Rorug04G0392800

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004528
Physical Location & Seq
Forward (+)
55952030 .. 55952608
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0392800.1

Sequence Viewer

Length: 579 bp
ATGGCTGCTGTAATCGAAGCAAACAACCCAAAAGCGACAATGGACAGCAAAGAGGAAGTGGGATTCACTTACTACTATTCCGCTTTCTTACCCGAAAGCCGCGCATCGGAGTTGCAAGTAGCTTGGCCGGAGCTGCTACCGGCTTTCAAGAAGTGCGGTGTTTCTTCATTGTCACTGAATCTGACCGAGTCTGTCTTGAAAGCTTCAATAACAAGATTTCATTGCCAAGATTACAGGGCTTCTCATCTTCTTGAACTTTTGGCAACGACTACTGTGCCCCCATCTCTGGCGATAGAACTCGCTCTCAACGACGTGATTGCATACGATCTCATCAAGATAGGGTTACAAGAAGATGGATTTGCTTGGGAATATGGGATCGACAAGAAGCGATTTTCCGAACGCCGTGAACGTCTGAAGAAGCACTACTTGGAGGCACTTGAATTTGCTACCGACTGTCATCTTTATCTTGGAGCACACACTGTCACTGCTGTGGCTACTGATTCTGGTTGGCCTGCGTCACTTGGGTTAAACACGGTCAGGAAGTTGGTGGAACAGTGCATACGCTATGGACCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

192

Amino Acids

21.48

Weight (kDa)

5.58

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 127 - 188 3.3e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 81, 100, 156
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 106, 286
AgsI TTSAA 5 cut(s) 148, 199, 207, 254, 440
AjiI CACGTC 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 3 cut(s) 122, 133, 203
AluI AGCT 3 cut(s) 122, 133, 203
Alw21I GWGCWC 1 cut(s) 475
AlwI GGATC 1 cut(s) 383
AoxI GGCC 2 cut(s) 125, 509
ApeKI GCWGC 2 cut(s) 5, 133
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 569
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 279
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 289, 347
BceAI ACGGC 1 cut(s) 387
BcgI CGANNNNNNTGC 4 cut(s) 256, 290, 299, 333
BisI GCNGC 3 cut(s) 6, 100, 134
BlsI GCNGC 3 cut(s) 7, 101, 135
Bme18I GGWCC 1 cut(s) 569
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 569
BmsI GCATC 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 286
Bse118I RCCGGY 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 106, 286
BseMI GCAATG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 127, 511
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 3 cut(s) 128, 140, 572
BslI CCNNNNNNNGG 2 cut(s) 106, 286
BsnI GGCC 2 cut(s) 127, 511
Bsp1286I GDGCHC 2 cut(s) 279, 475
Bsp143I GATC 2 cut(s) 325, 375
BspACI CCGC 3 cut(s) 81, 100, 156
BspANI GGCC 2 cut(s) 127, 511
BspFNI CGCG 1 cut(s) 102
BspPI GGATC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssMI GATC 2 cut(s) 325, 375
Bst4CI ACNGT 5 cut(s) 274, 455, 481, 535, 555
BstC8I GCNNGC 1 cut(s) 513
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 328, 378
BstMBI GATC 2 cut(s) 325, 375
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 2 cut(s) 127, 511
BtrI CACGTC 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 4 cut(s) 173, 477, 483, 560
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 569
CseI GACGC 1 cut(s) 504
DpnI GATC 2 cut(s) 327, 377
DpnII GATC 2 cut(s) 325, 375
EaeI YGGCCR 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 434
FaiI YATR 4 cut(s) 322, 372, 560, 567
FalI AAGNNNNNCTT 2 cut(s) 410, 442
Fnu4HI GCNGC 3 cut(s) 6, 100, 134
Fsp4HI GCNGC 3 cut(s) 6, 100, 134
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 6, 100, 134
HaeIII GGCC 2 cut(s) 127, 511
HapII CCGG 3 cut(s) 128, 140, 572
HgaI GACGC 1 cut(s) 504
HhaI GCGC 1 cut(s) 104
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 4 cut(s) 63, 178, 188, 500
HpaII CCGG 3 cut(s) 128, 140, 572
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 4 cut(s) 109, 183, 397, 414
Hpy188III TCNNGA 5 cut(s) 148, 196, 251, 334, 538
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 5 cut(s) 274, 455, 481, 535, 555
HpyCH4IV ACGT 2 cut(s) 312, 409
HpyCH4V TGCA 3 cut(s) 115, 320, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpySE526I ACGT 2 cut(s) 312, 409
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 325, 375
LmnI GCTCC 2 cut(s) 130, 470
LpnPI CCDG 7 cut(s) 141, 153, 220, 272, 489, 523, 525
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 113
MaeII ACGT 2 cut(s) 312, 409
MaeIII GTNAC 4 cut(s) 171, 342, 481, 516
MalI GATC 2 cut(s) 327, 377
MboI GATC 2 cut(s) 325, 375
MboII GAAGA 4 cut(s) 156, 239, 362, 427
MhlI GDGCHC 2 cut(s) 279, 475
MluCI AATT 1 cut(s) 440
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 2 cut(s) 46, 424
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 3 cut(s) 128, 140, 572
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 2 cut(s) 325, 375
NmuCI GTSAC 3 cut(s) 171, 481, 516
OliI CACNNNNGTG 1 cut(s) 488
PcsI WCGNNNNNNNCGW 2 cut(s) 306, 406
PfeI GAWTC 3 cut(s) 63, 178, 500
PflFI GACNNNGTC 1 cut(s) 187
PkrI GCNGC 3 cut(s) 7, 101, 135
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 569
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PsyI GACNNNGTC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 3 cut(s) 6, 100, 134
Sau3AI GATC 2 cut(s) 325, 375
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 2 cut(s) 279, 475
SetI ASST 5 cut(s) 124, 135, 205, 315, 412
SfaNI GCATC 1 cut(s) 113
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 1 cut(s) 440
SsiI CCGC 3 cut(s) 81, 100, 156
TaaI ACNGT 5 cut(s) 274, 455, 481, 535, 555
TaiI ACGT 2 cut(s) 315, 412
TaqI TCGA 2 cut(s) 15, 378
TaqII GACCGA 1 cut(s) 200
TasI AATT 1 cut(s) 440
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 3 cut(s) 63, 178, 500
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 4 cut(s) 180, 484, 490, 560
TseFI GTSAC 3 cut(s) 171, 481, 516
TseI GCWGC 2 cut(s) 5, 133
Tsp45I GTSAC 3 cut(s) 171, 481, 516
TspDTI ATGAA 2 cut(s) 156, 209
TspRI CASTG 4 cut(s) 180, 484, 490, 560
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.