Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Reverse (-)

59687423 .. 59690383

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGCTTCAACTCTTGGGTGTTCATAGGAGGGTGGATGATATGGCTTTTGTGTTTGATTTGATGCAAAAGCATATCGTTAACAGGAGTGTAGACACTTACCTCATTATATTTAAGGGTCTTAATATAAGAGGTGGGATTCGAGCAGCCCCGTATGCTCTTGGAAGGTTGCGCAAAAATGGGTTTATCTTGAATGCATATTCATACAATGGCTTGATCTATATGCTTATCCAGTCTGGCTATTGTAGGGAGGCTCTGGAGGTATACCAAAGGGTGGTGTCAGAAGGACTTAAGCCGAGCCTCAAGACTTACTCAGCACTTATGGTGGCATTGGGAAAGAGAAGGGATGTTCAAACTGTTATGGGCTTACTAAAAGAGATGGAAACTTTGGGGCTCAGGCCTAATGTTTATACTTTCACTATATGCATTAGAGTACTCGGGAGGGCGGGGAAAATTGACGAGGCATATGAAATTTTCAAGAGAATGGATGACGAGGGATGTGGCCCCGACGTTATCACTTATACTGTTCTCATTGATGCTCTTTGTAATGCAGGTAAACTTGATAATGCCAAGAAGTTGTTTGCAAATATGAAAGCAAGTGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGTGATAGTAAAGACTTGGACGCAGTAAAAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTTACTTTCACTATACTGGTTGATTCTTTATGCAAAGCTGGAAATGTAGATGAGGCATTCAATATGTTGGATATCATGAGGAAAGAAGGGGTCTCACCAAATCTTCAGACCTACAACACGTTAATTTGTGGACTTCTGCGGTTATGTAGGTTGGATGAGGCATTGGAACTCTTCAACAGTATGGATTCTCTTGGTGTTGCACCTACTGCTTACACATACATCCTTTTCATTGACTATTATGGAAAGTCTGGTGACTCGGGAAAAGCTATTGAGGCATTTGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCTTTGTATGGTCTTGCTGAGGAGGGCAGACTTCAAGATGCAAAACATATTTATGATGAGCTTATATACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAAGGTGGGGCAAATAGATGAAGCCATCAAGTTACTCTCAGAGATGGAAAGAAATGGGTGTGAGGCTGATGTCATCATAGTTAATTCGTTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCAGAAAAGCTATTGAAATGTTTGAGAATATGACTGAACAAGGGTGTCCTCCAAATGCAATAACTTTCAACACACTCCTGAATGGCCTTTGCAAGAATGATGAGGTCAATTTGGCCTTGAAAATGCTTTGCAAAATGACCGTGATGAATTGCTGTCCTGATGTTTTGACCTATAACACTATAATTTATGGCTTAATCAGAGAAAACAGAATTGATTATGCATTCTGGTTCTTCCATCAGATGAAGAAACGCCTATTTCCTGATCATATAACATTGTGCACCCTCCTTCCGGGTGTAGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTGCTGAGGACTTCGCATATCAGGTTGGAGTTCAAGCAGACAGGCCTTTTTGGGAAGATTTGATTGGAGGGGTTGTGATTCAAGCTGAAGTAGACCGAGCCATTTTATTTGCTGAAAGGTTGATTTCTGAGAGGATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTAGGAAAACTCTTGATGCTCAGAATTTGTTTGCAAAGTTTACTGGAACTCTTGGAGTTAAGCCAACTCTAGAAGCATATAACTGTTTGATTGAATGGCTTCTTAAAGACCATTTCACTGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCCCCTGATGTATTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGACGAGATGATTTGCAGGGGATACAAGCCTAACACCATAACACACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAGATCTATATTATGATCTTGTAAGTGGTGATTTTTCTCCTTCTCCTTGTACATACGGCCCTCTCATAGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGTTGTAAGCCTAATTGTGCAATCTTCAATATTCTTATAAATGGTTTTTCGAAAACAGGTGATGTGGAAACTGCTTGCAAGTTGTTTAAAAGGATGATTAAAGAAGGAATAAGACCAGACCTGAAGTCGTACACCATTCTCGTGGATTGCTACTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTAAGACGAAGTGGCCTTGATCCTGATTCAGTTTCCTACAACCTTATGATTAATGGACTTGGAAGATCACGGAGGATGGAGGAAGCTCTCGCTCTTTATGATGAAATGCGGACTAGAAGAATTACTCCCGATATTTTCACCTACAATTCATTAATACTCAACCTTGGACTTGTTGGAATGGTGGAGCAAGCAGGAAGGATTTATAAAGAGCTACAACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTTATTCGGTTGCATAGCACTTCTGGAAATCCAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGTAGGAACATATGCACAGCTTCCCAATCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

986

Amino Acids

111.32

Weight (kDa)

5.41

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	51 - 161	3.7e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	57 - 113	9.6e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	59 - 157	1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	102 - 145	5.9e-08	PPR repeat family
PPR_3	PF13812	122 - 180	2.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	130 - 161	2.3e-07	PPR repeat
PPR	PF01535	136 - 166	2.1e-06	PPR repeat
PPR_2	PF13041	142 - 182	2.2e-11	PPR repeat family
PPR_1	PF12854	165 - 197	1.3e-11	PPR repeat
PPR_3	PF13812	168 - 215	7.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	168 - 215	3.3e-15	PPR repeat family
PPR	PF01535	171 - 200	1.8e-06	PPR repeat
PPR_3	PF13812	191 - 246	2.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	206 - 252	9.5e-11	PPR repeat family
PPR_long	PF17177	220 - 320	8.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	229 - 282	5.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	235 - 267	1.4e-13	PPR repeat
PPR_2	PF13041	238 - 286	1.9e-16	PPR repeat family
PPR	PF01535	241 - 271	4.4e-07	PPR repeat
PPR_1	PF12854	270 - 301	2.7e-07	PPR repeat
PPR_2	PF13041	277 - 317	1.1e-10	PPR repeat family
PPR	PF01535	277 - 306	4.5e-06	PPR repeat
PPR_3	PF13812	333 - 391	8.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	343 - 389	1.8e-09	PPR repeat family
PPR_1	PF12854	375 - 407	1.1e-09	PPR repeat
TPR_24	PF23276	378 - 475	5.7e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	378 - 415	6.8e-12	PPR repeat family
PPR	PF01535	381 - 411	2.6e-09	PPR repeat
PPR_long	PF17177	397 - 492	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	401 - 462	2.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	409 - 442	1.4e-06	PPR repeat
PPR_2	PF13041	414 - 460	3.3e-12	PPR repeat family
PPR_1	PF12854	446 - 477	1.1e-08	PPR repeat
PPR_2	PF13041	448 - 497	1.4e-19	PPR repeat family
PPR	PF01535	451 - 481	1.5e-07	PPR repeat
PPR_3	PF13812	472 - 527	1.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	480 - 512	5.2e-11	PPR repeat
PPR_2	PF13041	483 - 531	6.1e-14	PPR repeat family
PPR_1	PF12854	514 - 547	1.8e-08	PPR repeat
PPR_2	PF13041	518 - 565	5.1e-09	PPR repeat family
PPR_2	PF13041	661 - 706	8.2e-14	PPR repeat family
PPR_3	PF13812	683 - 742	3.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	691 - 722	4.7e-06	PPR repeat
PPR_2	PF13041	694 - 743	7.9e-14	PPR repeat family
PPR_2	PF13041	729 - 776	9.5e-06	PPR repeat family
PPR_3	PF13812	756 - 811	2.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	762 - 792	1.3e-07	PPR repeat
PPR_2	PF13041	764 - 800	4.8e-08	PPR repeat family
PPR	PF01535	768 - 797	4.7e-06	PPR repeat
PPR_long	PF17177	783 - 873	3.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	796 - 827	4.2e-09	PPR repeat
PPR_2	PF13041	802 - 848	3.1e-14	PPR repeat family
PPR	PF01535	803 - 832	1.2e-07	PPR repeat
TPR_24	PF23276	813 - 931	2.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	822 - 882	3.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	831 - 861	1.5e-08	PPR repeat
PPR	PF01535	838 - 867	5e-07	PPR repeat
PPR_2	PF13041	838 - 882	4.4e-12	PPR repeat family
PPR_3	PF13812	859 - 913	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	866 - 898	1.9e-08	PPR repeat
PPR_2	PF13041	869 - 913	2.3e-15	PPR repeat family
PPR	PF01535	872 - 901	2.9e-08	PPR repeat
PPR_long	PF17177	877 - 980	5.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	906 - 949	6.7e-08	PPR repeat family
PPR_3	PF13812	927 - 980	1.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	939 - 980	3.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1149, 2423, 2787
Acc16I	TGCGCA	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	4 cut(s)	90, 261, 1818, 2889
AccIII	TCCGGA	1 cut(s)	1132
AciI	CCGC	4 cut(s)	443, 859, 2692, 2910
AclWI	GGATC	2 cut(s)	2052, 2597
AcoI	YGGCCR	1 cut(s)	1285
AcsI	RAATTY	3 cut(s)	468, 677, 1936
AcuI	CTGAAG	3 cut(s)	809, 1833, 2528
AfaI	GTAC	4 cut(s)	432, 1909, 2302, 2516
AfiI	CCNNNNNNNGG	4 cut(s)	271, 1684, 2245, 2927
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	2 cut(s)	837, 1910
AhdI	GACNNNNNGTC	1 cut(s)	2509
AjnI	CCWGG	1 cut(s)	2541
AjuI	GAANNNNNNNTTGG	2 cut(s)	1773, 1805
Alw21I	GWGCWC	1 cut(s)	1676
Alw26I	GTCTC	1 cut(s)	817
Alw44I	GTGCAC	1 cut(s)	1672
AlwI	GGATC	2 cut(s)	2052, 2597
Ama87I	CYCGRG	3 cut(s)	434, 976, 1014
Aor13HI	TCCGGA	1 cut(s)	1132
AoxI	GGCC	8 cut(s)	395, 499, 1285, 1480, 1509, 1769, 2308, 2596
ApaLI	GTGCAC	1 cut(s)	1672
ApeKI	GCWGC	4 cut(s)	143, 631, 1373, 2913
ApoI	RAATTY	3 cut(s)	468, 677, 1936
AseI	ATTAAT	2 cut(s)	2634, 2735
Asp700I	GAANNNNTTC	1 cut(s)	2010
AspLEI	GCGC	2 cut(s)	171, 1707
AspS9I	GGNCC	2 cut(s)	500, 2309
AsuC2I	CCSGG	1 cut(s)	1686
AsuHPI	GGTGA	6 cut(s)	807, 983, 2083, 2291, 2456, 2713
AsuII	TTCGAA	1 cut(s)	2435
AvaI	CYCGRG	3 cut(s)	434, 976, 1014
BaeGI	GKGCMC	2 cut(s)	1676, 2080
BanII	GRGCYC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	2525
BbsI	GAAGAC	1 cut(s)	2347
Bbv12I	GWGCWC	1 cut(s)	1676
BbvCI	CCTCAGC	2 cut(s)	1068, 1731
BbvI	GCAGC	4 cut(s)	155, 618, 1360, 2900
BceAI	ACGGC	1 cut(s)	2323
BciT130I	CCWGG	1 cut(s)	2543
BciVI	GTATCC	1 cut(s)	2171
BclI	TGATCA	1 cut(s)	1657
BcnI	CCSGG	1 cut(s)	1686
BcoDI	GTCTC	1 cut(s)	817
BfaI	CTAG	5 cut(s)	1868, 1982, 2240, 2345, 2697
BfmI	CTRYAG	3 cut(s)	1168, 2250, 2914
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	2171
BglII	AGATCT	1 cut(s)	2254
BisI	GCNGC	5 cut(s)	144, 632, 1374, 2911, 2914
BlsI	GCNGC	5 cut(s)	145, 633, 1375, 2912, 2915
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	1686, 2543
BmeRI	GACNNNNNGTC	1 cut(s)	2509
BmeT110I	CYCGRG	3 cut(s)	434, 976, 1014
BmgT120I	GGNCC	2 cut(s)	500, 2309
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	2 cut(s)	1686, 2543
BmsI	GCATC	8 cut(s)	51, 523, 1078, 1705, 1918, 2101, 2551, 2866
BpiI	GAAGAC	1 cut(s)	2347
BpmI	CTGGAG	3 cut(s)	275, 703, 2200
Bpu10I	CCTNAGC	3 cut(s)	392, 1068, 1731
Bpu14I	TTCGAA	1 cut(s)	2435
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	1686
BsaAI	YACGTR	1 cut(s)	1913
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	1 cut(s)	2746
BsaWI	WCCGGW	1 cut(s)	1132
BsaXI	ACNNNNNCTCC	2 cut(s)	1785, 1815
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 1684, 2245, 2927
Bse1I	ACTGG	6 cut(s)	229, 741, 1374, 1960, 2217, 2809
Bse3DI	GCAATG	1 cut(s)	2361
BseAI	TCCGGA	1 cut(s)	1132
BseBI	CCWGG	1 cut(s)	2543
BseDI	CCNNGG	1 cut(s)	2746
BseLI	CCNNNNNNNGG	4 cut(s)	271, 1684, 2245, 2927
BseMI	GCAATG	1 cut(s)	2361
BseMII	CTCAG	7 cut(s)	324, 406, 1059, 1224, 1722, 1845, 1946
BseNI	ACTGG	6 cut(s)	229, 741, 1374, 1960, 2217, 2809
BseRI	GAGGAG	3 cut(s)	1085, 2384, 2594
BseSI	GKGCMC	2 cut(s)	1676, 2080
BseXI	GCAGC	4 cut(s)	155, 618, 1360, 2900
BshFI	GGCC	8 cut(s)	397, 501, 1287, 1482, 1511, 1771, 2310, 2598
BsiHKAI	GWGCWC	1 cut(s)	1676
BsiHKCI	CYCGRG	3 cut(s)	434, 976, 1014
BsiSI	CCGG	2 cut(s)	1133, 1685
BslFI	GGGAC	1 cut(s)	2904
BslI	CCNNNNNNNGG	4 cut(s)	271, 1684, 2245, 2927
BsmAI	GTCTC	1 cut(s)	817
BsmFI	GGGAC	1 cut(s)	2904
BsmI	GAATGC	3 cut(s)	196, 776, 1616
BsnI	GGCC	8 cut(s)	397, 501, 1287, 1482, 1511, 1771, 2310, 2598
Bso31I	GGTCTC	1 cut(s)	817
BsoBI	CYCGRG	3 cut(s)	434, 976, 1014
Bsp119I	TTCGAA	1 cut(s)	2435
Bsp1286I	GDGCHC	3 cut(s)	393, 1676, 2080
Bsp13I	TCCGGA	1 cut(s)	1132
Bsp1407I	TGTACA	2 cut(s)	1907, 2300
Bsp143I	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
BspACI	CCGC	4 cut(s)	443, 859, 2692, 2910
BspANI	GGCC	8 cut(s)	397, 501, 1287, 1482, 1511, 1771, 2310, 2598
BspCNI	CTCAG	7 cut(s)	323, 405, 1060, 1223, 1723, 1846, 1945
BspEI	TCCGGA	1 cut(s)	1132
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	2918
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	2 cut(s)	2052, 2597
BspT104I	TTCGAA	1 cut(s)	2435
BspTI	CTTAAG	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	817
BsrDI	GCAATG	1 cut(s)	2361
BsrGI	TGTACA	2 cut(s)	1907, 2300
BsrI	ACTGG	6 cut(s)	229, 741, 1374, 1960, 2217, 2809
BssECI	CCNNGG	1 cut(s)	2746
BssMI	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
BssNAI	GTATAC	1 cut(s)	262
BssSI	CACGAG	1 cut(s)	2525
BssT1I	CCWWGG	1 cut(s)	2746
Bst1107I	GTATAC	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	2525
Bst2UI	CCWGG	1 cut(s)	2543
Bst4CI	ACNGT	7 cut(s)	355, 523, 899, 1121, 1348, 1537, 1997
Bst6I	CTCTTC	2 cut(s)	896, 2545
BstAFI	CTTAAG	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstAUI	TGTACA	2 cut(s)	1907, 2300
BstBAI	YACGTR	1 cut(s)	1913
BstBI	TTCGAA	1 cut(s)	2435
BstC8I	GCNNGC	4 cut(s)	1285, 2071, 2461, 2772
BstDEI	CTNAG	7 cut(s)	310, 392, 1068, 1210, 1731, 1854, 1932
BstHHI	GCGC	2 cut(s)	171, 1707
BstKTI	GATC	7 cut(s)	216, 1660, 2047, 2257, 2269, 2605, 2651
BstMAI	GTCTC	1 cut(s)	817
BstMBI	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 926, 992, 1046, 2075
BstNI	CCWGG	1 cut(s)	2543
BstNSI	RCATGY	1 cut(s)	1273
BstSCI	CCNGG	2 cut(s)	1684, 2541
BstSFI	CTRYAG	3 cut(s)	1168, 2250, 2914
BstSLI	GKGCMC	2 cut(s)	1676, 2080
BstV1I	GCAGC	4 cut(s)	155, 618, 1360, 2900
BstV2I	GAAGAC	1 cut(s)	2347
BstX2I	RGATCY	2 cut(s)	2044, 2254
BstXI	CCANNNNNNTGG	1 cut(s)	2527
BstYI	RGATCY	2 cut(s)	2044, 2254
BstZ17I	GTATAC	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	2171
BsuRI	GGCC	8 cut(s)	397, 501, 1287, 1482, 1511, 1771, 2310, 2598
BtsIMutI	CAGTG	3 cut(s)	1126, 2028, 2136
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	4 cut(s)	1285, 2071, 2461, 2772
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	2 cut(s)	171, 1707
Cfr13I	GGNCC	2 cut(s)	500, 2309
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	4 cut(s)	431, 1908, 2301, 2515
CviAII	CATG	6 cut(s)	796, 1153, 1270, 1302, 2117, 2899
CviQI	GTAC	4 cut(s)	431, 1908, 2301, 2515
DdeI	CTNAG	7 cut(s)	310, 392, 1068, 1210, 1731, 1854, 1932
DpnI	GATC	7 cut(s)	215, 1659, 2046, 2256, 2268, 2604, 2650
DpnII	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
DraI	TTTAAA	1 cut(s)	2473
DriI	GACNNNNNGTC	1 cut(s)	2509
EaeI	YGGCCR	1 cut(s)	1285
Eam1104I	CTCTTC	2 cut(s)	896, 2545
Eam1105I	GACNNNNNGTC	1 cut(s)	2509
EarI	CTCTTC	2 cut(s)	896, 2545
Eco130I	CCWWGG	1 cut(s)	2746
Eco147I	AGGCCT	2 cut(s)	397, 1771
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	817
Eco32I	GATATC	1 cut(s)	793
Eco57I	CTGAAG	3 cut(s)	809, 1833, 2528
Eco88I	CYCGRG	3 cut(s)	434, 976, 1014
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	2541
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	2746
EcoT22I	ATGCAT	4 cut(s)	196, 425, 1618, 2361
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	2746
FaeI	CATG	6 cut(s)	799, 1156, 1273, 1305, 2120, 2902
FaqI	GGGAC	1 cut(s)	2904
FatI	CATG	6 cut(s)	795, 1152, 1269, 1301, 2116, 2898
FauI	CCCGC	1 cut(s)	436
FauNDI	CATATG	2 cut(s)	463, 2935
FbaI	TGATCA	1 cut(s)	1657
FblI	GTMKAC	4 cut(s)	90, 261, 1818, 2889
Fnu4HI	GCNGC	5 cut(s)	144, 632, 1374, 2911, 2914
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	5 cut(s)	144, 632, 1374, 2911, 2914
FspBI	CTAG	5 cut(s)	1868, 1982, 2240, 2345, 2697
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	2 cut(s)	170, 1706
GluI	GCNGC	5 cut(s)	144, 632, 1374, 2911, 2914
GsuI	CTGGAG	3 cut(s)	275, 703, 2200
HaeIII	GGCC	8 cut(s)	397, 501, 1287, 1482, 1511, 1771, 2310, 2598
HapII	CCGG	2 cut(s)	1133, 1685
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	171, 1707
Hin1II	CATG	6 cut(s)	799, 1156, 1273, 1305, 2120, 2902
Hin6I	GCGC	2 cut(s)	169, 1705
HinP1I	GCGC	2 cut(s)	169, 1705
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	2037
HinfI	GANTC	8 cut(s)	136, 743, 905, 974, 1136, 1804, 1874, 2609
HpaI	GTTAAC	1 cut(s)	79
HpaII	CCGG	2 cut(s)	1133, 1685
HphI	GGTGA	6 cut(s)	807, 983, 2083, 2291, 2456, 2713
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	9 cut(s)	156, 275, 333, 800, 1318, 1691, 2301, 2483, 2772
HpyCH4III	ACNGT	7 cut(s)	355, 523, 899, 1121, 1348, 1537, 1997
HpyCH4IV	ACGT	3 cut(s)	507, 839, 1912
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 926, 992, 1046, 2075
HpyF3I	CTNAG	7 cut(s)	310, 392, 1068, 1210, 1731, 1854, 1932
HpySE526I	ACGT	3 cut(s)	507, 839, 1912
Hsp92II	CATG	6 cut(s)	799, 1156, 1273, 1305, 2120, 2902
HspAI	GCGC	2 cut(s)	169, 1705
Kpn2I	TCCGGA	1 cut(s)	1132
Ksp22I	TGATCA	1 cut(s)	1657
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
LmnI	GCTCC	2 cut(s)	715, 2767
Lsp1109I	GCAGC	4 cut(s)	155, 618, 1360, 2900
LweI	GCATC	8 cut(s)	51, 523, 1078, 1705, 1918, 2101, 2551, 2866
MaeI	CTAG	5 cut(s)	1868, 1982, 2240, 2345, 2697
MaeII	ACGT	3 cut(s)	507, 839, 1912
MaeIII	GTNAC	7 cut(s)	616, 721, 971, 1141, 1203, 1351, 2103
MalI	GATC	7 cut(s)	215, 1659, 2046, 2256, 2268, 2604, 2650
MboI	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
MflI	RGATCY	2 cut(s)	2044, 2254
MhlI	GDGCHC	3 cut(s)	393, 1676, 2080
MlyI	GAGTC	1 cut(s)	968
MmeI	TCCRAC	5 cut(s)	768, 852, 1367, 1732, 2737
Mph1103I	ATGCAT	4 cut(s)	196, 425, 1618, 2361
MroI	TCCGGA	1 cut(s)	1132
MroXI	GAANNNNTTC	1 cut(s)	2010
MslI	CAYNNNNRTG	3 cut(s)	1101, 1157, 2525
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	2 cut(s)	1133, 1685
MspR9I	CCNGG	2 cut(s)	1686, 2543
Mva1269I	GAATGC	3 cut(s)	196, 776, 1616
MvaI	CCWGG	1 cut(s)	2543
MwoI	GCNNNNNNNGC	5 cut(s)	152, 926, 992, 1046, 2075
NciI	CCSGG	1 cut(s)	1686
NdeI	CATATG	2 cut(s)	463, 2935
NdeII	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
NlaIII	CATG	6 cut(s)	799, 1156, 1273, 1305, 2120, 2902
NlaIV	GGNNCC	1 cut(s)	502
NmeAIII	GCCGAG	2 cut(s)	318, 1313
NmuCI	GTSAC	2 cut(s)	971, 1351
NsbI	TGCGCA	1 cut(s)	170
NsiI	ATGCAT	4 cut(s)	196, 425, 1618, 2361
NspI	RCATGY	1 cut(s)	1273
NspV	TTCGAA	1 cut(s)	2435
PaeR7I	CTCGAG	1 cut(s)	1014
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	2 cut(s)	397, 1771
PctI	GAATGC	3 cut(s)	196, 776, 1616
PdmI	GAANNNNTTC	1 cut(s)	2010
PfeI	GAWTC	7 cut(s)	136, 743, 905, 1136, 1804, 1874, 2609
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	145, 633, 1375, 2912, 2915
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
Ppu21I	YACGTR	1 cut(s)	1913
PshBI	ATTAAT	2 cut(s)	2634, 2735
PsiI	TTATAA	3 cut(s)	1149, 2423, 2787
Psp6I	CCWGG	1 cut(s)	2541
PspGI	CCWGG	1 cut(s)	2541
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	500, 2309
PspXI	VCTCGAGB	1 cut(s)	1014
PstI	CTGCAG	1 cut(s)	2918
PsuI	RGATCY	2 cut(s)	2044, 2254
RsaI	GTAC	4 cut(s)	432, 1909, 2302, 2516
RsaNI	GTAC	4 cut(s)	431, 1908, 2301, 2515
RseI	CAYNNNNRTG	3 cut(s)	1101, 1157, 2525
SatI	GCNGC	5 cut(s)	144, 632, 1374, 2911, 2914
Sau3AI	GATC	7 cut(s)	213, 1657, 2044, 2254, 2266, 2602, 2648
Sau96I	GGNCC	2 cut(s)	500, 2309
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	2 cut(s)	1686, 2543
SduI	GDGCHC	3 cut(s)	393, 1676, 2080
SfaNI	GCATC	8 cut(s)	51, 523, 1078, 1705, 1918, 2101, 2551, 2866
SfcI	CTRYAG	3 cut(s)	1168, 2250, 2914
Sfr274I	CTCGAG	1 cut(s)	1014
SfuI	TTCGAA	1 cut(s)	2435
SlaI	CTCGAG	1 cut(s)	1014
SmiMI	CAYNNNNRTG	3 cut(s)	1101, 1157, 2525
SmlI	CTYRAG	3 cut(s)	287, 299, 1014
SmoI	CTYRAG	3 cut(s)	287, 299, 1014
SseBI	AGGCCT	2 cut(s)	397, 1771
SsiI	CCGC	4 cut(s)	443, 859, 2692, 2910
SspI	AATATT	2 cut(s)	1033, 2416
SspMI	CTAG	5 cut(s)	1868, 1982, 2240, 2345, 2697
StuI	AGGCCT	2 cut(s)	397, 1771
StyD4I	CCNGG	2 cut(s)	1684, 2541
StyI	CCWWGG	1 cut(s)	2746
TaaI	ACNGT	7 cut(s)	355, 523, 899, 1121, 1348, 1537, 1997
TaiI	ACGT	3 cut(s)	510, 842, 1915
TaqI	TCGA	4 cut(s)	139, 1015, 1897, 2435
TaqII	GACCGA	1 cut(s)	1836
TatI	WGTACW	3 cut(s)	430, 1907, 2300
TauI	GCSGC	1 cut(s)	2913
TfiI	GAWTC	7 cut(s)	136, 743, 905, 1136, 1804, 1874, 2609
TscAI	CASTG	3 cut(s)	1126, 2035, 2143
TseFI	GTSAC	2 cut(s)	971, 1351
TseI	GCWGC	4 cut(s)	143, 631, 1373, 2913
Tsp45I	GTSAC	2 cut(s)	971, 1351
TspGWI	ACGGA	1 cut(s)	2668
TspRI	CASTG	3 cut(s)	1126, 2035, 2143
Van91I	CCANNNNNTGG	1 cut(s)	271
Vha464I	CTTAAG	1 cut(s)	287
VneI	GTGCAC	1 cut(s)	1672
VspI	ATTAAT	2 cut(s)	2634, 2735
XapI	RAATTY	3 cut(s)	468, 677, 1936
XbaI	TCTAGA	1 cut(s)	1981
XceI	RCATGY	1 cut(s)	1273
XhoI	CTCGAG	1 cut(s)	1014
XmiI	GTMKAC	4 cut(s)	90, 261, 1818, 2889
XmnI	GAANNNNTTC	1 cut(s)	2010
XspI	CTAG	5 cut(s)	1868, 1982, 2240, 2345, 2697
ZrmI	AGTACT	1 cut(s)	432
Zsp2I	ATGCAT	4 cut(s)	196, 425, 1618, 2361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.