Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Reverse (-)

59496125 .. 59500188

Gene Structure 4064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G034930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3369 bp

ATGGCATTATTGATACTCTGCTCTTCAACTATGTGCTGCTGTACTAGTCTTGCTTATACTGACACCACCACTAGTAGTAGTAGTAGGATATTTGCTATAAGCACCCACAGTCCTCCTCCTGTTCTACATCCACCAAAATCAAAGGTTTGGCCTTGTGGTTCGCTGCTCAACTTGACCAGCAAGAGGAACAAAAGGTTGGGTTTCTGTGGCTTTGTGATCAAAAGGCCGCAGCAGCAGCAGCAGGAGGTGGTGGTGGTGGTGAAGAAGAACAAGCCCAAAACTTCAGTGTCTTCTGAGGAAGTTGTGACGGTTCTAAAGTCCATTTCAGACCCGACTTCTGCCTTTTCATTCTTTAAGTCCATTGCCGAGTTGCCTAGTGTGATTCACACCACTGAAACTTGCAATTACATGCTTCAACTCTTGGGTGTTCATAGGAGGGTGGATGATATGGCTTTTGTGTTTGATTTGATGCAAAAGCATATCGTTAACAGGAGTGTAGACACTTACCTCATTATATTTAAGGGTCTTAATATAAGAGGTGGGATTCGAGCAGCCCCGTATGCTCTTGGAAGGTTGCGCAAAAATGGGTTTATCTTGAATGCATATTCATACAATGGCTTGATCTATATGCTTATCCAGTCTGGCTATTGTAGGGAGGCTCTGGAGGTATACCAAAGGGTGGTGTCAGAAGGACTTAAGCCGAGCCTCAAGACTTACTCAGCACTTATGGTGGCATTGGGAAAGAGAAGGGATGTTCAAACTGTTATGGGCTTACTAAAAGAGATGGAAACTTTGGGGCTCAGGCCTAATGTTTATACTTTCACTATATGCATTAGAGTACTCGGGAGGGCGGGGAAAATTGATGAGGCATATGAAATTTTCAAGAGAATGGATGATGAGGGATGTGGCCCCGACGTTATCACTTATACTGTTCTCATTGATGCTCTTTGTAATGCAGGTAAACTTGATAATGCCAAGAAGTTGTTTGCAAATATGAAAGCAAGTGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGTGATTGTAAAGACTTGGACACAGTAAAAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTTACTTTCACTATACTGGTTGATTCTTTATGCAAAGCTGGAAATGTAGATGAGGCATTCAATATGTTGGATATCATGAGGAAAGAAGGGGTCTCACCAAATCTTCAGACCTACAACACGTTAATTTGTGGACTTCTGCGGTTATGTAGGTTGCATGAGGCATTGGAACTCTTCAACAGTATGGATTCTCTTGGTGTTGCACCTACTGCTTACACATACATCCTTTTCATCGACTATTATGGAAAGTCTGGTGACTCGGGAAAAGCTATTGAGGCATTTGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCTTTGTATGGTCTTGCTGAGGAGGGCAGACTTCAAGATGCAAAACATATTTATGATGAGCTTATATACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAAGGTGGGGCAAATAGATGAAGCCATCAAGTTACTCTCAGAGATGGAAAGAAATGGGTGTGAGGCTGATGTCATCATAGTTAATTCGTTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCAGAAAAGCTATTGAAATGTTTGAGAATATGACTGAACAAGGTTGTCCTCCAAATGCAATAACTTTCAACACACTCCTGAATGGCCTTTGCAAGAATGATGAGGTCAATTTGGCCTTGAAAATGCTTTGCAAAATGACCGTGATGAATTGCTGTCCTGATGTTTTGACCTATAACACTATAATTTATGGCTTAATCAGAGAAAACAGAATTGATTATGCATTGTGGTTCTTCCATCAGATGAAGAAACGCCTATTTCCTGATCACATAACATTGTGCACCCTCCTTCCGGGTGTAGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTGCTGAGGACTTCGCATATCAGGTTGGAGTTCAAGCAGACAGGCCTTTTTGGGAAGATTTGATTGGAGGGGTTGTGATTCAAGCTGAAGTAGACCGAGCCATTTTATTTGCTGAAAGGTTGATTTCTGAGAGGATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTAGGAAAACTCTTGATGCTCAGAATTTGTTTGCAAAGTTTACTGGAACTCTTGGAGTTAAGCCAACACTAGAAGCATATAACTGTTTGATCGAATGGCTTCTTAAAGACCATTTCACTGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCCCCTGATGTATTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGACGAGATGATTTGCAGGGGATACAAGCCTAACACCATAACACACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAGATCTATATTATGATCTTGTAAGTGGTGATTTTTCTCCTTCTCCTTGTACATACGGCCCTCTCATAGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGTTGTAAGCCTAATTGTGCGATCTTCAATATTCTTATAAATGGTTTTTCGAAAACAGGTGATGTGGAAACTGCTTGCGAGTTGTTTAAAAGGATGATTAAAGAAGGAATAAGACCAGACCTGAAGTCATACACCATTCTCGTGGATTGCTACTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTAAGACGAAGTGGCCTTGATCCTGATTCAGTTTCCTACAACCTTATGATTAATGGACTTGGAAGATCACGGAGGATGGAGGAAGCTCTCGCTCTCTATGATGAAATGCGGACTAGAAGAATTACTCCCGATATTTTCACCTACAATTCATTAATACTCAACCTTGGACTTGTTGGAATGGTGGAGCAAGCAGGAAGGATTTATAAAGAGCTACAACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTTATTCGGCTGCATAGCAATTCTGGAAATCCAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGTAGGAACATATGCACAGCTTCCCAATCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1122

Amino Acids

126.24

Weight (kDa)

5.95

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	187 - 297	4.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	193 - 249	1.1e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	194 - 293	1.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	220 - 349	1.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	238 - 281	6.8e-08	PPR repeat family
PPR_3	PF13812	258 - 316	3.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	266 - 297	2.7e-07	PPR repeat
PPR	PF01535	272 - 302	2.4e-06	PPR repeat
PPR_2	PF13041	278 - 318	3.5e-11	PPR repeat family
PPR_1	PF12854	301 - 333	1.5e-11	PPR repeat
PPR_3	PF13812	304 - 350	8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	304 - 351	3.8e-15	PPR repeat family
PPR	PF01535	307 - 336	2.1e-06	PPR repeat
PPR_3	PF13812	327 - 379	2.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	342 - 388	4.1e-10	PPR repeat family
PPR_long	PF17177	356 - 456	5.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	365 - 418	6.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	371 - 403	1.6e-13	PPR repeat
PPR_2	PF13041	374 - 422	2.2e-16	PPR repeat family
PPR	PF01535	377 - 407	5.2e-07	PPR repeat
PPR_1	PF12854	406 - 437	1.3e-06	PPR repeat
PPR_2	PF13041	413 - 453	2.8e-10	PPR repeat family
PPR_3	PF13812	470 - 527	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	479 - 528	6.2e-10	PPR repeat family
PPR_1	PF12854	511 - 543	1.3e-09	PPR repeat
PPR_2	PF13041	514 - 551	7.9e-12	PPR repeat family
TPR_24	PF23276	515 - 611	8e-08	Fungal tetratrico peptide repeats
PPR	PF01535	517 - 547	3e-09	PPR repeat
PPR_3	PF13812	537 - 598	3.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	545 - 578	1.6e-06	PPR repeat
PPR_2	PF13041	550 - 596	3.9e-12	PPR repeat family
PPR_1	PF12854	582 - 613	1.3e-08	PPR repeat
PPR_2	PF13041	584 - 633	1.6e-19	PPR repeat family
PPR	PF01535	587 - 617	1.8e-07	PPR repeat
PPR_3	PF13812	608 - 663	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	616 - 648	6e-11	PPR repeat
PPR_2	PF13041	619 - 667	7.6e-14	PPR repeat family
PPR_1	PF12854	650 - 683	8.6e-08	PPR repeat
PPR_2	PF13041	654 - 701	1.6e-08	PPR repeat family
PPR_2	PF13041	797 - 842	9.6e-14	PPR repeat family
PPR_3	PF13812	819 - 878	3.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	827 - 858	5.5e-06	PPR repeat
PPR_2	PF13041	830 - 879	9.2e-14	PPR repeat family
PPR_3	PF13812	892 - 947	2.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	898 - 928	1.5e-07	PPR repeat
PPR_2	PF13041	900 - 936	5.5e-08	PPR repeat family
PPR	PF01535	904 - 933	5.5e-06	PPR repeat
PPR_long	PF17177	919 - 1009	6.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	932 - 963	4.9e-09	PPR repeat
PPR	PF01535	939 - 968	1.1e-07	PPR repeat
PPR_2	PF13041	939 - 984	8.9e-14	PPR repeat family
TPR_24	PF23276	949 - 1067	1.4e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	959 - 1018	5.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	967 - 997	1.7e-08	PPR repeat
PPR	PF01535	974 - 1003	5.8e-07	PPR repeat
PPR_2	PF13041	974 - 1018	6.3e-12	PPR repeat family
PPR_3	PF13812	995 - 1049	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	1002 - 1034	2.2e-08	PPR repeat
PPR_2	PF13041	1005 - 1049	2.7e-15	PPR repeat family
PPR	PF01535	1008 - 1037	3.4e-08	PPR repeat
PPR_long	PF17177	1013 - 1116	6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	1063 - 1116	4.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	1075 - 1116	1.6e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1557, 2831, 3195
Acc16I	TGCGCA	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	947
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccI	GTMKAC	4 cut(s)	498, 669, 2226, 3297
AccIII	TCCGGA	1 cut(s)	1540
AciI	CCGC	5 cut(s)	227, 851, 1267, 3100, 3318
AclWI	GGATC	2 cut(s)	2460, 3005
AcoI	YGGCCR	1 cut(s)	1693
AcsI	RAATTY	3 cut(s)	876, 1085, 2344
AcuI	CTGAAG	4 cut(s)	267, 1217, 2241, 2936
AfaI	GTAC	4 cut(s)	43, 840, 2317, 2710
AfiI	CCNNNNNNNGG	5 cut(s)	183, 679, 2092, 2653, 3335
AflII	CTTAAG	1 cut(s)	695
AflIII	ACRYGT	2 cut(s)	1245, 2318
AhdI	GACNNNNNGTC	1 cut(s)	2917
AhlI	ACTAGT	2 cut(s)	44, 71
AjnI	CCWGG	1 cut(s)	2949
AjuI	GAANNNNNNNTTGG	4 cut(s)	179, 211, 2181, 2213
Alw21I	GWGCWC	1 cut(s)	2084
Alw26I	GTCTC	1 cut(s)	1225
Alw44I	GTGCAC	1 cut(s)	2080
AlwI	GGATC	2 cut(s)	2460, 3005
Ama87I	CYCGRG	3 cut(s)	842, 1384, 1422
Aor13HI	TCCGGA	1 cut(s)	1540
ApaLI	GTGCAC	1 cut(s)	2080
ApoI	RAATTY	3 cut(s)	876, 1085, 2344
AseI	ATTAAT	2 cut(s)	3042, 3143
Asp700I	GAANNNNTTC	1 cut(s)	2418
AspLEI	GCGC	2 cut(s)	579, 2115
AspS9I	GGNCC	2 cut(s)	908, 2717
AsuC2I	CCSGG	1 cut(s)	2094
AsuHPI	GGTGA	7 cut(s)	271, 1215, 1391, 2491, 2699, 2864, 3121
AsuII	TTCGAA	1 cut(s)	2843
AvaI	CYCGRG	3 cut(s)	842, 1384, 1422
BaeGI	GKGCMC	2 cut(s)	2084, 2488
BanII	GRGCYC	1 cut(s)	801
BauI	CACGAG	1 cut(s)	2933
BbsI	GAAGAC	2 cut(s)	282, 2755
Bbv12I	GWGCWC	1 cut(s)	2084
BbvCI	CCTCAGC	2 cut(s)	1476, 2139
BceAI	ACGGC	1 cut(s)	2731
BciT130I	CCWGG	1 cut(s)	2951
BciVI	GTATCC	1 cut(s)	2579
BclI	TGATCA	2 cut(s)	216, 2065
BcnI	CCSGG	1 cut(s)	2094
BcoDI	GTCTC	1 cut(s)	1225
BcuI	ACTAGT	2 cut(s)	44, 71
BfaI	CTAG	8 cut(s)	45, 72, 375, 2276, 2390, 2648, 2753, 3105
BfmI	CTRYAG	3 cut(s)	1576, 2658, 3322
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	947
BfuI	GTATCC	1 cut(s)	2579
BglII	AGATCT	1 cut(s)	2662
BmcAI	AGTACT	1 cut(s)	840
Bme1390I	CCNGG	2 cut(s)	2094, 2951
BmeRI	GACNNNNNGTC	1 cut(s)	2917
BmeT110I	CYCGRG	3 cut(s)	842, 1384, 1422
BmgT120I	GGNCC	2 cut(s)	908, 2717
BmiI	GGNNCC	1 cut(s)	910
BmrFI	CCNGG	2 cut(s)	2094, 2951
BmsI	GCATC	8 cut(s)	459, 931, 1486, 2113, 2326, 2509, 2959, 3274
BpiI	GAAGAC	2 cut(s)	282, 2755
BpmI	CTGGAG	3 cut(s)	683, 1111, 2608
Bpu10I	CCTNAGC	3 cut(s)	800, 1476, 2139
Bpu14I	TTCGAA	1 cut(s)	2843
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	2094
BsaAI	YACGTR	1 cut(s)	2321
BsaI	GGTCTC	1 cut(s)	1225
BsaJI	CCNNGG	1 cut(s)	3154
BsaWI	WCCGGW	1 cut(s)	1540
BsaXI	ACNNNNNCTCC	2 cut(s)	2193, 2223
Bsc4I	CCNNNNNNNGG	5 cut(s)	183, 679, 2092, 2653, 3335
Bse1I	ACTGG	6 cut(s)	637, 1149, 1782, 2368, 2625, 3217
Bse3DI	GCAATG	2 cut(s)	360, 2769
BseAI	TCCGGA	1 cut(s)	1540
BseBI	CCWGG	1 cut(s)	2951
BseDI	CCNNGG	1 cut(s)	3154
BseLI	CCNNNNNNNGG	5 cut(s)	183, 679, 2092, 2653, 3335
BseMI	GCAATG	2 cut(s)	360, 2769
BseMII	CTCAG	8 cut(s)	285, 732, 814, 1467, 1632, 2130, 2253, 2354
BseNI	ACTGG	6 cut(s)	637, 1149, 1782, 2368, 2625, 3217
BseRI	GAGGAG	4 cut(s)	105, 1493, 2792, 3002
BseSI	GKGCMC	2 cut(s)	2084, 2488
BsiHKAI	GWGCWC	1 cut(s)	2084
BsiHKCI	CYCGRG	3 cut(s)	842, 1384, 1422
BsiSI	CCGG	2 cut(s)	1541, 2093
BslFI	GGGAC	1 cut(s)	3312
BslI	CCNNNNNNNGG	5 cut(s)	183, 679, 2092, 2653, 3335
BsmAI	GTCTC	1 cut(s)	1225
BsmFI	GGGAC	1 cut(s)	3312
BsmI	GAATGC	2 cut(s)	604, 1184
Bso31I	GGTCTC	1 cut(s)	1225
BsoBI	CYCGRG	3 cut(s)	842, 1384, 1422
Bsp119I	TTCGAA	1 cut(s)	2843
Bsp1286I	GDGCHC	3 cut(s)	801, 2084, 2488
Bsp13I	TCCGGA	1 cut(s)	1540
Bsp1407I	TGTACA	2 cut(s)	2315, 2708
BspACI	CCGC	5 cut(s)	227, 851, 1267, 3100, 3318
BspCNI	CTCAG	8 cut(s)	286, 731, 813, 1468, 1631, 2131, 2254, 2353
BspEI	TCCGGA	1 cut(s)	1540
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	1 cut(s)	910
BspMAI	CTGCAG	1 cut(s)	3326
BspMI	ACCTGC	1 cut(s)	947
BspPI	GGATC	2 cut(s)	2460, 3005
BspQI	GCTCTTC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	2843
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	1225
BsrDI	GCAATG	2 cut(s)	360, 2769
BsrGI	TGTACA	2 cut(s)	2315, 2708
BsrI	ACTGG	6 cut(s)	637, 1149, 1782, 2368, 2625, 3217
BssECI	CCNNGG	1 cut(s)	3154
BssNAI	GTATAC	1 cut(s)	670
BssSI	CACGAG	1 cut(s)	2933
BssT1I	CCWWGG	1 cut(s)	3154
Bst1107I	GTATAC	1 cut(s)	670
Bst2BI	CACGAG	1 cut(s)	2933
Bst2UI	CCWGG	1 cut(s)	2951
Bst6I	CTCTTC	3 cut(s)	28, 1304, 2953
BstAFI	CTTAAG	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	1334
BstAUI	TGTACA	2 cut(s)	2315, 2708
BstBAI	YACGTR	1 cut(s)	2321
BstBI	TTCGAA	1 cut(s)	2843
BstC8I	GCNNGC	4 cut(s)	1693, 2479, 2869, 3180
BstDEI	CTNAG	8 cut(s)	294, 718, 800, 1476, 1618, 2139, 2262, 2340
BstHHI	GCGC	2 cut(s)	579, 2115
BstMAI	GTCTC	1 cut(s)	1225
BstMWI	GCNNNNNNNGC	8 cut(s)	232, 235, 238, 560, 1334, 1400, 1454, 2483
BstNI	CCWGG	1 cut(s)	2951
BstNSI	RCATGY	2 cut(s)	412, 1681
BstSCI	CCNGG	2 cut(s)	2092, 2949
BstSFI	CTRYAG	3 cut(s)	1576, 2658, 3322
BstSLI	GKGCMC	2 cut(s)	2084, 2488
BstV2I	GAAGAC	2 cut(s)	282, 2755
BstX2I	RGATCY	2 cut(s)	2452, 2662
BstXI	CCANNNNNNTGG	1 cut(s)	2935
BstYI	RGATCY	2 cut(s)	2452, 2662
BstZ17I	GTATAC	1 cut(s)	670
BsuI	GTATCC	1 cut(s)	2579
BtsIMutI	CAGTG	5 cut(s)	291, 390, 1534, 2436, 2544
BveI	ACCTGC	1 cut(s)	947
Cac8I	GCNNGC	4 cut(s)	1693, 2479, 2869, 3180
CciI	TCATGA	1 cut(s)	1203
CfoI	GCGC	2 cut(s)	579, 2115
Cfr13I	GGNCC	2 cut(s)	908, 2717
Csp6I	GTAC	4 cut(s)	42, 839, 2316, 2709
CviAII	CATG	8 cut(s)	409, 1204, 1283, 1561, 1678, 1710, 2525, 3307
CviQI	GTAC	4 cut(s)	42, 839, 2316, 2709
DdeI	CTNAG	8 cut(s)	294, 718, 800, 1476, 1618, 2139, 2262, 2340
DraI	TTTAAA	1 cut(s)	2881
DriI	GACNNNNNGTC	1 cut(s)	2917
EaeI	YGGCCR	1 cut(s)	1693
Eam1104I	CTCTTC	3 cut(s)	28, 1304, 2953
Eam1105I	GACNNNNNGTC	1 cut(s)	2917
EarI	CTCTTC	3 cut(s)	28, 1304, 2953
Eco130I	CCWWGG	1 cut(s)	3154
Eco147I	AGGCCT	2 cut(s)	805, 2179
Eco24I	GRGCYC	1 cut(s)	801
Eco31I	GGTCTC	1 cut(s)	1225
Eco32I	GATATC	1 cut(s)	1201
Eco57I	CTGAAG	4 cut(s)	267, 1217, 2241, 2936
Eco88I	CYCGRG	3 cut(s)	842, 1384, 1422
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	1 cut(s)	2949
EcoRV	GATATC	1 cut(s)	1201
EcoT14I	CCWWGG	1 cut(s)	3154
EcoT22I	ATGCAT	4 cut(s)	604, 833, 2026, 2769
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	3154
FaeI	CATG	8 cut(s)	412, 1207, 1286, 1564, 1681, 1713, 2528, 3310
FaqI	GGGAC	1 cut(s)	3312
FatI	CATG	8 cut(s)	408, 1203, 1282, 1560, 1677, 1709, 2524, 3306
FauI	CCCGC	1 cut(s)	844
FauNDI	CATATG	2 cut(s)	871, 3343
FbaI	TGATCA	2 cut(s)	216, 2065
FblI	GTMKAC	4 cut(s)	498, 669, 2226, 3297
FriOI	GRGCYC	1 cut(s)	801
FspBI	CTAG	8 cut(s)	45, 72, 375, 2276, 2390, 2648, 2753, 3105
FspI	TGCGCA	1 cut(s)	578
GlaI	GCGC	2 cut(s)	578, 2114
GsuI	CTGGAG	3 cut(s)	683, 1111, 2608
HapII	CCGG	2 cut(s)	1541, 2093
HhaI	GCGC	2 cut(s)	579, 2115
Hin1II	CATG	8 cut(s)	412, 1207, 1286, 1564, 1681, 1713, 2528, 3310
Hin6I	GCGC	2 cut(s)	577, 2113
HinP1I	GCGC	2 cut(s)	577, 2113
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	2445
HinfI	GANTC	9 cut(s)	382, 544, 1151, 1313, 1382, 1544, 2212, 2282, 3017
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	1541, 2093
HphI	GGTGA	7 cut(s)	271, 1215, 1391, 2491, 2699, 2864, 3121
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	9 cut(s)	564, 683, 741, 1208, 1726, 2099, 2709, 2891, 3180
HpyCH4IV	ACGT	3 cut(s)	915, 1247, 2320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	232, 235, 238, 560, 1334, 1400, 1454, 2483
HpyF3I	CTNAG	8 cut(s)	294, 718, 800, 1476, 1618, 2139, 2262, 2340
HpySE526I	ACGT	3 cut(s)	915, 1247, 2320
Hsp92II	CATG	8 cut(s)	412, 1207, 1286, 1564, 1681, 1713, 2528, 3310
HspAI	GCGC	2 cut(s)	577, 2113
Kpn2I	TCCGGA	1 cut(s)	1540
Ksp22I	TGATCA	2 cut(s)	216, 2065
KspAI	GTTAAC	1 cut(s)	487
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	1123, 3175
LweI	GCATC	8 cut(s)	459, 931, 1486, 2113, 2326, 2509, 2959, 3274
MaeI	CTAG	8 cut(s)	45, 72, 375, 2276, 2390, 2648, 2753, 3105
MaeII	ACGT	3 cut(s)	915, 1247, 2320
MaeIII	GTNAC	8 cut(s)	304, 1024, 1129, 1379, 1549, 1611, 1759, 2511
MflI	RGATCY	2 cut(s)	2452, 2662
MhlI	GDGCHC	3 cut(s)	801, 2084, 2488
MlyI	GAGTC	1 cut(s)	1376
MmeI	TCCRAC	4 cut(s)	1176, 1775, 2140, 3145
Mph1103I	ATGCAT	4 cut(s)	604, 833, 2026, 2769
MroI	TCCGGA	1 cut(s)	1540
MroXI	GAANNNNTTC	1 cut(s)	2418
MslI	CAYNNNNRTG	3 cut(s)	1509, 1565, 2933
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	2 cut(s)	1541, 2093
MspR9I	CCNGG	2 cut(s)	2094, 2951
Mva1269I	GAATGC	2 cut(s)	604, 1184
MvaI	CCWGG	1 cut(s)	2951
MwoI	GCNNNNNNNGC	8 cut(s)	232, 235, 238, 560, 1334, 1400, 1454, 2483
NciI	CCSGG	1 cut(s)	2094
NdeI	CATATG	2 cut(s)	871, 3343
NlaIII	CATG	8 cut(s)	412, 1207, 1286, 1564, 1681, 1713, 2528, 3310
NlaIV	GGNNCC	1 cut(s)	910
NmeAIII	GCCGAG	3 cut(s)	391, 726, 1721
NmuCI	GTSAC	3 cut(s)	304, 1379, 1759
NsbI	TGCGCA	1 cut(s)	578
NsiI	ATGCAT	4 cut(s)	604, 833, 2026, 2769
NspI	RCATGY	2 cut(s)	412, 1681
NspV	TTCGAA	1 cut(s)	2843
PaeR7I	CTCGAG	1 cut(s)	1422
PagI	TCATGA	1 cut(s)	1203
PceI	AGGCCT	2 cut(s)	805, 2179
PciSI	GCTCTTC	1 cut(s)	28
PctI	GAATGC	2 cut(s)	604, 1184
PdmI	GAANNNNTTC	1 cut(s)	2418
PfeI	GAWTC	8 cut(s)	382, 544, 1151, 1313, 1544, 2212, 2282, 3017
PflMI	CCANNNNNTGG	1 cut(s)	679
PleI	GAGTC	1 cut(s)	1376
PpsI	GAGTC	1 cut(s)	1376
Ppu21I	YACGTR	1 cut(s)	2321
PshBI	ATTAAT	2 cut(s)	3042, 3143
PsiI	TTATAA	3 cut(s)	1557, 2831, 3195
Psp6I	CCWGG	1 cut(s)	2949
PspGI	CCWGG	1 cut(s)	2949
PspN4I	GGNNCC	1 cut(s)	910
PspPI	GGNCC	2 cut(s)	908, 2717
PspXI	VCTCGAGB	1 cut(s)	1422
PstI	CTGCAG	1 cut(s)	3326
PsuI	RGATCY	2 cut(s)	2452, 2662
RsaI	GTAC	4 cut(s)	43, 840, 2317, 2710
RsaNI	GTAC	4 cut(s)	42, 839, 2316, 2709
RseI	CAYNNNNRTG	3 cut(s)	1509, 1565, 2933
SapI	GCTCTTC	1 cut(s)	28
Sau96I	GGNCC	2 cut(s)	908, 2717
ScaI	AGTACT	1 cut(s)	840
SchI	GAGTC	1 cut(s)	1376
ScrFI	CCNGG	2 cut(s)	2094, 2951
SduI	GDGCHC	3 cut(s)	801, 2084, 2488
SfaNI	GCATC	8 cut(s)	459, 931, 1486, 2113, 2326, 2509, 2959, 3274
SfcI	CTRYAG	3 cut(s)	1576, 2658, 3322
Sfr274I	CTCGAG	1 cut(s)	1422
SfuI	TTCGAA	1 cut(s)	2843
SlaI	CTCGAG	1 cut(s)	1422
SmiMI	CAYNNNNRTG	3 cut(s)	1509, 1565, 2933
SmlI	CTYRAG	3 cut(s)	695, 707, 1422
SmoI	CTYRAG	3 cut(s)	695, 707, 1422
SpeI	ACTAGT	2 cut(s)	44, 71
SseBI	AGGCCT	2 cut(s)	805, 2179
SsiI	CCGC	5 cut(s)	227, 851, 1267, 3100, 3318
SspI	AATATT	2 cut(s)	1441, 2824
SspMI	CTAG	8 cut(s)	45, 72, 375, 2276, 2390, 2648, 2753, 3105
StuI	AGGCCT	2 cut(s)	805, 2179
StyD4I	CCNGG	2 cut(s)	2092, 2949
StyI	CCWWGG	1 cut(s)	3154
TaiI	ACGT	3 cut(s)	918, 1250, 2323
TaqI	TCGA	6 cut(s)	547, 1359, 1423, 2305, 2412, 2843
TaqII	GACCGA	1 cut(s)	2244
TatI	WGTACW	4 cut(s)	41, 838, 2315, 2708
TauI	GCSGC	2 cut(s)	229, 3321
TfiI	GAWTC	8 cut(s)	382, 544, 1151, 1313, 1544, 2212, 2282, 3017
TscAI	CASTG	5 cut(s)	291, 397, 1534, 2443, 2551
TseFI	GTSAC	3 cut(s)	304, 1379, 1759
Tsp45I	GTSAC	3 cut(s)	304, 1379, 1759
TspGWI	ACGGA	1 cut(s)	3076
TspRI	CASTG	5 cut(s)	291, 397, 1534, 2443, 2551
Van91I	CCANNNNNTGG	1 cut(s)	679
Vha464I	CTTAAG	1 cut(s)	695
VneI	GTGCAC	1 cut(s)	2080
VspI	ATTAAT	2 cut(s)	3042, 3143
XapI	RAATTY	3 cut(s)	876, 1085, 2344
XceI	RCATGY	2 cut(s)	412, 1681
XhoI	CTCGAG	1 cut(s)	1422
XmiI	GTMKAC	4 cut(s)	498, 669, 2226, 3297
XmnI	GAANNNNTTC	1 cut(s)	2418
XspI	CTAG	8 cut(s)	45, 72, 375, 2276, 2390, 2648, 2753, 3105
ZrmI	AGTACT	1 cut(s)	840
Zsp2I	ATGCAT	4 cut(s)	604, 833, 2026, 2769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.