Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001019

Physical Location & Seq

Genomic Coordinates Forward (+)

1576006 .. 1578248

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGATAATGTGTGTTCCATGGGCTGCTGCTATGGAGGTCTCCATATCCGTGCTACTCGTGATCTTCGCATTACTACCATGTGCTTCAATATCTCTTTGGAGAGACTGGTAACTCAAATGTTTGAATTGGGGATGCCTTTGGTAGAATCTACTGTCTGGTCGGTTCTTATCAGGGAAGCCCTGTCAGCATTGAATAGGAGTGGAGGACAAAAGCTGAAACGGGGACTATGTAATGATGATTCACAGATTGTCAAGAGCCGCCTGCGCATTCCTGTCAAGGGCCGGATACAGCTGGTTCTAAGTAATCCTGAAAAGACACCGATTCATACTTTCCTTTGCAACTATGATTTAAGAGACATGCCGGCTGGTACCAAAACCTTCTTGCGCCAGAAGGTGACGTTAGCGTCTACCCCGACGTCCACTCAGCTGAGACATGAGGAGACAGATATTGATTCGAAAGTCATAGACACAAGAGTACAGAAAGCAGCTGCAGTAGAGTATACAACAAGATCACTAGCTCAGAGAACTGAATTTAAAAGTGAATGCTCCAATTTGATAGATTTAATAGTTGAGGGTGATATGTCCAAGCTATCCCCTAAAACAGAAAGGGTAGGAATTCCTTGTTTCGTGGGGGTTGAGAAGAGGTTCAATGGTGGTAAGGAGTGCCTGTGCAATGATGACAAGGACCACAACTGGGTTGATGCACGCCATGAAACTGACAGGAAACAAGCGGTCAGTTCAGAGATGCAAATCAGATCCCTTGTGTGGAATACAAAGAAGAAACTTAGATATGGAAGGGGAGCGGAGATTCTCTACAATGACTTGAGGGTTGTATTCCCTCAGTGCCAGTCAGATGCTGATGAGGGCAAGTTAAACGTGGAATACCATTTCCCAGAGGATCCAAAATACTTCGACATCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromosome_seg DUF4210

Protein Analysis

308

Amino Acids

34.97

Weight (kDa)

8.24

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chromosome_seg	PF13889	271 - 306	9.7e-12	Chromosome segregation during meiosis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT5G41110 AT5G41110 AT5G41110
fragaria_vesca	FvH4_3g02970 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_6g54040 FvH4_6g54040 FvH4_6g54040
malus_domestica	MD06G1134000.v1.1 MD09G1006000.v1.1 MD14G1150300.v1.1 MD17G1010000.v1.1
prunus_persica	Prupe.3G311000_v2.0.a1 Prupe.3G311000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1
pyrus_communis	pycom03g07800 pycom06g12520 pycom111g00440 pycom14g12490 pycom17g00450
rosa_chinensis	RchiOBHm_Chr2g0176221 RchiOBHm_Chr7g0189131
rosa_laevigata	RLG00000004630 RLG00000022392
rosa_multiflora	Rmu_co8469623.1_g000001 Rmu_sc0000405.1_g000014 Rmu_sc0007859.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076670 Rroxscaffold_3G00265760
rosa_rugosa	Rorug02G0591900 Rorug02G0591900 Rorug02G0592000 Rorug06G0496100
rosa_samantha	Rh1DG179700 Rh2AG670500 Rh2BG682000 Rh2CG644800 Rh2DG695600 Rh7AG100900 Rh7BG103500 Rh7CG104900 Rh7DG102800
rosa_wichuraiana	Rw2G055000 Rw7G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AatII	GACGTC	1 cut(s)	419
Acc16I	TGCGCA	1 cut(s)	266
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	803
AccI	GTMKAC	2 cut(s)	407, 500
AciI	CCGC	3 cut(s)	259, 731, 803
AclWI	GGATC	3 cut(s)	750, 893, 906
AcsI	RAATTY	2 cut(s)	530, 615
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	2 cut(s)	370, 477
AfiI	CCNNNNNNNGG	3 cut(s)	278, 694, 765
AgsI	TTSAA	4 cut(s)	88, 125, 193, 649
AluBI	AGCT	6 cut(s)	214, 292, 427, 488, 518, 589
AluI	AGCT	6 cut(s)	214, 292, 427, 488, 518, 589
Alw26I	GTCTC	5 cut(s)	44, 97, 348, 424, 434
AlwI	GGATC	3 cut(s)	750, 893, 906
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	4 cut(s)	24, 27, 485, 488
ApoI	RAATTY	2 cut(s)	530, 615
Asp700I	GAANNNNTTC	1 cut(s)	644
Asp718I	GGTACC	1 cut(s)	368
AspLEI	GCGC	2 cut(s)	267, 387
AspS9I	GGNCC	2 cut(s)	280, 685
AsuHPI	GGTGA	2 cut(s)	406, 587
AsuII	TTCGAA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	685
BamHI	GGATCC	1 cut(s)	898
BanI	GGYRCC	1 cut(s)	368
BauI	CACGAG	1 cut(s)	57
BbvI	GCAGC	4 cut(s)	11, 14, 475, 497
BciVI	GTATCC	1 cut(s)	279
BcoDI	GTCTC	5 cut(s)	44, 97, 348, 424, 434
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	5 cut(s)	25, 28, 259, 486, 489
BlsI	GCNGC	5 cut(s)	26, 29, 260, 487, 490
Bme18I	GGWCC	1 cut(s)	685
BmgT120I	GGNCC	2 cut(s)	280, 685
BmiI	GGNNCC	2 cut(s)	370, 900
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	4 cut(s)	123, 691, 735, 844
BmuI	ACTGGG	1 cut(s)	703
Bpu14I	TTCGAA	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	749
BsaHI	GRCGYC	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 694, 765
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	3 cut(s)	111, 698, 847
Bse3DI	GCAATG	1 cut(s)	679
Bse8I	GATNNNNATC	1 cut(s)	749
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	749
BseLI	CCNNNNNNNGG	3 cut(s)	278, 694, 765
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	4 cut(s)	419, 437, 533, 854
BseNI	ACTGG	3 cut(s)	111, 698, 847
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	11, 14, 475, 497
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	283, 362
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	278, 694, 765
BsmAI	GTCTC	5 cut(s)	44, 97, 348, 424, 434
BsmFI	GGGAC	1 cut(s)	237
BsmI	GAATGC	2 cut(s)	267, 548
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	455
Bsp143I	GATC	4 cut(s)	61, 509, 755, 898
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	3 cut(s)	259, 731, 803
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	4 cut(s)	420, 436, 532, 853
BspLI	GGNNCC	2 cut(s)	370, 900
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	3 cut(s)	750, 893, 906
BspT104I	TTCGAA	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	111, 698, 847
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	61, 509, 755, 898
BssNAI	GTATAC	1 cut(s)	501
BssNI	GRCGYC	1 cut(s)	416
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	635
BstACI	GRCGYC	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	263, 363, 706
BstDEI	CTNAG	6 cut(s)	299, 423, 428, 519, 785, 840
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	267, 387
BstKTI	GATC	4 cut(s)	64, 512, 758, 901
BstMAI	GTCTC	5 cut(s)	44, 97, 348, 424, 434
BstMBI	GATC	4 cut(s)	61, 509, 755, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 264
BstNSI	RCATGY	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	4 cut(s)	11, 14, 475, 497
BstX2I	RGATCY	2 cut(s)	755, 898
BstYI	RGATCY	2 cut(s)	755, 898
BstZ17I	GTATAC	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	848
Cac8I	GCNNGC	3 cut(s)	263, 363, 706
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	2 cut(s)	267, 387
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	280, 685
CseI	GACGC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	369, 476
CviAII	CATG	5 cut(s)	19, 79, 358, 434, 710
CviQI	GTAC	2 cut(s)	369, 476
DdeI	CTNAG	6 cut(s)	299, 423, 428, 519, 785, 840
DpnI	GATC	4 cut(s)	63, 511, 757, 900
DpnII	GATC	4 cut(s)	61, 509, 755, 898
DraI	TTTAAA	1 cut(s)	535
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	5 cut(s)	22, 82, 361, 437, 713
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	5 cut(s)	18, 78, 357, 433, 709
FblI	GTMKAC	2 cut(s)	407, 500
Fnu4HI	GCNGC	5 cut(s)	25, 28, 259, 486, 489
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	5 cut(s)	25, 28, 259, 486, 489
FspBI	CTAG	1 cut(s)	515
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	2 cut(s)	266, 386
GluI	GCNGC	5 cut(s)	25, 28, 259, 486, 489
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	283, 362
HgaI	GACGC	1 cut(s)	393
HhaI	GCGC	2 cut(s)	267, 387
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	5 cut(s)	22, 82, 361, 437, 713
Hin6I	GCGC	2 cut(s)	265, 385
HinP1I	GCGC	2 cut(s)	265, 385
HinfI	GANTC	5 cut(s)	146, 239, 322, 452, 808
HpaII	CCGG	2 cut(s)	283, 362
HphI	GGTGA	2 cut(s)	406, 587
Hpy166II	GTNNAC	3 cut(s)	408, 420, 501
Hpy188I	TCNGA	4 cut(s)	522, 742, 755, 853
Hpy188III	TCNNGA	3 cut(s)	59, 253, 308
Hpy8I	GTNNAC	3 cut(s)	408, 420, 501
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	3 cut(s)	385, 388, 789
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	3 cut(s)	398, 416, 876
HpyCH4V	TGCA	5 cut(s)	339, 491, 672, 704, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 264
HpyF3I	CTNAG	6 cut(s)	299, 423, 428, 519, 785, 840
HpySE526I	ACGT	3 cut(s)	398, 416, 876
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	5 cut(s)	22, 82, 361, 437, 713
HspAI	GCGC	2 cut(s)	265, 385
KpnI	GGTACC	1 cut(s)	372
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	61, 509, 755, 898
LmnI	GCTCC	2 cut(s)	551, 800
Lsp1109I	GCAGC	4 cut(s)	11, 14, 475, 497
LweI	GCATC	4 cut(s)	123, 691, 735, 844
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	3 cut(s)	398, 416, 876
MaeIII	GTNAC	2 cut(s)	109, 394
MalI	GATC	4 cut(s)	63, 511, 757, 900
MbiI	CCGCTC	1 cut(s)	803
MboI	GATC	4 cut(s)	61, 509, 755, 898
MboII	GAAGA	3 cut(s)	56, 652, 790
MflI	RGATCY	2 cut(s)	755, 898
MluCI	AATT	4 cut(s)	125, 530, 550, 615
MnlI	CCTC	9 cut(s)	29, 197, 430, 565, 636, 819, 849, 856, 889
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	4 cut(s)	350, 534, 563, 872
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	3 cut(s)	292, 427, 488
MspI	CCGG	2 cut(s)	283, 362
Mva1269I	GAATGC	2 cut(s)	267, 548
MwoI	GCNNNNNNNGC	2 cut(s)	185, 264
NaeI	GCCGGC	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	61, 509, 755, 898
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	5 cut(s)	22, 82, 361, 437, 713
NlaIV	GGNNCC	2 cut(s)	370, 900
NmuCI	GTSAC	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	266
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	455
PctI	GAATGC	2 cut(s)	267, 548
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	5 cut(s)	146, 239, 322, 452, 808
PkrI	GCNGC	5 cut(s)	26, 29, 260, 487, 490
PspN4I	GGNNCC	2 cut(s)	370, 900
PspPI	GGNCC	2 cut(s)	280, 685
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	2 cut(s)	755, 898
PvuII	CAGCTG	3 cut(s)	292, 427, 488
RsaI	GTAC	2 cut(s)	370, 477
RsaNI	GTAC	2 cut(s)	369, 476
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	350, 534, 563, 872
SatI	GCNGC	5 cut(s)	25, 28, 259, 486, 489
Sau3AI	GATC	4 cut(s)	61, 509, 755, 898
Sau96I	GGNCC	2 cut(s)	280, 685
SfaNI	GCATC	4 cut(s)	123, 691, 735, 844
SfcI	CTRYAG	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	455
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
Sse9I	AATT	4 cut(s)	125, 530, 550, 615
SsiI	CCGC	3 cut(s)	259, 731, 803
SspMI	CTAG	1 cut(s)	515
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	3 cut(s)	401, 419, 879
TaqI	TCGA	3 cut(s)	455, 912, 918
TasI	AATT	4 cut(s)	125, 530, 550, 615
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	5 cut(s)	146, 239, 322, 452, 808
Tru1I	TTAA	4 cut(s)	350, 534, 563, 872
Tru9I	TTAA	4 cut(s)	350, 534, 563, 872
TscAI	CASTG	1 cut(s)	848
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	4 cut(s)	24, 27, 485, 488
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	314, 726
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	2 cut(s)	530, 615
XceI	RCATGY	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	407, 500
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	1 cut(s)	515
ZraI	GACGTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.