FvH4_3g01230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004528
Physical Location & Seq
Forward (+)
600538 .. 601647
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01230.t1

Sequence Viewer

Length: 339 bp
ACGAGCCTTTATAAAAAACACAACATACCTTGGGTTTATTCATCTTACACCAAACCCAATATTATATCTCAAATTACAATTTCATCAACCTATTTGTTCCAATTCCAAAGGTTCTCTAGTATGAAGAAGAAAATGATGGCTTTCATTGGGTTGGTGATTACTGTCGTCGTCCTCAATGCATGTCCTGCAATCGGAGAGTGCTACAGTGAATTAGTCGAGCTGTTGCCTTGTGTGGGCCCTGGCACAAGGCAGCCCCAGAAACGTGTTGCTCAGGTATGCAGCACGTGGTTGCCGAAGCTGATACTACTGAGAAGCGCAGGAGTCTTTGCCAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.56

Weight (kDa)

9.74

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AcvI CACGTG 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 191, 233
AflIII ACRYGT 1 cut(s) 262
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 2 cut(s) 220, 298
AluI AGCT 2 cut(s) 220, 298
AoxI GGCC 1 cut(s) 235
ApaI GGGCCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 250, 279
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 235, 236
AsuHPI GGTGA 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 239
BbrPI CACGTG 1 cut(s) 285
BbvI GCAGC 2 cut(s) 262, 291
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 240
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 2 cut(s) 251, 280
BlsI GCNGC 2 cut(s) 252, 281
Bme1390I CCNGG 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 235, 236
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 29, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 233
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 29, 238
BseLI CCNNNNNNNGG 2 cut(s) 191, 233
BseMII CTCAG 2 cut(s) 284, 299
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 2 cut(s) 262, 291
BshFI GGCC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 191, 233
BsnI GGCC 1 cut(s) 237
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 239
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 2 cut(s) 283, 300
BspLI GGNNCC 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 29, 238
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 163, 206
BstAPI GCANNNNNTGC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 270, 308
BstHHI GCGC 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 262, 291
BsuRI GGCC 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 235, 236
CviAII CATG 1 cut(s) 180
CviJI RGCY 6 cut(s) 6, 140, 220, 237, 253, 298
CviKI_1 RGCY 6 cut(s) 6, 140, 220, 237, 253, 298
DdeI CTNAG 2 cut(s) 270, 308
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 183
FaiI YATR 6 cut(s) 12, 26, 65, 122, 181, 277
FatI CATG 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 251, 280
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 251, 280
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 316
GluI GCNGC 2 cut(s) 251, 280
HaeIII GGCC 1 cut(s) 237
HhaI GCGC 1 cut(s) 317
Hin1II CATG 1 cut(s) 183
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 1 cut(s) 321
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 163, 206
HpyCH4IV ACGT 2 cut(s) 262, 284
HpyCH4V TGCA 3 cut(s) 179, 188, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 270, 308
HpySE526I ACGT 2 cut(s) 262, 284
Hsp92II CATG 1 cut(s) 183
HspAI GCGC 1 cut(s) 315
LpnPI CCDG 6 cut(s) 198, 225, 252, 257, 269, 303
Lsp1109I GCAGC 2 cut(s) 262, 291
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 262, 284
MboII GAAGA 2 cut(s) 136, 139
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 4 cut(s) 72, 78, 101, 209
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 185
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PkrI GCNGC 2 cut(s) 252, 281
PleI GAGTC 1 cut(s) 329
PmaCI CACGTG 1 cut(s) 285
PmlI CACGTG 1 cut(s) 285
PpsI GAGTC 1 cut(s) 329
Ppu21I YACGTR 1 cut(s) 285
PsiI TTATAA 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 238
PspCI CACGTG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 237
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 235, 236
SatI GCNGC 2 cut(s) 251, 280
Sau96I GGNCC 2 cut(s) 235, 236
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 239
SetI ASST 8 cut(s) 31, 92, 113, 222, 265, 276, 287, 300
SfcI CTRYAG 1 cut(s) 202
Sse9I AATT 4 cut(s) 72, 78, 101, 209
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 163, 206
TaiI ACGT 2 cut(s) 265, 287
TaqI TCGA 1 cut(s) 216
TasI AATT 4 cut(s) 72, 78, 101, 209
TscAI CASTG 1 cut(s) 211
TseI GCWGC 2 cut(s) 250, 279
TspDTI ATGAA 4 cut(s) 30, 72, 133, 137
TspRI CASTG 1 cut(s) 211
XceI RCATGY 1 cut(s) 183
XspI CTAG 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.