Rh5BG120600

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004528
Physical Location & Seq
Forward (+)
11409437 .. 11410135
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG120600.1

Sequence Viewer

Length: 396 bp
ATGGAGAAGAAAATGATGACTTTCGCTGGGCTGGTGATTATGGTCGTCGTCCTCAATGTATGTCCTGCAATTGGACGGTGCGACGCAGAATTAGTGAAGTTGTTGCCCTGTGCCACGTTCGTTATGGGCCCTGCCGTAGGGAAGGCCCCTCCTGAGTGCTGTGAAGGTGTAAAAAATGTGCTTGATGGAGCTGATACCAATGAGAAGCGCAGGAGTCTTTGCCAATGTTTGAAAGACACAGCTATTGGTGCTGAAGTTAAAATCATCCCTGAAAAACTTAAGAACGTTACTGACCCTTGTGGCGTCAAAGTTTCTATTCCTAATGATCCCAATTTCGACTGCAACACAATTCCGGTGTTTGAAAGGGATCAAATAGAACTTGGAGAAGAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

131

Amino Acids

14.21

Weight (kDa)

4.89

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 22 - 105 5.5e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 27 - 114 1.4e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 285
AclWI GGATC 2 cut(s) 320, 375
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 71, 137
AflII CTTAAG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 232, 362
AluBI AGCT 2 cut(s) 191, 242
AluI AGCT 2 cut(s) 191, 242
AlwI GGATC 2 cut(s) 320, 375
AoxI GGCC 2 cut(s) 127, 144
ApaI GGGCCC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 3 cut(s) 127, 128, 145
AsuHPI GGTGA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 131
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 127, 128, 145
BmiI GGNNCC 2 cut(s) 129, 147
BsaHI GRCGYC 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 137
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 71, 137
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 129, 146
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 71, 137
BsnI GGCC 2 cut(s) 129, 146
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 325, 367
BspANI GGCC 2 cut(s) 129, 146
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 129, 147
BspPI GGATC 2 cut(s) 320, 375
BspTI CTTAAG 1 cut(s) 278
BssMI GATC 2 cut(s) 325, 367
BssNI GRCGYC 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 303
BstAFI CTTAAG 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 153
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 328, 370
BstMBI GATC 2 cut(s) 325, 367
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSLI GKGCMC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 129, 146
BtsCI GGATG 1 cut(s) 264
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 127, 128, 145
CseI GACGC 2 cut(s) 92, 292
CviJI RGCY 5 cut(s) 31, 129, 146, 191, 242
CviKI_1 RGCY 5 cut(s) 31, 129, 146, 191, 242
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 327, 369
DpnII GATC 2 cut(s) 325, 367
Eco24I GRGCYC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 2 cut(s) 128, 145
EcoT38I GRGCYC 1 cut(s) 131
FaiI YATR 3 cut(s) 41, 61, 125
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 131
GlaI GCGC 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 129, 146
HapII CCGG 1 cut(s) 353
HgaI GACGC 2 cut(s) 92, 292
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 353
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 2 cut(s) 50, 86
HpyAV CCTTC 2 cut(s) 136, 158
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 2 cut(s) 116, 285
HpyCH4V TGCA 2 cut(s) 68, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 116, 285
Hsp92I GRCGYC 1 cut(s) 303
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 325, 367
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 9 cut(s) 12, 17, 78, 121, 144, 165, 196, 282, 366
MaeII ACGT 2 cut(s) 116, 285
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 327, 369
MboI GATC 2 cut(s) 325, 367
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 4 cut(s) 69, 89, 331, 348
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 2 cut(s) 62, 159
MseI TTAA 2 cut(s) 258, 279
MspCI CTTAAG 1 cut(s) 278
MspI CCGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 2 cut(s) 325, 367
NlaIV GGNNCC 2 cut(s) 129, 147
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 129, 147
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 3 cut(s) 127, 128, 145
SaqAI TTAA 2 cut(s) 258, 279
Sau3AI GATC 2 cut(s) 325, 367
Sau96I GGNCC 3 cut(s) 127, 128, 145
SchI GAGTC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 119, 169, 193, 244, 288
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 4 cut(s) 69, 89, 331, 348
SspI AATATT 1 cut(s) 392
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 2 cut(s) 119, 288
TaqI TCGA 1 cut(s) 336
TasI AATT 4 cut(s) 69, 89, 331, 348
Tru1I TTAA 2 cut(s) 258, 279
Tru9I TTAA 2 cut(s) 258, 279
Vha464I CTTAAG 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.