Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008119.1

Orthogroup ID

OG0004528

Physical Location & Seq

Genomic Coordinates Forward (+)

24634 .. 24972

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008119.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgatgactttcgctgggttggtgattatggtcgtcgtcctcaatgcatgtcctgcaattggagggtgcgacgaagccttagtggagttgttgccctgtgccacgttcgtgttgggccctggcataggggagcccccttctctgtgctgtgcaggtttaaagcatgtggttgctggagctgataccagtgagaagcgcaggagtctttgccaatgtttgaaagacaaagctgttggtgctggcgttaaagtcgaccctgaaaaacttaagcacgttactgacgcttgtggcgtcaaaattcctattcctgttgatcccaatgtcgactgcagcacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

112

Amino Acids

11.49

Weight (kDa)

5.56

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01200 FvH4_3g01230 FvH4_3g09850
rosa_chinensis	RchiOBHm_Chr5g0001761 RchiOBHm_Chr5g0015561
rosa_laevigata	RLG00000030969 RLG00000030970 RLG00000032208
rosa_multiflora	Rmu_sc0002886.1_g000025 Rmu_sc0008119.1_g000005 Rmu_sc0008119.1_g000007 Rmu_ssc0000237.1_g000015 Rmu_ssc0000237.1_g000017
rosa_roxburghii	Rroxscaffold_1G00071220 Rroxscaffold_1G00074560
rosa_rugosa	Rorug04G0392800 Rorug04G0392900 Rorug05G0028400
rosa_samantha	Rh5AG013900 Rh5AG014100 Rh5AG121700 Rh5BG017400 Rh5BG017500 Rh5BG120600 Rh5CG015000 Rh5CG015200 Rh5CG130900 Rh5DG015500 Rh5DG015600 Rh5DG119500
rosa_wichuraiana	Rw5G001360 Rw5G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccI	GTMKAC	2 cut(s)	252, 324
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	59, 125
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	179, 230
AluI	AGCT	2 cut(s)	179, 230
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	115
ApaI	GGGCCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	115, 116
AsuHPI	GGTGA	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	119, 135
BciT130I	CCWGG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	115, 116
BmiI	GGNNCC	2 cut(s)	117, 132
BmrFI	CCNGG	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 125
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	59, 125
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	119
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	59, 125
BsnI	GGCC	1 cut(s)	117
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	119, 135
Bsp143I	GATC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	117, 132
BspMAI	CTGCAG	1 cut(s)	332
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 236
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	2 cut(s)	51, 167
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	115, 116
CseI	GACGC	2 cut(s)	280, 290
CviAII	CATG	2 cut(s)	48, 164
CviJI	RGCY	5 cut(s)	77, 117, 133, 179, 230
CviKI_1	RGCY	5 cut(s)	77, 117, 133, 179, 230
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DraI	TTTAAA	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	119, 135
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	49
EcoT38I	GRGCYC	2 cut(s)	119, 135
FaeI	CATG	2 cut(s)	51, 167
FaiI	YATR	4 cut(s)	29, 49, 125, 165
FatI	CATG	2 cut(s)	47, 163
FblI	GTMKAC	2 cut(s)	252, 324
Fnu4HI	GCNGC	1 cut(s)	331
FriOI	GRGCYC	2 cut(s)	119, 135
Fsp4HI	GCNGC	1 cut(s)	331
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	117
HgaI	GACGC	2 cut(s)	280, 290
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	51, 167
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	2 cut(s)	253, 325
HindII	GTYRAC	2 cut(s)	253, 325
HinfI	GANTC	1 cut(s)	202
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	253, 325
Hpy8I	GTNNAC	2 cut(s)	253, 325
Hpy99I	CGWCG	2 cut(s)	38, 74
HpyAV	CCTTC	1 cut(s)	147
HpyCH4IV	ACGT	3 cut(s)	104, 273, 335
HpyCH4V	TGCA	4 cut(s)	47, 56, 152, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 236
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	3 cut(s)	104, 273, 335
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	51, 167
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	130, 176
MaeII	ACGT	3 cut(s)	104, 273, 335
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	119, 135
MluCI	AATT	2 cut(s)	57, 297
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	50, 56
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	3 cut(s)	158, 246, 267
MslI	CAYNNNNRTG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	53, 236
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	51, 167
NlaIV	GGNNCC	2 cut(s)	117, 132
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	2 cut(s)	51, 167
OliI	CACNNNNGTG	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	117, 132
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	115, 116
PstI	CTGCAG	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	107
SalI	GTCGAC	2 cut(s)	251, 323
SaqAI	TTAA	3 cut(s)	158, 246, 267
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	115, 116
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	2 cut(s)	119, 135
SetI	ASST	6 cut(s)	107, 157, 181, 232, 276, 338
SfcI	CTRYAG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	57, 297
StyD4I	CCNGG	1 cut(s)	118
TaiI	ACGT	3 cut(s)	107, 276, 338
TaqI	TCGA	2 cut(s)	252, 324
TasI	AATT	2 cut(s)	57, 297
Tru1I	TTAA	3 cut(s)	158, 246, 267
Tru9I	TTAA	3 cut(s)	158, 246, 267
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	330
TspRI	CASTG	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	2 cut(s)	51, 167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	252, 324
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.