut(s)	2675
HspAI	GCGC	1 cut(s)	2303
Ksp22I	TGATCA	2 cut(s)	2029, 3003
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	3 cut(s)	1087, 3085, 3139
Lsp1109I	GCAGC	4 cut(s)	1732, 2815, 3272, 3300
MaeI	CTAG	4 cut(s)	339, 2354, 2717, 3069
MaeII	ACGT	1 cut(s)	2675
MflI	RGATCY	2 cut(s)	2416, 3238
MhlI	GDGCHC	1 cut(s)	1485
MlyI	GAGTC	4 cut(s)	676, 1340, 2240, 2975
MmeI	TCCRAC	5 cut(s)	1140, 1224, 1739, 3109, 3241
Mph1103I	ATGCAT	4 cut(s)	797, 1423, 2733, 3253
MroXI	GAANNNNTTC	3 cut(s)	1262, 1892, 2382
MslI	CAYNNNNRTG	4 cut(s)	1529, 1784, 2897, 3252
MspA1I	CMGCKG	1 cut(s)	2402
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	2 cut(s)	2239, 3234
MspR9I	CCNGG	4 cut(s)	2059, 2240, 2915, 3235
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	2059, 2915
MvnI	CGCG	1 cut(s)	920
MwoI	GCNNNNNNNGC	8 cut(s)	27, 524, 1350, 1364, 1418, 2300, 2408, 2828
NciI	CCSGG	2 cut(s)	2240, 3235
NdeI	CATATG	1 cut(s)	3253
NlaIV	GGNNCC	4 cut(s)	294, 519, 874, 3240
NmeAIII	GCCGAG	2 cut(s)	662, 690
NmuCI	GTSAC	3 cut(s)	883, 1019, 1723
NsbI	TGCGCA	1 cut(s)	2304
NsiI	ATGCAT	4 cut(s)	797, 1423, 2733, 3253
NspI	RCATGY	4 cut(s)	34, 376, 1645, 2364
PagI	TCATGA	1 cut(s)	1527
PasI	CCCWGGG	1 cut(s)	2058
PceI	AGGCCT	4 cut(s)	769, 1367, 2143, 3180
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	2748
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	3 cut(s)	1262, 1892, 2382
PfeI	GAWTC	5 cut(s)	508, 1192, 1508, 2257, 3075
PkrI	GCNGC	5 cut(s)	1747, 2401, 2830, 3287, 3290
PleI	GAGTC	4 cut(s)	675, 1340, 2240, 2975
PpsI	GAGTC	4 cut(s)	675, 1340, 2240, 2975
Ppu21I	YACGTR	1 cut(s)	2676
PshBI	ATTAAT	1 cut(s)	1214
PsiI	TTATAA	1 cut(s)	2795
Psp124BI	GAGCTC	1 cut(s)	1485
Psp6I	CCWGG	2 cut(s)	2057, 2913
PspGI	CCWGG	2 cut(s)	2057, 2913
PspN4I	GGNNCC	4 cut(s)	294, 519, 874, 3240
PspPI	GGNCC	3 cut(s)	292, 872, 2681
PstI	CTGCAG	1 cut(s)	3290
PstNI	CAGNNNCTG	1 cut(s)	2828
PsuI	RGATCY	2 cut(s)	2416, 3238
RseI	CAYNNNNRTG	4 cut(s)	1529, 1784, 2897, 3252
SacI	GAGCTC	1 cut(s)	1485
SapI	GCTCTTC	1 cut(s)	28
SatI	GCNGC	5 cut(s)	1746, 2400, 2829, 3286, 3289
Sau96I	GGNCC	3 cut(s)	292, 872, 2681
ScaI	AGTACT	1 cut(s)	804
SchI	GAGTC	4 cut(s)	676, 1340, 2240, 2975
ScrFI	CCNGG	4 cut(s)	2059, 2240, 2915, 3235
SduI	GDGCHC	1 cut(s)	1485
SfcI	CTRYAG	3 cut(s)	37, 2622, 3286
SinI	GGWCC	2 cut(s)	292, 2681
SmiMI	CAYNNNNRTG	4 cut(s)	1529, 1784, 2897, 3252
SmlI	CTYRAG	2 cut(s)	385, 671
SmoI	CTYRAG	2 cut(s)	385, 671
SnaBI	TACGTA	1 cut(s)	2676
SseBI	AGGCCT	4 cut(s)	769, 1367, 2143, 3180
SsiI	CCGC	6 cut(s)	548, 815, 920, 1231, 2400, 3064
SspI	AATATT	3 cut(s)	1405, 1490, 2788
SspMI	CTAG	4 cut(s)	339, 2354, 2717, 3069
SstI	GAGCTC	1 cut(s)	1485
StuI	AGGCCT	4 cut(s)	769, 1367, 2143, 3180
StyD4I	CCNGG	4 cut(s)	2057, 2238, 2913, 3233
StyI	CCWWGG	1 cut(s)	939
TaiI	ACGT	1 cut(s)	2678
TaqI	TCGA	6 cut(s)	103, 146, 511, 1371, 1572, 2973
TaqII	GACCGA	1 cut(s)	1674
TatI	WGTACW	3 cut(s)	802, 1428, 2251
TauI	GCSGC	1 cut(s)	2402
TfiI	GAWTC	5 cut(s)	508, 1192, 1508, 2257, 3075
TscAI	CASTG	7 cut(s)	49, 61, 73, 361, 705, 973, 1047
TseFI	GTSAC	3 cut(s)	883, 1019, 1723
TseI	GCWGC	4 cut(s)	1745, 2828, 3285, 3288
Tsp45I	GTSAC	3 cut(s)	883, 1019, 1723
TspGWI	ACGGA	2 cut(s)	2974, 3040
TspRI	CASTG	7 cut(s)	49, 61, 73, 361, 705, 973, 1047
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	2 cut(s)	292, 2681
VspI	ATTAAT	1 cut(s)	1214
XagI	CCTNNNNNAGG	1 cut(s)	2912
XapI	RAATTY	3 cut(s)	243, 1049, 2321
XceI	RCATGY	4 cut(s)	34, 376, 1645, 2364
XmiI	GTMKAC	1 cut(s)	1450
XmnI	GAANNNNTTC	3 cut(s)	1262, 1892, 2382
XspI	CTAG	4 cut(s)	339, 2354, 2717, 3069
ZrmI	AGTACT	1 cut(s)	804
Zsp2I	ATGCAT	4 cut(s)	797, 1423, 2733, 3253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.