Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004528

Physical Location & Seq

Genomic Coordinates Forward (+)

5739507 .. 5740429

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGAAGAAAATGATGGTTATCGCTGGACTGGTGACTATGGTCGTCGTCCTCAATGTATGTCCTGCAAATGGAAGGTGTGACGCAGAGATAACGGAGATGTTGCCCTGCGGCTCGTTCATTATGGGCCCTGCCATAGGGAAACCCCCTCCGGAGTGTTGTGAAGGTGTAAAGAAGGTGCTTGATGGAGCTAATAACGAAGCGAAGCGCAGGAGTCTTTGCCAATGTTTGAAAGATGAAGCTATTGGTGCTGGTCTAAGAATCATCCCCGGAAAACTTAAGAACATTACTGGACCTTGTGAGATCAAACTTCCAATTCCTAAAAGTCCCAATGTCGACTGCAAGAAAATTCCGGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

121

Amino Acids

12.81

Weight (kDa)

8.76

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 103	6e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 114	1.3e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01200 FvH4_3g01230 FvH4_3g09850
rosa_chinensis	RchiOBHm_Chr5g0001761 RchiOBHm_Chr5g0015561
rosa_laevigata	RLG00000030969 RLG00000030970 RLG00000032208
rosa_multiflora	Rmu_sc0002886.1_g000025 Rmu_sc0008119.1_g000005 Rmu_sc0008119.1_g000007 Rmu_ssc0000237.1_g000015 Rmu_ssc0000237.1_g000017
rosa_roxburghii	Rroxscaffold_1G00071220 Rroxscaffold_1G00074560
rosa_rugosa	Rorug04G0392800 Rorug04G0392900 Rorug05G0028400
rosa_samantha	Rh5AG013900 Rh5AG014100 Rh5AG121700 Rh5BG017400 Rh5BG017500 Rh5BG120600 Rh5CG015000 Rh5CG015200 Rh5CG130900 Rh5DG015500 Rh5DG015600 Rh5DG119500
rosa_wichuraiana	Rw5G001360 Rw5G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	71, 137
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	2 cut(s)	191, 242
AluI	AGCT	2 cut(s)	191, 242
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	1 cut(s)	127
ApaI	GGGCCC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	127, 128, 293
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	131
BccI	CCATC	2 cut(s)	10, 179
BcnI	CCSGG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	127, 128, 293
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	270
BoxI	GACNNNNGTC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	2 cut(s)	151, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 137
Bse1I	ACTGG	2 cut(s)	36, 295
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	71, 137
BseNI	ACTGG	2 cut(s)	36, 295
BseSI	GKGCMC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	152, 270, 353
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	71, 137
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	129
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	36, 295
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	264
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	127, 128, 293
CseI	GACGC	1 cut(s)	92
CviJI	RGCY	4 cut(s)	114, 129, 191, 242
CviKI_1	RGCY	4 cut(s)	114, 129, 191, 242
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	131
FaiI	YATR	4 cut(s)	41, 61, 125, 137
FaqI	GGGAC	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	112
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	3 cut(s)	152, 270, 353
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	214, 261
HpaII	CCGG	3 cut(s)	152, 270, 353
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	69, 158, 169
HpyCH4V	TGCA	2 cut(s)	68, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	34, 80
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	315, 348
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	62, 159
MroI	TCCGGA	1 cut(s)	151
MseI	TTAA	2 cut(s)	279, 361
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	3 cut(s)	152, 270, 353
MspR9I	CCNGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	303
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	34, 80
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PshAI	GACNNNNGTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	129
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	127, 128, 293
SalI	GTCGAC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	279, 361
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	3 cut(s)	127, 128, 293
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	80, 169, 180, 193, 244, 298
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	315, 348
SsiI	CCGC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	268
TaqI	TCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	315, 348
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	2 cut(s)	279, 361
Tru9I	TTAA	2 cut(s)	279, 361
TseFI	GTSAC	2 cut(s)	34, 80
Tsp45I	GTSAC	2 cut(s)	34, 80
TspDTI	ATGAA	2 cut(s)	109, 252
TspGWI	ACGGA	1 cut(s)	110
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	293
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.