Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004528

Physical Location & Seq

Genomic Coordinates Forward (+)

12071488 .. 12072003

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGAAGAAAATGATGGCTTTCGCTGGGCTGGTGATTATGGTCGTCATTCTCAATGCATGTCCTGCAATTGGAGGGTGCGACGCAGAATTAGTCAAGTTGTTGCCCTGTGCCACGTTCGTTATGGGCCCTGCCGCAGGGAAGGCCCCTCCTGAGTGCTGTGAAGGTGTGAAAAATGTGCTTGATGGAGCTGACACCGATGAGAAGCGCAGGAGTCTTTGCCAATGTTTGAAAGACACAGCTATTGGTGCTGAAGTCGAAATCACCCCTGGAAAACTTAAGAACGTTACTGACCCTTGTGACGTCAAAGTTCCTATTCCTATTGATGCCAATTTCGACTGCAAAACAATTCCGGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

121

Amino Acids

12.65

Weight (kDa)

4.9

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 105	4.7e-07	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 114	2.3e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01200 FvH4_3g01230 FvH4_3g09850
rosa_chinensis	RchiOBHm_Chr5g0001761 RchiOBHm_Chr5g0015561
rosa_laevigata	RLG00000030969 RLG00000030970 RLG00000032208
rosa_multiflora	Rmu_sc0002886.1_g000025 Rmu_sc0008119.1_g000005 Rmu_sc0008119.1_g000007 Rmu_ssc0000237.1_g000015 Rmu_ssc0000237.1_g000017
rosa_roxburghii	Rroxscaffold_1G00071220 Rroxscaffold_1G00074560
rosa_rugosa	Rorug04G0392800 Rorug04G0392900 Rorug05G0028400
rosa_samantha	Rh5AG013900 Rh5AG014100 Rh5AG121700 Rh5BG017400 Rh5BG017500 Rh5BG120600 Rh5CG015000 Rh5CG015200 Rh5CG130900 Rh5DG015500 Rh5DG015600 Rh5DG119500
rosa_wichuraiana	Rw5G001360 Rw5G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AciI	CCGC	1 cut(s)	135
AclI	AACGTT	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	71, 137
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	191, 242
AluI	AGCT	2 cut(s)	191, 242
AoxI	GGCC	2 cut(s)	127, 144
ApaI	GGGCCC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	127, 128, 145
AsuHPI	GGTGA	2 cut(s)	46, 256
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	131
BccI	CCATC	2 cut(s)	10, 179
BciT130I	CCWGG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	270
BmgT120I	GGNCC	3 cut(s)	127, 128, 145
BmiI	GGNNCC	2 cut(s)	129, 147
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 137
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	71, 137
BseMII	CTCAG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	129, 146
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	71, 137
BsnI	GGCC	2 cut(s)	129, 146
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	129, 146
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	129, 147
BspTI	CTTAAG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 143, 248
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	129, 146
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	127, 128, 145
CseI	GACGC	1 cut(s)	92
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	6 cut(s)	20, 31, 129, 146, 191, 242
CviKI_1	RGCY	6 cut(s)	20, 31, 129, 146, 191, 242
DdeI	CTNAG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	2 cut(s)	128, 145
EcoRII	CCWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	1 cut(s)	63
FaiI	YATR	3 cut(s)	41, 61, 125
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	129, 146
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	46, 256
Hpy188III	TCNNGA	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	136, 158
HpyCH4IV	ACGT	3 cut(s)	116, 285, 303
HpyCH4V	TGCA	3 cut(s)	59, 68, 342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 143, 248
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	3 cut(s)	116, 285, 303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	188
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	3 cut(s)	116, 285, 303
MaeIII	GTNAC	2 cut(s)	286, 299
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	4 cut(s)	69, 89, 331, 348
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	68, 159
Mph1103I	ATGCAT	1 cut(s)	61
MseI	TTAA	2 cut(s)	279, 361
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	65, 143, 248
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	2 cut(s)	129, 147
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	61
NspI	RCATGY	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp1406I	AACGTT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	129, 147
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	127, 128, 145
SaqAI	TTAA	2 cut(s)	279, 361
SatI	GCNGC	1 cut(s)	135
Sau96I	GGNCC	3 cut(s)	127, 128, 145
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	119, 169, 193, 244, 288, 306
SfaNI	GCATC	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	4 cut(s)	69, 89, 331, 348
SsiI	CCGC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	3 cut(s)	119, 288, 306
TaqI	TCGA	2 cut(s)	258, 336
TasI	AATT	4 cut(s)	69, 89, 331, 348
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	279, 361
Tru9I	TTAA	2 cut(s)	279, 361
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	278
XagI	CCTNNNNNAGG	1 cut(s)	135
XceI	RCATGY	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
ZraI	GACGTC	1 cut(s)	304
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.