Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004528

Physical Location & Seq

Genomic Coordinates Forward (+)

585320 .. 586022

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACAAGCCTATATAAAAAGCACAACATACCTTGGGTTTATTCATCTTACATCAAACCCAATAATATATCTCAAATTACAATTTCATCAACCCATTTGTTCCAATTCCAAAGGTTCTCTAGTATGGAGAAGAAAATGATGGCTTTCTTTGGGTTGGTAATTACAGTCGTCCTCCTCAATGCATGTCCTGCAATCGGAGAGTGCTACGGTGAATTAGTTGAGTTGTTACCTTGTGCGACGTTCATTATGGGCCCTGGCATAGGGCAGCCCCCAGAAATGTGTTGCTCAGGTATGCAACACGTGGTTGCTGAAGCTGATACTATTGAGAAACGCAGGAGTATTTGCCAATGTTTGAAAGACAAAGCTGTTGGTGCTAGCGTTAAAGTCGACCCTGAAAAAATTAAGCACACTACTAAGGCGTGTGGCGTAAAAATTCCTATTCCTATTGATCCTAATGTCGACTGCAACACAATTCCGATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

162

Amino Acids

17.81

Weight (kDa)

8.36

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	60 - 146	3.8e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	68 - 155	1.3e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01200 FvH4_3g01230 FvH4_3g09850
rosa_chinensis	RchiOBHm_Chr5g0001761 RchiOBHm_Chr5g0015561
rosa_laevigata	RLG00000030969 RLG00000030970 RLG00000032208
rosa_multiflora	Rmu_sc0002886.1_g000025 Rmu_sc0008119.1_g000005 Rmu_sc0008119.1_g000007 Rmu_ssc0000237.1_g000015 Rmu_ssc0000237.1_g000017
rosa_roxburghii	Rroxscaffold_1G00071220 Rroxscaffold_1G00074560
rosa_rugosa	Rorug04G0392800 Rorug04G0392900 Rorug05G0028400
rosa_samantha	Rh5AG013900 Rh5AG014100 Rh5AG121700 Rh5BG017400 Rh5BG017500 Rh5BG120600 Rh5CG015000 Rh5CG015200 Rh5CG130900 Rh5DG015500 Rh5DG015600 Rh5DG119500
rosa_wichuraiana	Rw5G001360 Rw5G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	387, 459
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	330
AcvI	CACGTG	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	194, 260
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	314, 365
AluI	AGCT	2 cut(s)	314, 365
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	1 cut(s)	250
ApaI	GGGCCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	250, 251
AsuHPI	GGTGA	1 cut(s)	221
AsuNHI	GCTAGC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	2 cut(s)	120, 375
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	250, 251
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	255
BmtI	GCTAGC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	32, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 260
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	32, 253
BseLI	CCNNNNNNNGG	2 cut(s)	194, 260
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	194, 260
BsnI	GGCC	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	448
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	252
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	32, 253
BssMI	GATC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	166, 209
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	286, 414
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 371
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	250, 251
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	6 cut(s)	9, 143, 252, 268, 314, 365
CviKI_1	RGCY	6 cut(s)	9, 143, 252, 268, 314, 365
DdeI	CTNAG	2 cut(s)	286, 414
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	330
Eco72I	CACGTG	1 cut(s)	301
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	186
FaiI	YATR	9 cut(s)	13, 15, 29, 68, 125, 184, 248, 260, 293
FatI	CATG	1 cut(s)	182
FblI	GTMKAC	2 cut(s)	387, 459
Fnu4HI	GCNGC	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	2 cut(s)	120, 375
GluI	GCNGC	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	186
HincII	GTYRAC	2 cut(s)	388, 460
HindII	GTYRAC	2 cut(s)	388, 460
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	388, 460
Hpy188I	TCNGA	2 cut(s)	197, 477
Hpy8I	GTNNAC	2 cut(s)	388, 460
Hpy99I	CGWCG	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	166, 209
HpyCH4IV	ACGT	2 cut(s)	239, 300
HpyCH4V	TGCA	4 cut(s)	182, 191, 295, 465
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 371
HpyF3I	CTNAG	2 cut(s)	286, 414
HpySE526I	ACGT	2 cut(s)	239, 300
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	201, 240, 267, 273, 285, 319, 405
Lsp1109I	GCAGC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	120, 375
MaeII	ACGT	2 cut(s)	239, 300
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	8 cut(s)	75, 81, 104, 159, 212, 399, 432, 471
MnlI	CCTC	2 cut(s)	182, 185
Mph1103I	ATGCAT	1 cut(s)	184
MseI	TTAA	3 cut(s)	381, 402, 484
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	188, 371
NdeII	GATC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	267
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	253
PspCI	CACGTG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	252
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	250, 251
SalI	GTCGAC	2 cut(s)	386, 458
SaqAI	TTAA	3 cut(s)	381, 402, 484
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	250, 251
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	8 cut(s)	34, 116, 232, 242, 292, 303, 316, 367
Sse9I	AATT	8 cut(s)	75, 81, 104, 159, 212, 399, 432, 471
SspMI	CTAG	2 cut(s)	120, 375
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	166, 209
TaiI	ACGT	2 cut(s)	242, 303
TaqI	TCGA	2 cut(s)	387, 459
TasI	AATT	8 cut(s)	75, 81, 104, 159, 212, 399, 432, 471
Tru1I	TTAA	3 cut(s)	381, 402, 484
Tru9I	TTAA	3 cut(s)	381, 402, 484
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	33, 75, 232
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	432
XceI	RCATGY	1 cut(s)	186
XmiI	GTMKAC	2 cut(s)	387, 459
XspI	CTAG	2 cut(s)	120, 375
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.