Rmu_co8469623.1_g000001

DUF4210

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8469623.1
OG0001019
Physical Location & Seq
Forward (+)
1 .. 1108
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8469623.1_g000001.1.cds

Sequence Viewer

Length: 539 bp
gggaagtacagaatgcagctggagtagacaatacaacaggatcactagatcagagaactgaaggctctaacttggtggattcaatatttaagggtgatatgtccaagctatcccctaaatcaggaagggtaggaattccttccttcatggggattgagaagaagtttgatggcaaggagttcccacgcaatgatgataaggaccataactgggttgatgcatgccatgaaactgacaggaaacaagtgcttggttgttcaagggttaatcaaaacaagaatagtgctcttcgttatgctctgcatctccgtttcgtttgccctcttcctaaaaagggttctaggtcacttcagagatgcaaatcagataccctgtctgcatcacagagaacaagcttagacatggtaggggagcggagattctacctctacaatgacttgagggttgtattccctcagcgccagacagatgctgatgagggcaagttaaacgtggagtaccatttcccagaagatccaaaatacttcgacatcgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromosome_seg DUF4210

Protein Analysis

178

Amino Acids

20.29

Weight (kDa)

7.9

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 26
AciI CCGC 1 cut(s) 414
AclWI GGATC 2 cut(s) 48, 508
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 2 cut(s) 80, 334
AfaI GTAC 2 cut(s) 8, 499
AfiI CCNNNNNNNGG 4 cut(s) 121, 149, 210, 334
AgsI TTSAA 2 cut(s) 83, 260
AluBI AGCT 3 cut(s) 19, 108, 395
AluI AGCT 3 cut(s) 19, 108, 395
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 2 cut(s) 48, 508
AlwNI CAGNNNCTG 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 163
BfaI CTAG 2 cut(s) 46, 341
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 5 cut(s) 207, 312, 346, 388, 459
BmuI ACTGGG 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 360
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 149, 210, 334
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 360
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 4 cut(s) 121, 149, 210, 334
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 288
BslI CCNNNNNNNGG 4 cut(s) 121, 149, 210, 334
BsmI GAATGC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 40, 48, 513
BspACI CCGC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 468
BspPI GGATC 2 cut(s) 48, 508
BspQI GCTCTTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 214
BssMI GATC 3 cut(s) 40, 48, 513
Bst6I CTCTTC 2 cut(s) 293, 329
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 396, 455
BstENI CCTNNNNNAGG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 3 cut(s) 43, 51, 516
BstMBI GATC 3 cut(s) 40, 48, 513
BstNSI RCATGY 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 472
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 7, 498
CviAII CATG 4 cut(s) 147, 221, 226, 402
CviJI RGCY 4 cut(s) 19, 65, 108, 395
CviKI_1 RGCY 4 cut(s) 19, 65, 108, 395
CviQI GTAC 2 cut(s) 7, 498
DdeI CTNAG 2 cut(s) 396, 455
DpnI GATC 3 cut(s) 42, 50, 515
DpnII GATC 3 cut(s) 40, 48, 513
Eam1104I CTCTTC 2 cut(s) 293, 329
EarI CTCTTC 2 cut(s) 293, 329
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 80, 334
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 222
FaeI CATG 4 cut(s) 150, 224, 229, 405
FaiI YATR 7 cut(s) 100, 148, 206, 222, 227, 296, 403
FatI CATG 4 cut(s) 146, 220, 225, 401
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 2 cut(s) 46, 341
GlaI GCGC 1 cut(s) 460
GluI GCNGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 462
HhaI GCGC 1 cut(s) 461
Hin1II CATG 4 cut(s) 150, 224, 229, 405
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 2 cut(s) 79, 419
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 53, 353, 366
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 55, 119, 149, 153
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 5 cut(s) 16, 220, 303, 359, 379
HpyF3I CTNAG 2 cut(s) 396, 455
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 4 cut(s) 150, 224, 229, 405
HspAI GCGC 1 cut(s) 459
Kzo9I GATC 3 cut(s) 40, 48, 513
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 411
LpnPI CCDG 8 cut(s) 5, 23, 107, 195, 222, 385, 475, 521
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 5 cut(s) 207, 312, 346, 388, 459
MaeI CTAG 2 cut(s) 46, 341
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 42, 50, 515
MbiI CCGCTC 1 cut(s) 414
MboI GATC 3 cut(s) 40, 48, 513
MboII GAAGA 4 cut(s) 171, 280, 316, 523
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 1 cut(s) 134
MnlI CCTC 5 cut(s) 332, 434, 436, 464, 471
Mph1103I ATGCAT 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 3 cut(s) 89, 266, 487
MspA1I CMGCKG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 18
NdeII GATC 3 cut(s) 40, 48, 513
NlaIII CATG 4 cut(s) 150, 224, 229, 405
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 293
PctI GAATGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 79, 419
PkrI GCNGC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 2 cut(s) 8, 499
RsaNI GTAC 2 cut(s) 7, 498
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 89, 266, 487
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 3 cut(s) 40, 48, 513
Sau96I GGNCC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 21, 110, 346, 397, 428, 494
SfaNI GCATC 5 cut(s) 207, 312, 346, 388, 459
SinI GGWCC 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SphI GCATGC 1 cut(s) 224
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 414
SspI AATATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 46, 341
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 527, 533
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 79, 419
Tru1I TTAA 3 cut(s) 89, 266, 487
Tru9I TTAA 3 cut(s) 89, 266, 487
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 135, 242
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 2 cut(s) 46, 341
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.