Rh5AG121700

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004528
Physical Location & Seq
Forward (+)
11364733 .. 11365416
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG121700.1

Sequence Viewer

Length: 390 bp
ATGGCTAGTATGGAGAAGAAAATGATGACTTTCGCTGGGCTGGTGATTATGGTCGTCGTCCTCAATGTATGTCCTGCAATTGGAGGGTGCGACGCAGAATTAGTGAAGTTGTTGCCCTGTGCCACGTTCTTTATGGGCCCTGCCGTAGGGAAGGCCCCTCCTGAGTGCTGTGAAGGCGTAAAAAATGTGCTTGATGGAGCTGATACCAATGAGAAGCGCAGGAGTCTCTGCCAATGTTTGAAAGACACAGCTATTGGTGCTGAAGTTAAACTCACCCCTGAAAAACTTAAGAACGTTACTGACCCTTGTGGCGTTAATGATCCCAATTTCGACTGCAACACAATTCCGGTGTTTGAATGGGATCAAATAGAACTTGGAGAAGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

129

Amino Acids

13.9

Weight (kDa)

4.51

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 26 - 112 1.7e-06 Probable lipid transfer
Tryp_alpha_amyl PF00234 30 - 112 1.3e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 294
AclWI GGATC 2 cut(s) 314, 369
AcuI CTGAAG 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 80, 146
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 241, 356
AluBI AGCT 2 cut(s) 200, 251
AluI AGCT 2 cut(s) 200, 251
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 2 cut(s) 314, 369
AoxI GGCC 2 cut(s) 136, 153
ApaI GGGCCC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 136, 137, 154
AsuHPI GGTGA 2 cut(s) 55, 265
BaeGI GKGCMC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 140
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 287
BmgT120I GGNCC 3 cut(s) 136, 137, 154
BmiI GGNNCC 2 cut(s) 138, 156
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 146
BseLI CCNNNNNNNGG 2 cut(s) 80, 146
BseMII CTCAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 35
BshFI GGCC 2 cut(s) 138, 155
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 80, 146
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 2 cut(s) 138, 155
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 319, 361
BspANI GGCC 2 cut(s) 138, 155
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 138, 156
BspPI GGATC 2 cut(s) 314, 369
BspTI CTTAAG 1 cut(s) 287
BssMI GATC 2 cut(s) 319, 361
BstAFI CTTAAG 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 2 cut(s) 322, 364
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 319, 361
BstMWI GCNNNNNNNGC 2 cut(s) 174, 257
BstSLI GKGCMC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 138, 155
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 3 cut(s) 136, 137, 154
CseI GACGC 1 cut(s) 101
CviJI RGCY 6 cut(s) 5, 40, 138, 155, 200, 251
CviKI_1 RGCY 6 cut(s) 5, 40, 138, 155, 200, 251
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 321, 363
DpnII GATC 2 cut(s) 319, 361
Eco24I GRGCYC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 282
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO109I RGGNCCY 2 cut(s) 137, 154
EcoT38I GRGCYC 1 cut(s) 140
FaiI YATR 4 cut(s) 11, 50, 70, 134
FriOI GRGCYC 1 cut(s) 140
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 218
GsaI CCCAGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 138, 155
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 219
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 347
HphI GGTGA 2 cut(s) 55, 265
Hpy188III TCNNGA 1 cut(s) 161
Hpy99I CGWCG 2 cut(s) 59, 95
HpyAV CCTTC 2 cut(s) 145, 167
HpyCH4IV ACGT 2 cut(s) 125, 294
HpyCH4V TGCA 2 cut(s) 77, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 257
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 125, 294
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 319, 361
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 21, 26, 87, 130, 153, 174, 205, 291, 360
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 125, 294
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 321, 363
MboI GATC 2 cut(s) 319, 361
MboII GAAGA 1 cut(s) 28
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 4 cut(s) 78, 98, 325, 342
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 3 cut(s) 71, 77, 168
MseI TTAA 3 cut(s) 267, 288, 315
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 174, 257
NdeII GATC 2 cut(s) 319, 361
NlaIV GGNNCC 2 cut(s) 138, 156
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 138, 156
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 3 cut(s) 136, 137, 154
SaqAI TTAA 3 cut(s) 267, 288, 315
Sau3AI GATC 2 cut(s) 319, 361
Sau96I GGNCC 3 cut(s) 136, 137, 154
SchI GAGTC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 140
SetI ASST 4 cut(s) 128, 202, 253, 297
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 4 cut(s) 78, 98, 325, 342
SspMI CTAG 1 cut(s) 6
TaiI ACGT 2 cut(s) 128, 297
TaqI TCGA 1 cut(s) 330
TasI AATT 4 cut(s) 78, 98, 325, 342
Tru1I TTAA 3 cut(s) 267, 288, 315
Tru9I TTAA 3 cut(s) 267, 288, 315
Vha464I CTTAAG 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.