Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014408

Physical Location & Seq

Genomic Coordinates Reverse (-)

59824565 .. 59827897

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG413300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3333 bp

ATGTGCTGCTGTACTAGTCTTGCTTATACTGACACCACCACTAGTAGTAGTAGGATATTTGCTATAAGCACCCACACTCCTCCTCCTGTTCTACATCCACCAAAATCAAAGGTTTGGCCTTGTGGTTCGCTGCTCAACTTGACCAGCAAGAGGAACAAAAGGTTGGGTTTCTGTGGCTTTGTGATCAAAAGGCCGCAGCAGCAGCAGGTGGTGGTGGTGGTGAAGAAGAAGAACAAGCCCAAAACTTCAGTGTCTTCTGAGGAAGTTGTGACGGTTCTAAAGTCCATTTCAGACCCGACTTCTTCCTTTTCATTCTTTAAGTCCATTGCTGAGTTGCCTAGTGTGATTCACACCACTGAAACTTGTAATTACATGCTTCAACTCTTGGGTGTTCATAGGAGGGTGGATGATATGGCTTTTGTGTTTGATTTGATGCAAAAGCATATCATTAACAGGAGTGTAGACACTTACCTCATTATATTTAAGGGTCTTAATATAAGAGGCGGGATTCGAGCAGCCCCGTATGCTCTTGGAAGGTTGCGCAAAAATGGGTTTATCTTGAATGCATATTCATACAATGGCTTGATCTATATGCTTATCCAGTCTGGCTATTGTAGGGAGGCTCTGGAGGTATACCAAAGGGTGGTGTCAGAAGGACTTAAGCCGAGCCTCAAGACTTACTCAGCACTTATGGTGGCATTGGGAAAGAGAAGGGATGTTCAAACTGTTATGGGCTTACTAAAAGAGATGGAAACTTTGGGGCTCAGGCCTAATGTTTATACTTTCACTATATGCATTAGAGTACTCGGGAGGGCAGGGAAAATTGACGAGGCATATGAAATTTTCAAGAGGATGGATGATGAGGGATGTGGCCCCGACGTTATCACTTATACTGTTCTCATTGATGCTCTTTGTAATGCAGGTAAACTTGATAATGCCAAGAAGTTGTTTGCAAATATGAAAGCAAGTGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGTGATAGTAGAGACTTGGACACAGTAAAAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTTACTTTCACTATACTGGTTGATTCTTTATGCAAAGCTGGAAATGTAGATGAGGCATTCAATATGTTGGATATCATGAGGAAAGAAGGGGTCTCACCAAATCTTCATACCTACAACACGTTAATTTGCGGACTTCTGCGGTTATGTAGGTTGGATGAGGCATTGGAACTCTTCAGCAGTATGGATTCTCTTGGTGTTGCACCTACTGCTTACACATACATCCTTTTCATTGACTATTATGGAAAGTCTGGTGACTCGGGAAAAGCTATTGAGGCATTTGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCTTTGTATGGTCTTGCTGAGGAGGGCAGACTTCAAGATGCAAAACATATTTATGATGAGCTTATATACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAAGGTGGGGCAAATAGATGAAGCCATCAAGTTACTCTCAGAGATGGAAAGAAATGGGTGTGAGGCTGATGTCATCATAGTTAATTCGTTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAATTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCAGAAAAGCTATTGAAATGTTTGAGAATATGACTGAACAAGGGTGTCCTCCAAATGCAATAACTTTCAACACACTCCTGAATGGCCTTTGCAAGAATGATGAGGTCAATTTGGCCTTGAAAATGCTTTGCAAGATGACCGTGATGAATTGCTGTCCTGATGTTTTGACCTATAACACTATAATTTATGGCTTAATCAGAGAAAACAGAATTGATTATGCATTCTGGTTCTTCCATCAGATGAAGAAACGCCTATTTCCTGATCATATAACATTGTGCACCCTCCTTCCGGGTGTAGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTGCTGAGGACTTTGCATATCAGGTTGGAGTTCAAGCAGACAGGCCTTTTTGGGAGGATTTGATTGGAGGGGTTGTGATTCAAGCTGAAGTAGACCGAGCCATTTTATTTGCTGAAAGGTTGATTTCTGAGAGGATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTAGGAAAACTCTTGATGCTCAGAATTTGTTTGCAAAGTTTACTGGAACTCTTGGAGTTAAGCCAACACTAGAAGCATATAACTGTTTGATCGAATGGCTTCTTAAAGACCATTTCACTGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCCCCTGATGTGTTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGACGAGATGATTTGCAGGGGATACAAGCCTAACACCATAACGCACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAGATCTATATTATGATCTTGTAAGTGGTGATTTTTCTCCTTCTCCTTGTACATACGGCCCTCTCATAGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGTTGTAAGCCTAATTGTGCGATCTTCAATATTCTTATAAATGGTTTTTCAAAAACAGGTGATGTGGAAACTGCTTGCGAGTTGTTTAAAAGGATGATTAAAGAAGGAATAAGACCAGACCTGAAGTCGTACACCATTCTCGTGGATTGCTACTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTAAGACGAAGTGGCCTTGATCCTGATTCAGTTTCCTACAACCTTATGATTAATGGACTTGGAAGATCACGGAGGATGGAGGAAGCTCTCGCTCTTTATGATGAAATGCGGACTAGAAGAATTACTCCCGATATTTTCACCTACAATTCATTAATACTCAACCTTGGACTTGTTGGAATGGTGGAGCAAGCAGGAAGGATTTATAAAGAGCTACAACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTCATTCGGCTGCATAGCACTTCTGGAAATCCAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGTAGGAACATATGCACAGCTTCCCAATCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1110

Amino Acids

125.04

Weight (kDa)

6.01

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	175 - 285	4.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	181 - 237	1.1e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	183 - 281	1.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	226 - 269	6.8e-08	PPR repeat family
PPR_3	PF13812	246 - 304	3.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	254 - 285	2.6e-07	PPR repeat
PPR	PF01535	260 - 290	2.4e-06	PPR repeat
PPR_2	PF13041	266 - 306	3.5e-11	PPR repeat family
PPR_1	PF12854	289 - 321	1.5e-11	PPR repeat
PPR_2	PF13041	292 - 339	3.8e-15	PPR repeat family
PPR_3	PF13812	292 - 339	7.3e-07	Pentatricopeptide repeat domain
PPR	PF01535	295 - 324	2.1e-06	PPR repeat
PPR_3	PF13812	315 - 367	4.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	330 - 376	5.8e-10	PPR repeat family
PPR_long	PF17177	345 - 460	5.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	353 - 406	6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	359 - 391	1.5e-13	PPR repeat
PPR_2	PF13041	362 - 410	8.9e-17	PPR repeat family
PPR	PF01535	365 - 395	5.1e-07	PPR repeat
PPR_1	PF12854	394 - 425	4.5e-07	PPR repeat
PPR_2	PF13041	400 - 441	3.3e-10	PPR repeat family
PPR	PF01535	401 - 430	9.1e-06	PPR repeat
PPR_3	PF13812	458 - 515	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	467 - 516	6.2e-10	PPR repeat family
PPR_1	PF12854	499 - 531	1.3e-09	PPR repeat
TPR_24	PF23276	499 - 599	2.9e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	502 - 539	7.8e-12	PPR repeat family
PPR	PF01535	505 - 535	3e-09	PPR repeat
PPR_long	PF17177	521 - 616	1.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	525 - 586	3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	533 - 566	1.6e-06	PPR repeat
PPR_2	PF13041	538 - 584	9e-12	PPR repeat family
PPR_1	PF12854	570 - 601	6e-08	PPR repeat
PPR_2	PF13041	572 - 621	3e-19	PPR repeat family
PPR	PF01535	575 - 605	1.7e-07	PPR repeat
PPR_3	PF13812	596 - 651	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	604 - 636	5.9e-11	PPR repeat
PPR_2	PF13041	607 - 655	7.6e-14	PPR repeat family
PPR_1	PF12854	638 - 671	2e-08	PPR repeat
PPR_2	PF13041	642 - 689	5.9e-09	PPR repeat family
PPR_2	PF13041	785 - 830	9.5e-14	PPR repeat family
PPR_3	PF13812	807 - 866	3.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	815 - 846	5.4e-06	PPR repeat
PPR_2	PF13041	818 - 867	9.1e-14	PPR repeat family
PPR_3	PF13812	880 - 935	2.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	886 - 916	1.5e-07	PPR repeat
PPR_2	PF13041	888 - 924	5.5e-08	PPR repeat family
PPR	PF01535	892 - 921	5.4e-06	PPR repeat
PPR_long	PF17177	907 - 997	6.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	920 - 951	4.8e-09	PPR repeat
PPR_2	PF13041	926 - 972	6.6e-14	PPR repeat family
PPR	PF01535	927 - 956	1e-07	PPR repeat
TPR_24	PF23276	937 - 1055	1.4e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	947 - 1006	5.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	955 - 985	1.7e-08	PPR repeat
PPR	PF01535	962 - 991	5.7e-07	PPR repeat
PPR_2	PF13041	962 - 1006	6.3e-12	PPR repeat family
PPR_3	PF13812	983 - 1037	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	990 - 1022	2.1e-08	PPR repeat
PPR_2	PF13041	993 - 1037	2.7e-15	PPR repeat family
PPR	PF01535	996 - 1025	3.3e-08	PPR repeat
PPR_long	PF17177	1001 - 1104	6.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	1051 - 1104	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	1063 - 1104	3.7e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31850
fragaria_vesca	FvH4_2g41180 FvH4_2g41180
malus_domestica	MD08G1055800.v1.1
prunus_persica	Prupe.1G394600_v2.0.a1 Prupe.1G394600_v2.0.a1
pyrus_communis	pycom08g04580
rosa_chinensis	RchiOBHm_Chr6g0299351
rosa_laevigata	RLG00000011440
rosa_multiflora	Rmu_ssc0000374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168770
rosa_rugosa	Rorug06G0287500
rosa_samantha	Rh6AG399000 Rh6BG407400 Rh6CG413300 Rh6DG400200
rosa_wichuraiana	Rw6G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1521, 2795, 3159
AarI	CACCTGC	1 cut(s)	196
Acc16I	TGCGCA	1 cut(s)	542
Acc36I	ACCTGC	2 cut(s)	196, 911
AccB7I	CCANNNNNTGG	1 cut(s)	643
AccI	GTMKAC	4 cut(s)	462, 633, 2190, 3261
AccIII	TCCGGA	1 cut(s)	1504
AciI	CCGC	6 cut(s)	194, 504, 1221, 1231, 3064, 3282
AclWI	GGATC	2 cut(s)	2424, 2969
AcoI	YGGCCR	1 cut(s)	1657
AcsI	RAATTY	3 cut(s)	840, 1049, 2308
AcuI	CTGAAG	4 cut(s)	231, 1249, 2205, 2900
AfaI	GTAC	5 cut(s)	13, 804, 2281, 2674, 2888
AfiI	CCNNNNNNNGG	5 cut(s)	150, 643, 2056, 2617, 3299
AflII	CTTAAG	1 cut(s)	659
AflIII	ACRYGT	2 cut(s)	1209, 2282
AhdI	GACNNNNNGTC	1 cut(s)	2881
AhlI	ACTAGT	2 cut(s)	14, 41
AjnI	CCWGG	1 cut(s)	2913
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
Alw21I	GWGCWC	1 cut(s)	2048
Alw26I	GTCTC	2 cut(s)	1023, 1189
Alw44I	GTGCAC	1 cut(s)	2044
AlwI	GGATC	2 cut(s)	2424, 2969
Ama87I	CYCGRG	3 cut(s)	806, 1348, 1386
Aor13HI	TCCGGA	1 cut(s)	1504
ApaLI	GTGCAC	1 cut(s)	2044
ApoI	RAATTY	3 cut(s)	840, 1049, 2308
AseI	ATTAAT	2 cut(s)	3006, 3107
Asp700I	GAANNNNTTC	1 cut(s)	2382
AspLEI	GCGC	2 cut(s)	543, 2079
AspS9I	GGNCC	2 cut(s)	872, 2681
AsuC2I	CCSGG	1 cut(s)	2058
AsuHPI	GGTGA	7 cut(s)	232, 1179, 1355, 2455, 2663, 2828, 3085
AvaI	CYCGRG	3 cut(s)	806, 1348, 1386
BaeGI	GKGCMC	2 cut(s)	2048, 2452
BanII	GRGCYC	1 cut(s)	765
BauI	CACGAG	1 cut(s)	2897
BbsI	GAAGAC	2 cut(s)	246, 2719
Bbv12I	GWGCWC	1 cut(s)	2048
BbvCI	CCTCAGC	2 cut(s)	1440, 2103
BbvI	GCAGC	9 cut(s)	117, 208, 211, 214, 527, 990, 1732, 3207, 3272
BceAI	ACGGC	1 cut(s)	2695
BciT130I	CCWGG	1 cut(s)	2915
BciVI	GTATCC	1 cut(s)	2543
BclI	TGATCA	2 cut(s)	183, 2029
BcnI	CCSGG	1 cut(s)	2058
BcoDI	GTCTC	2 cut(s)	1023, 1189
BcuI	ACTAGT	2 cut(s)	14, 41
BfaI	CTAG	8 cut(s)	15, 42, 339, 2240, 2354, 2612, 2717, 3069
BfmI	CTRYAG	3 cut(s)	1540, 2622, 3286
BfrI	CTTAAG	1 cut(s)	659
BfuAI	ACCTGC	2 cut(s)	196, 911
BfuI	GTATCC	1 cut(s)	2543
BglII	AGATCT	1 cut(s)	2626
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	2 cut(s)	2058, 2915
BmeRI	GACNNNNNGTC	1 cut(s)	2881
BmeT110I	CYCGRG	3 cut(s)	806, 1348, 1386
BmgT120I	GGNCC	2 cut(s)	872, 2681
BmiI	GGNNCC	1 cut(s)	874
BmrFI	CCNGG	2 cut(s)	2058, 2915
BmsI	GCATC	8 cut(s)	423, 895, 1450, 2077, 2290, 2473, 2923, 3238
BpiI	GAAGAC	2 cut(s)	246, 2719
BpmI	CTGGAG	3 cut(s)	647, 1075, 2572
Bpu10I	CCTNAGC	3 cut(s)	764, 1440, 2103
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	2058
BsaAI	YACGTR	1 cut(s)	2285
BsaI	GGTCTC	1 cut(s)	1189
BsaJI	CCNNGG	1 cut(s)	3118
BsaWI	WCCGGW	1 cut(s)	1504
BsaXI	ACNNNNNCTCC	6 cut(s)	61, 67, 91, 97, 2157, 2187
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 643, 2056, 2617, 3299
Bse1I	ACTGG	6 cut(s)	601, 1113, 1746, 2332, 2589, 3181
Bse3DI	GCAATG	2 cut(s)	324, 2733
BseAI	TCCGGA	1 cut(s)	1504
BseBI	CCWGG	1 cut(s)	2915
BseDI	CCNNGG	1 cut(s)	3118
BseLI	CCNNNNNNNGG	5 cut(s)	150, 643, 2056, 2617, 3299
BseMI	GCAATG	2 cut(s)	324, 2733
BseMII	CTCAG	9 cut(s)	249, 321, 696, 778, 1431, 1596, 2094, 2217, 2318
BseNI	ACTGG	6 cut(s)	601, 1113, 1746, 2332, 2589, 3181
BseRI	GAGGAG	5 cut(s)	69, 72, 1457, 2756, 2966
BseSI	GKGCMC	2 cut(s)	2048, 2452
BseXI	GCAGC	9 cut(s)	117, 208, 211, 214, 527, 990, 1732, 3207, 3272
BsiHKAI	GWGCWC	1 cut(s)	2048
BsiHKCI	CYCGRG	3 cut(s)	806, 1348, 1386
BsiSI	CCGG	2 cut(s)	1505, 2057
BslFI	GGGAC	1 cut(s)	3276
BslI	CCNNNNNNNGG	5 cut(s)	150, 643, 2056, 2617, 3299
BsmAI	GTCTC	2 cut(s)	1023, 1189
BsmFI	GGGAC	1 cut(s)	3276
BsmI	GAATGC	3 cut(s)	568, 1148, 1988
Bso31I	GGTCTC	1 cut(s)	1189
BsoBI	CYCGRG	3 cut(s)	806, 1348, 1386
Bsp1286I	GDGCHC	3 cut(s)	765, 2048, 2452
Bsp13I	TCCGGA	1 cut(s)	1504
Bsp1407I	TGTACA	2 cut(s)	2279, 2672
BspACI	CCGC	6 cut(s)	194, 504, 1221, 1231, 3064, 3282
BspCNI	CTCAG	9 cut(s)	250, 322, 695, 777, 1432, 1595, 2095, 2218, 2317
BspEI	TCCGGA	1 cut(s)	1504
BspHI	TCATGA	1 cut(s)	1167
BspLI	GGNNCC	1 cut(s)	874
BspMAI	CTGCAG	1 cut(s)	3290
BspMI	ACCTGC	2 cut(s)	196, 911
BspPI	GGATC	2 cut(s)	2424, 2969
BspTI	CTTAAG	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	1189
BsrDI	GCAATG	2 cut(s)	324, 2733
BsrGI	TGTACA	2 cut(s)	2279, 2672
BsrI	ACTGG	6 cut(s)	601, 1113, 1746, 2332, 2589, 3181
BssECI	CCNNGG	1 cut(s)	3118
BssNAI	GTATAC	1 cut(s)	634
BssSI	CACGAG	1 cut(s)	2897
BssT1I	CCWWGG	1 cut(s)	3118
Bst1107I	GTATAC	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	2897
Bst2UI	CCWGG	1 cut(s)	2915
Bst4CI	ACNGT	7 cut(s)	274, 727, 895, 1042, 1493, 1909, 2369
Bst6I	CTCTTC	2 cut(s)	1268, 2917
BstAFI	CTTAAG	1 cut(s)	659
BstAPI	GCANNNNNTGC	1 cut(s)	1298
BstAUI	TGTACA	2 cut(s)	2279, 2672
BstBAI	YACGTR	1 cut(s)	2285
BstC8I	GCNNGC	4 cut(s)	1657, 2443, 2833, 3144
BstDEI	CTNAG	9 cut(s)	258, 330, 682, 764, 1440, 1582, 2103, 2226, 2304
BstHHI	GCGC	2 cut(s)	543, 2079
BstMAI	GTCTC	2 cut(s)	1023, 1189
BstMWI	GCNNNNNNNGC	7 cut(s)	199, 202, 524, 1298, 1364, 1418, 2447
BstNI	CCWGG	1 cut(s)	2915
BstNSI	RCATGY	2 cut(s)	376, 1645
BstSCI	CCNGG	2 cut(s)	2056, 2913
BstSFI	CTRYAG	3 cut(s)	1540, 2622, 3286
BstSLI	GKGCMC	2 cut(s)	2048, 2452
BstV1I	GCAGC	9 cut(s)	117, 208, 211, 214, 527, 990, 1732, 3207, 3272
BstV2I	GAAGAC	2 cut(s)	246, 2719
BstX2I	RGATCY	2 cut(s)	2416, 2626
BstXI	CCANNNNNNTGG	1 cut(s)	2899
BstYI	RGATCY	2 cut(s)	2416, 2626
BstZ17I	GTATAC	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	2543
BtsIMutI	CAGTG	5 cut(s)	255, 354, 1498, 2400, 2508
BveI	ACCTGC	2 cut(s)	196, 911
Cac8I	GCNNGC	4 cut(s)	1657, 2443, 2833, 3144
CciI	TCATGA	1 cut(s)	1167
CfoI	GCGC	2 cut(s)	543, 2079
Cfr13I	GGNCC	2 cut(s)	872, 2681
Csp6I	GTAC	5 cut(s)	12, 803, 2280, 2673, 2887
CviAII	CATG	7 cut(s)	373, 1168, 1525, 1642, 1674, 2489, 3271
CviQI	GTAC	5 cut(s)	12, 803, 2280, 2673, 2887
DdeI	CTNAG	9 cut(s)	258, 330, 682, 764, 1440, 1582, 2103, 2226, 2304
DraI	TTTAAA	1 cut(s)	2845
DriI	GACNNNNNGTC	1 cut(s)	2881
EaeI	YGGCCR	1 cut(s)	1657
Eam1104I	CTCTTC	2 cut(s)	1268, 2917
Eam1105I	GACNNNNNGTC	1 cut(s)	2881
EarI	CTCTTC	2 cut(s)	1268, 2917
Eco130I	CCWWGG	1 cut(s)	3118
Eco147I	AGGCCT	2 cut(s)	769, 2143
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	1189
Eco32I	GATATC	1 cut(s)	1165
Eco57I	CTGAAG	4 cut(s)	231, 1249, 2205, 2900
Eco88I	CYCGRG	3 cut(s)	806, 1348, 1386
EcoRI	GAATTC	1 cut(s)	1049
EcoRII	CCWGG	1 cut(s)	2913
EcoRV	GATATC	1 cut(s)	1165
EcoT14I	CCWWGG	1 cut(s)	3118
EcoT22I	ATGCAT	4 cut(s)	568, 797, 1990, 2733
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	3118
FaeI	CATG	7 cut(s)	376, 1171, 1528, 1645, 1677, 2492, 3274
FaqI	GGGAC	1 cut(s)	3276
FatI	CATG	7 cut(s)	372, 1167, 1524, 1641, 1673, 2488, 3270
FauI	CCCGC	1 cut(s)	497
FauNDI	CATATG	2 cut(s)	835, 3307
FbaI	TGATCA	2 cut(s)	183, 2029
FblI	GTMKAC	4 cut(s)	462, 633, 2190, 3261
FriOI	GRGCYC	1 cut(s)	765
FspBI	CTAG	8 cut(s)	15, 42, 339, 2240, 2354, 2612, 2717, 3069
FspI	TGCGCA	1 cut(s)	542
GlaI	GCGC	2 cut(s)	542, 2078
GsuI	CTGGAG	3 cut(s)	647, 1075, 2572
HapII	CCGG	2 cut(s)	1505, 2057
HhaI	GCGC	2 cut(s)	543, 2079
Hin1II	CATG	7 cut(s)	376, 1171, 1528, 1645, 1677, 2492, 3274
Hin6I	GCGC	2 cut(s)	541, 2077
HinP1I	GCGC	2 cut(s)	541, 2077
HindIII	AAGCTT	1 cut(s)	2409
HinfI	GANTC	9 cut(s)	346, 508, 1115, 1277, 1346, 1508, 2176, 2246, 2981
HpaII	CCGG	2 cut(s)	1505, 2057
HphI	GGTGA	7 cut(s)	232, 1179, 1355, 2455, 2663, 2828, 3085
Hpy99I	CGWCG	1 cut(s)	881
HpyAV	CCTTC	9 cut(s)	528, 647, 705, 1172, 1690, 2063, 2673, 2855, 3144
HpyCH4III	ACNGT	7 cut(s)	274, 727, 895, 1042, 1493, 1909, 2369
HpyCH4IV	ACGT	3 cut(s)	879, 1211, 2284
HpyF10VI	GCNNNNNNNGC	7 cut(s)	199, 202, 524, 1298, 1364, 1418, 2447
HpyF3I	CTNAG	9 cut(s)	258, 330, 682, 764, 1440, 1582, 2103, 2226, 2304
HpySE526I	ACGT	3 cut(s)	879, 1211, 2284
Hsp92II	CATG	7 cut(s)	376, 1171, 1528, 1645, 1677, 2492, 3274
HspAI	GCGC	2 cut(s)	541, 2077
Kpn2I	TCCGGA	1 cut(s)	1504
Ksp22I	TGATCA	2 cut(s)	183, 2029
LmnI	GCTCC	2 cut(s)	1087, 3139
Lsp1109I	GCAGC	9 cut(s)	117, 208, 211, 214, 527, 990, 1732, 3207, 3272
LweI	GCATC	8 cut(s)	423, 895, 1450, 2077, 2290, 2473, 2923, 3238
MaeI	CTAG	8 cut(s)	15, 42, 339, 2240, 2354, 2612, 2717, 3069
MaeII	ACGT	3 cut(s)	879, 1211, 2284
MaeIII	GTNAC	8 cut(s)	268, 988, 1093, 1343, 1513, 1575, 1723, 2475
MfeI	CAATTG	1 cut(s)	1719
MflI	RGATCY	2 cut(s)	2416, 2626
MhlI	GDGCHC	3 cut(s)	765, 2048, 2452
MlyI	GAGTC	1 cut(s)	1340
MmeI	TCCRAC	5 cut(s)	1140, 1224, 1739, 2104, 3109
Mph1103I	ATGCAT	4 cut(s)	568, 797, 1990, 2733
MroI	TCCGGA	1 cut(s)	1504
MroXI	GAANNNNTTC	1 cut(s)	2382
MslI	CAYNNNNRTG	3 cut(s)	1473, 1529, 2897
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	2 cut(s)	1505, 2057
MspR9I	CCNGG	2 cut(s)	2058, 2915
MunI	CAATTG	1 cut(s)	1719
Mva1269I	GAATGC	3 cut(s)	568, 1148, 1988
MvaI	CCWGG	1 cut(s)	2915
MwoI	GCNNNNNNNGC	7 cut(s)	199, 202, 524, 1298, 1364, 1418, 2447
NciI	CCSGG	1 cut(s)	2058
NdeI	CATATG	2 cut(s)	835, 3307
NlaIII	CATG	7 cut(s)	376, 1171, 1528, 1645, 1677, 2492, 3274
NlaIV	GGNNCC	1 cut(s)	874
NmeAIII	GCCGAG	2 cut(s)	690, 1685
NmuCI	GTSAC	3 cut(s)	268, 1343, 1723
NsbI	TGCGCA	1 cut(s)	542
NsiI	ATGCAT	4 cut(s)	568, 797, 1990, 2733
NspI	RCATGY	2 cut(s)	376, 1645
PaeR7I	CTCGAG	1 cut(s)	1386
PagI	TCATGA	1 cut(s)	1167
PaqCI	CACCTGC	1 cut(s)	196
PceI	AGGCCT	2 cut(s)	769, 2143
PctI	GAATGC	3 cut(s)	568, 1148, 1988
PdmI	GAANNNNTTC	1 cut(s)	2382
PfeI	GAWTC	8 cut(s)	346, 508, 1115, 1277, 1508, 2176, 2246, 2981
PflMI	CCANNNNNTGG	1 cut(s)	643
PleI	GAGTC	1 cut(s)	1340
PpsI	GAGTC	1 cut(s)	1340
Ppu21I	YACGTR	1 cut(s)	2285
PshBI	ATTAAT	2 cut(s)	3006, 3107
PsiI	TTATAA	3 cut(s)	1521, 2795, 3159
Psp6I	CCWGG	1 cut(s)	2913
PspGI	CCWGG	1 cut(s)	2913
PspN4I	GGNNCC	1 cut(s)	874
PspPI	GGNCC	2 cut(s)	872, 2681
PspXI	VCTCGAGB	1 cut(s)	1386
PstI	CTGCAG	1 cut(s)	3290
PsuI	RGATCY	2 cut(s)	2416, 2626
RsaI	GTAC	5 cut(s)	13, 804, 2281, 2674, 2888
RsaNI	GTAC	5 cut(s)	12, 803, 2280, 2673, 2887
RseI	CAYNNNNRTG	3 cut(s)	1473, 1529, 2897
Sau96I	GGNCC	2 cut(s)	872, 2681
ScaI	AGTACT	1 cut(s)	804
SchI	GAGTC	1 cut(s)	1340
ScrFI	CCNGG	2 cut(s)	2058, 2915
SduI	GDGCHC	3 cut(s)	765, 2048, 2452
SfaNI	GCATC	8 cut(s)	423, 895, 1450, 2077, 2290, 2473, 2923, 3238
SfcI	CTRYAG	3 cut(s)	1540, 2622, 3286
Sfr274I	CTCGAG	1 cut(s)	1386
SlaI	CTCGAG	1 cut(s)	1386
SmiMI	CAYNNNNRTG	3 cut(s)	1473, 1529, 2897
SmlI	CTYRAG	3 cut(s)	659, 671, 1386
SmoI	CTYRAG	3 cut(s)	659, 671, 1386
SpeI	ACTAGT	2 cut(s)	14, 41
SseBI	AGGCCT	2 cut(s)	769, 2143
SsiI	CCGC	6 cut(s)	194, 504, 1221, 1231, 3064, 3282
SspI	AATATT	2 cut(s)	1405, 2788
SspMI	CTAG	8 cut(s)	15, 42, 339, 2240, 2354, 2612, 2717, 3069
StuI	AGGCCT	2 cut(s)	769, 2143
StyD4I	CCNGG	2 cut(s)	2056, 2913
StyI	CCWWGG	1 cut(s)	3118
TaaI	ACNGT	7 cut(s)	274, 727, 895, 1042, 1493, 1909, 2369
TaiI	ACGT	3 cut(s)	882, 1214, 2287
TaqI	TCGA	4 cut(s)	511, 1387, 2269, 2376
TaqII	GACCGA	1 cut(s)	2208
TatI	WGTACW	4 cut(s)	11, 802, 2279, 2672
TauI	GCSGC	2 cut(s)	196, 3285
TfiI	GAWTC	8 cut(s)	346, 508, 1115, 1277, 1508, 2176, 2246, 2981
TscAI	CASTG	5 cut(s)	255, 361, 1498, 2407, 2515
TseFI	GTSAC	3 cut(s)	268, 1343, 1723
Tsp45I	GTSAC	3 cut(s)	268, 1343, 1723
TspGWI	ACGGA	1 cut(s)	3040
TspRI	CASTG	5 cut(s)	255, 361, 1498, 2407, 2515
Van91I	CCANNNNNTGG	1 cut(s)	643
Vha464I	CTTAAG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	2044
VspI	ATTAAT	2 cut(s)	3006, 3107
XapI	RAATTY	3 cut(s)	840, 1049, 2308
XceI	RCATGY	2 cut(s)	376, 1645
XhoI	CTCGAG	1 cut(s)	1386
XmiI	GTMKAC	4 cut(s)	462, 633, 2190, 3261
XmnI	GAANNNNTTC	1 cut(s)	2382
XspI	CTAG	8 cut(s)	15, 42, 339, 2240, 2354, 2612, 2717, 3069
ZrmI	AGTACT	1 cut(s)	804
Zsp2I	ATGCAT	4 cut(s)	568, 797, 1990, 2733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.