RLG00000030969

Belongs to the plant LTP family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
971226 .. 971564
339 bp
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UTR
Exon/CDS
Intron
RLM00000030969

Sequence Viewer

Length: 339 bp
ATGATGACTTCCGCTGCGCTGGTGATTATGGTCGTTATCCTTAATGCATGTCCTGCAATGGGAGGATGCGACGAAGCCTTAGTCGAGTTGTTGCCCTGTGCCACGTTCGTGATGGGTCCTGCAGAAGGAACTCCCCCTCCTGCGTGTTGTGAAGGTATGCAGCATGTCGTTGGTGGAGCAGATACCGCTGAGAAGCGCAGGAGTCTTTGCCAATGTTTGAAAGACACAGCTGTTAAAAATGAGGTTAAAATCAAGCCTGAAAACATTAAGCATGCTGTTGATGCTTGTGGCGTTAAAATCCTTGTTCCTATTGATCCTAATATCGACTGCAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

11.71

Weight (kDa)

5.25

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 6 - 99 8.1e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 23 - 110 9.5e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 186
AclWI GGATC 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 59, 125
AgsI TTSAA 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 121, 153
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
AlwI GGATC 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 14, 160, 330
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AspLEI GCGC 2 cut(s) 19, 198
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 106
BfmI CTRYAG 2 cut(s) 120, 328
BisI GCNGC 3 cut(s) 15, 161, 331
BlsI GCNGC 3 cut(s) 16, 162, 332
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 2 cut(s) 56, 271
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 125
Bse3DI GCAATG 1 cut(s) 63
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 59, 125
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 59, 125
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 2 cut(s) 12, 186
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 2 cut(s) 124, 332
BspPI GGATC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 63
BssMI GATC 1 cut(s) 313
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 79, 189
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 71
BstHHI GCGC 2 cut(s) 19, 198
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 53, 185, 281
BstNSI RCATGY 3 cut(s) 51, 167, 275
BstSFI CTRYAG 2 cut(s) 120, 328
BstV1I GCAGC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 2 cut(s) 19, 198
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 3 cut(s) 48, 164, 272
CviJI RGCY 3 cut(s) 77, 230, 256
CviKI_1 RGCY 3 cut(s) 77, 230, 256
DdeI CTNAG 2 cut(s) 79, 189
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 49
FaeI CATG 3 cut(s) 51, 167, 275
FaiI YATR 5 cut(s) 29, 49, 158, 165, 273
FatI CATG 3 cut(s) 47, 163, 271
Fnu4HI GCNGC 3 cut(s) 15, 161, 331
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 3 cut(s) 15, 161, 331
GlaI GCGC 2 cut(s) 18, 197
GluI GCNGC 3 cut(s) 15, 161, 331
HhaI GCGC 2 cut(s) 19, 198
Hin1II CATG 3 cut(s) 51, 167, 275
Hin6I GCGC 2 cut(s) 17, 196
HinP1I GCGC 2 cut(s) 17, 196
HinfI GANTC 1 cut(s) 202
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 119, 146
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 5 cut(s) 47, 56, 122, 160, 330
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 185, 281
HpyF3I CTNAG 2 cut(s) 79, 189
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 3 cut(s) 51, 167, 275
HspAI GCGC 2 cut(s) 17, 196
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 5, 66, 109, 132, 153, 184, 270
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 56, 271
MaeII ACGT 1 cut(s) 104
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 3 cut(s) 56, 147, 235
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 5 cut(s) 42, 234, 246, 267, 294
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 3 cut(s) 14, 188, 230
MwoI GCNNNNNNNGC 3 cut(s) 53, 185, 281
NdeII GATC 1 cut(s) 313
NlaIII CATG 3 cut(s) 51, 167, 275
NlaIV GGNNCC 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 3 cut(s) 51, 167, 275
OliI CACNNNNGTG 1 cut(s) 107
PaeI GCATGC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 16, 162, 332
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 2 cut(s) 124, 332
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 5 cut(s) 42, 234, 246, 267, 294
SatI GCNGC 3 cut(s) 15, 161, 331
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 211
SetI ASST 4 cut(s) 107, 157, 232, 246
SfaNI GCATC 2 cut(s) 56, 271
SfcI CTRYAG 2 cut(s) 120, 328
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 107
SphI GCATGC 1 cut(s) 275
SsiI CCGC 2 cut(s) 12, 186
TaiI ACGT 1 cut(s) 107
TaqI TCGA 2 cut(s) 84, 324
Tru1I TTAA 5 cut(s) 42, 234, 246, 267, 294
Tru9I TTAA 5 cut(s) 42, 234, 246, 267, 294
TseI GCWGC 3 cut(s) 14, 160, 330
VpaK11BI GGWCC 1 cut(s) 116
XagI CCTNNNNNAGG 1 cut(s) 123
XceI RCATGY 3 cut(s) 51, 167, 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.