Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001019

Physical Location & Seq

Genomic Coordinates Reverse (-)

71402028 .. 71406473

Gene Structure 4446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0592000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGGATGATTTTATTTTCGACGTGGAGGCGTACGGTGTTTGGATAGTCCCACAAATAAAAATAGAAATAGCAAGCGCATTCCTGAATCCATCATCATCATCAATTCATCATCCCCAATTTGTCCCTCCCTTTTCAGCTAATTCACTTCTCCGCTCCCCAATCTCAAACCCTAGCTTCTCCCTCCTCACGCTCCAACCTCATCTCACCAACTCCACCAACCCCATCCAATACTCAATCGCGATTTTTAGGGTTTTCGAATTGAAGTCCTCCGAAGCTGCTCTTGAAGTTCGATTTAGGGTTTTGCAGCAGGCGAAGCTCGACGAGATGAGTGCTCAGAAGAAGAGGAACTTCCAAATTGAGGCGTTTAAGCATCGGGTCGTGGTTGATCCGAAATACGCAGAGAAGACTTGGACGATCCTGGAGCATGCCATCAAAGAAATCTATAATCACAATGCTAGCGGGCTCAGTTTTGAAGAGCTTTATAGGAATGCTTACAATATGGTGCTGCACAAATTTGGAGAGAAACTGTACTCTGGTCTGGTGAGAACCATGACTTATCATCTGATGGAAATATCCAAATCGATTGAAGCTGCTCAGGGAGAGCTGTTTCTGGAAGAGCTTAACAGAAAATGGGCAGAGCATAACAAGGCGTTGCAGATGATTCGAGACATATTGATGTACATGGACAGAACTTTTATTCCAAGCACCCACAAAACCCCTGTTCATGAGCTTGGTCTGAACCTTTGGAGGGATGTCGTCATTCACTCAAGCAAAACCCAGTCTAGGCTTTTGGACACGCTTCTTGAGCTTGTGCTTCGAGAAAGAAATGGTGATGTAATCAACAGAGGCTTGATGCGGAATATTATAAAAATGTTAATGGATTTAGGTTCTTATGTTTACCAAGAAGACTTTGAGAAGCATTTTCTTGAAGTTTCAGCTGATTTTTACCGCTGTGAGTCTCAAGAGTTCATCGAGTCATGTGATTGTGGAAACTATTTAAAGAAGGCCGAAAGGCGCCTAAATGAGGAGATGGAGAGAGTGTCCCATTACTTAGATGCTAAAAGTGAAGCTAAGATTACCAGTGTGGTGGAAAAGGAGATGATTGAAAGTCACATGAACAGGCTAGTTCATATGGAAAGCTCAGGTTTAGTTAATATGCTTGTAGATGACAAATATGAAGACTTGGGAAGAATGTACAACTTGTTTCGCAGAGTGCAGAATGGGCTTGTAATTGTAAGAGATGTCATGACTGCTTACATCCGAGATACTGGAAAGCATCTAGTTACTGACCCAGAAAGGTTAAGGGATCCTGTAGACTTTGTGCAACGTCTCCTTGATATGAAGGATAAGTACGACAAAATCATCAGTTTGGCATTTAACAATGACAAGACATTCCAGAATGCTTTAAACTCTTCTTTTGAGTACTTCATTAATTTGAATGCCCGGTCCCCTGAATTTATTTCTCTCTTTGTGGATGACAAGCTTCGGAAAGGTCTTAGAGGGGTTAGCGAGGAGGATGTAGAGGTTGTACTGGACAAGGTCATGATGCTTTTCCGTTACCTTCAGGAGAAAGATGTGTTTGAAAAGTATTACAAGCAACACTTGGCAAAGAGGCTTCTTTCAGGCAAAACTGTTTCTGACGATGCAGAAAGAAGTCTGATTGTAAAGCTCAAAACAGAGTGTGGATATCAATTTACTTCCAAGTTGGAGGGTATGTTCACTGATATGAAAACCTCTCAAGATACAATGCATGGGTTCTACACTGCAGTTGGCCCTCAGTTAGGTGATAGCCCAACACTAACTGTCCAGGTCCTCACCACAGGTTCATGGCCCACTCAGCCAAGTGTGACATGCAACCTTCCAGCTGAAATTATGTGGGTATGTGAGAAGTTCAAGAGTTATTATCTTGGGACCCATACTGGGCGGAGATTGTCCTGGCAAACTAATATGGGAACAGCTGATTTGAAAACAACTTTTGGAAAGGGCCAGAAGCATGAGCTGAATGTTTCGACGTATCAGATGTGTGTGCTGATGCTATTCAACAATGCTGACCAGTTGACGTATAAGGAAATCGAGCAGGCTACAGAGATCCCAGCCACTGAATTGAAGAGGTGCCTGCAGTCTCTGGCCTGTGTTAAGGGGAAGAATGTTCTTCGGAAGGAGCCAATGAGCAAGGACATAGTTGAGGATGATACCTTTTTCTTCAATGACAAGTTCACGAGCAAGTTCTTTAAAGTAAAGATAGGTACCGTGGTTGCACAAAGGGAGTCTGAACCAGAAAACCTAGAAACCCGGCAGAGAGTAGAGGAAGACAGAAAGCCCCAGATTGAAGCAGCAATTGTGAGGATCATGAAGTCAAGGCGGGTACTGGATCACAATAATATAGTTGCTGAGGTCACGAAGCAGCTGCAGGCGCGATTCTTACCCAATCCTGTAGTAATAAAGAAGCGTATTGAGTCCCTCATTGAGCGGGAGTTTTTGGAGAGGGATAAAACAGATAGAAAATTGTACAGGTATCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromosome_seg DUF4210

Protein Analysis

841

Amino Acids

97.87

Weight (kDa)

7.09

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	137 - 583	1.8e-161	Cullin alpha solenoid domain
Cullin_AB	PF26557	604 - 739	4.3e-51	Cullin alpha+beta domain
Cullin_Nedd8	PF10557	771 - 833	3.6e-26	Cullin protein neddylation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT3G26890 AT5G41110 AT5G41110 AT5G41110
fragaria_vesca	FvH4_3g02970 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_5g09080 FvH4_6g54040 FvH4_6g54040 FvH4_6g54040
malus_domestica	MD06G1134000.v1.1 MD09G1006000.v1.1 MD14G1150300.v1.1 MD17G1010000.v1.1
prunus_persica	Prupe.3G311000_v2.0.a1 Prupe.3G311000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1 Prupe.5G145000_v2.0.a1
pyrus_communis	pycom03g07800 pycom06g12520 pycom111g00440 pycom14g12490 pycom17g00450
rosa_chinensis	RchiOBHm_Chr2g0176221 RchiOBHm_Chr7g0189131
rosa_laevigata	RLG00000004630 RLG00000022392
rosa_multiflora	Rmu_co8469623.1_g000001 Rmu_sc0000405.1_g000014 Rmu_sc0007859.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076670 Rroxscaffold_3G00265760
rosa_rugosa	Rorug02G0591900 Rorug02G0591900 Rorug02G0592000 Rorug06G0496100
rosa_samantha	Rh1DG179700 Rh2AG670500 Rh2BG682000 Rh2CG644800 Rh2DG695600 Rh7AG100900 Rh7BG103500 Rh7CG104900 Rh7DG102800
rosa_wichuraiana	Rw2G055000 Rw7G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
Acc65I	GGTACC	1 cut(s)	2246
AccB1I	GGYRCC	3 cut(s)	1014, 2112, 2246
AccBSI	CCGCTC	2 cut(s)	153, 2470
AccI	GTMKAC	1 cut(s)	1314
AccII	CGCG	2 cut(s)	239, 2416
AciI	CCGC	7 cut(s)	151, 459, 856, 949, 1924, 2362, 2470
AclWI	GGATC	7 cut(s)	380, 409, 1301, 1314, 2083, 2354, 2379
AcsI	RAATTY	2 cut(s)	512, 1454
AcuI	CTGAAG	1 cut(s)	1547
AcyI	GRCGYC	1 cut(s)	1015
AfiI	CCNNNNNNNGG	6 cut(s)	358, 748, 783, 1024, 1781, 1920
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	3 cut(s)	417, 1806, 1934
AloI	GAACNNNNNNTCC	4 cut(s)	682, 714, 1700, 1732
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	4 cut(s)	660, 963, 1334, 2127
AlwI	GGATC	7 cut(s)	380, 409, 1301, 1314, 2083, 2354, 2379
AlwNI	CAGNNNCTG	2 cut(s)	2099, 2125
AoxI	GGCC	5 cut(s)	1005, 1771, 1829, 1984, 2127
ApeKI	GCWGC	7 cut(s)	275, 304, 505, 590, 2333, 2404, 2407
ApoI	RAATTY	2 cut(s)	512, 1454
AseI	ATTAAT	1 cut(s)	1431
Asp718I	GGTACC	1 cut(s)	2246
AspLEI	GCGC	3 cut(s)	77, 1017, 2416
AspS9I	GGNCC	6 cut(s)	1446, 1772, 1810, 1830, 1911, 1984
AsuC2I	CCSGG	2 cut(s)	1444, 2293
AsuHPI	GGTGA	5 cut(s)	196, 553, 842, 1796, 1807
AsuII	TTCGAA	1 cut(s)	255
AsuNHI	GCTAGC	1 cut(s)	455
AvaII	GGWCC	3 cut(s)	1446, 1810, 1911
BaeI	ACNNNNGTAYC	2 cut(s)	2238, 2271
BamHI	GGATCC	1 cut(s)	1306
BanI	GGYRCC	3 cut(s)	1014, 2112, 2246
BanII	GRGCYC	1 cut(s)	465
BarI	GAAGNNNNNNTAC	2 cut(s)	1334, 1366
BauI	CACGAG	1 cut(s)	2218
BbsI	GAAGAC	4 cut(s)	410, 912, 1185, 2316
Bbv12I	GWGCWC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	2391
BbvI	GCAGC	7 cut(s)	262, 316, 492, 577, 2345, 2394, 2416
BccI	CCATC	5 cut(s)	97, 230, 437, 559, 1024
BcgI	CGANNNNNNTGC	6 cut(s)	311, 345, 644, 678, 2389, 2423
BciT130I	CCWGG	3 cut(s)	419, 1808, 1936
BcnI	CCSGG	2 cut(s)	1444, 2293
BcoDI	GTCTC	4 cut(s)	660, 963, 1334, 2127
BfaI	CTAG	6 cut(s)	171, 456, 783, 1124, 1280, 2285
BfmI	CTRYAG	6 cut(s)	1311, 1764, 2082, 2117, 2408, 2433
BfoI	RGCGCY	1 cut(s)	1018
BisI	GCNGC	7 cut(s)	276, 305, 506, 591, 2334, 2405, 2408
BlsI	GCNGC	7 cut(s)	277, 306, 507, 592, 2335, 2406, 2409
BmcAI	AGTACT	1 cut(s)	1424
Bme1390I	CCNGG	5 cut(s)	419, 1444, 1808, 1936, 2293
Bme18I	GGWCC	3 cut(s)	1446, 1810, 1911
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	6 cut(s)	1446, 1772, 1810, 1830, 1911, 1984
BmiI	GGNNCC	8 cut(s)	1016, 1308, 1448, 1912, 1913, 2114, 2163, 2248
BmrFI	CCNGG	5 cut(s)	419, 1444, 1808, 1936, 2293
BmrI	ACTGGG	2 cut(s)	772, 1929
BmsI	GCATC	7 cut(s)	379, 843, 1045, 1285, 1536, 1633, 2022
BmtI	GCTAGC	1 cut(s)	459
BmuI	ACTGGG	2 cut(s)	772, 1929
BpiI	GAAGAC	4 cut(s)	410, 912, 1185, 2316
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	3 cut(s)	594, 1141, 2391
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	4 cut(s)	751, 824, 945, 1722
BpuMI	CCSGG	2 cut(s)	1444, 2293
Bsa29I	ATCGAT	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	1015
BsaJI	CCNNGG	1 cut(s)	2250
BsaXI	ACNNNNNCTCC	4 cut(s)	1025, 1055, 1700, 1730
Bsc4I	CCNNNNNNNGG	6 cut(s)	358, 748, 783, 1024, 1781, 1920
Bse1I	ACTGG	7 cut(s)	778, 1080, 1273, 1536, 1924, 2053, 2373
BseBI	CCWGG	3 cut(s)	419, 1808, 1936
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	2250
BseGI	GGATG	8 cut(s)	10, 109, 222, 757, 1257, 1480, 1522, 2194
BseLI	CCNNNNNNNGG	6 cut(s)	358, 748, 783, 1024, 1781, 1920
BseMII	CTCAG	7 cut(s)	347, 478, 608, 1155, 1790, 1850, 2382
BseNI	ACTGG	7 cut(s)	778, 1080, 1273, 1536, 1924, 2053, 2373
BseRI	GAGGAG	3 cut(s)	173, 1040, 1526
BseXI	GCAGC	7 cut(s)	262, 316, 492, 577, 2345, 2394, 2416
BseYI	CCCAGC	1 cut(s)	2092
BsgI	GTGCAG	2 cut(s)	491, 1235
Bsh1236I	CGCG	2 cut(s)	239, 2416
BshFI	GGCC	5 cut(s)	1007, 1773, 1831, 1986, 2129
BshNI	GGYRCC	3 cut(s)	1014, 2112, 2246
BshVI	ATCGAT	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	1444, 2293
BsiWI	CGTACG	1 cut(s)	30
BslFI	GGGAC	6 cut(s)	32, 107, 1027, 1432, 1924, 2443
BslI	CCNNNNNNNGG	6 cut(s)	358, 748, 783, 1024, 1781, 1920
BsmAI	GTCTC	4 cut(s)	660, 963, 1334, 2127
BsmBI	CGTCTC	1 cut(s)	1334
BsmFI	GGGAC	6 cut(s)	32, 107, 1027, 1432, 1924, 2443
BsmI	GAATGC	4 cut(s)	77, 493, 1405, 1444
BsnI	GGCC	5 cut(s)	1007, 1773, 1831, 1986, 2129
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	334, 465
Bsp1407I	TGTACA	3 cut(s)	678, 1194, 2508
Bsp143I	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
Bsp68I	TCGCGA	1 cut(s)	239
BspACI	CCGC	7 cut(s)	151, 459, 856, 949, 1924, 2362, 2470
BspANI	GGCC	5 cut(s)	1007, 1773, 1831, 1986, 2129
BspCNI	CTCAG	7 cut(s)	346, 477, 607, 1154, 1789, 1849, 2383
BspDI	ATCGAT	1 cut(s)	581
BspFNI	CGCG	2 cut(s)	239, 2416
BspHI	TCATGA	4 cut(s)	724, 1245, 1542, 2349
BspLI	GGNNCC	8 cut(s)	1016, 1308, 1448, 1912, 1913, 2114, 2163, 2248
BspMAI	CTGCAG	3 cut(s)	1768, 2121, 2412
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	7 cut(s)	380, 409, 1301, 1314, 2083, 2354, 2379
BspQI	GCTCTTC	2 cut(s)	468, 609
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	3 cut(s)	1014, 2112, 2246
BsrBI	CCGCTC	2 cut(s)	153, 2470
BsrGI	TGTACA	3 cut(s)	678, 1194, 2508
BsrI	ACTGG	7 cut(s)	778, 1080, 1273, 1536, 1924, 2053, 2373
BssECI	CCNNGG	1 cut(s)	2250
BssMI	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
BssNI	GRCGYC	1 cut(s)	1015
BssSI	CACGAG	1 cut(s)	2218
Bst2BI	CACGAG	1 cut(s)	2218
Bst2UI	CCWGG	3 cut(s)	419, 1808, 1936
Bst4CI	ACNGT	5 cut(s)	35, 528, 1633, 1804, 2251
Bst6I	CTCTTC	5 cut(s)	335, 468, 609, 1417, 2102
BstACI	GRCGYC	1 cut(s)	1015
BstAUI	TGTACA	3 cut(s)	678, 1194, 2508
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	8 cut(s)	73, 309, 426, 457, 461, 2079, 2117, 2412
BstDSI	CCRYGG	1 cut(s)	2250
BstENI	CCTNNNNNAGG	2 cut(s)	1022, 1779
BstF5I	GGATG	8 cut(s)	10, 109, 222, 757, 1257, 1480, 1522, 2194
BstFNI	CGCG	2 cut(s)	239, 2416
BstH2I	RGCGCY	1 cut(s)	1018
BstHHI	GCGC	3 cut(s)	77, 1017, 2416
BstKTI	GATC	6 cut(s)	388, 417, 1309, 2091, 2349, 2374
BstMAI	GTCTC	4 cut(s)	660, 963, 1334, 2127
BstMBI	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
BstMWI	GCNNNNNNNGC	5 cut(s)	313, 805, 1222, 1837, 2413
BstNI	CCWGG	3 cut(s)	419, 1808, 1936
BstNSI	RCATGY	2 cut(s)	428, 1854
BstSCI	CCNGG	5 cut(s)	417, 1442, 1806, 1934, 2291
BstSFI	CTRYAG	6 cut(s)	1311, 1764, 2082, 2117, 2408, 2433
BstUI	CGCG	2 cut(s)	239, 2416
BstV1I	GCAGC	7 cut(s)	262, 316, 492, 577, 2345, 2394, 2416
BstV2I	GAAGAC	4 cut(s)	410, 912, 1185, 2316
BstX2I	RGATCY	2 cut(s)	1306, 2088
BstXI	CCANNNNNNTGG	1 cut(s)	1087
BstYI	RGATCY	2 cut(s)	1306, 2088
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	5 cut(s)	1007, 1773, 1831, 1986, 2129
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	2250
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	8 cut(s)	10, 109, 222, 757, 1257, 1480, 1522, 2194
BtsI	GCAGTG	1 cut(s)	1761
BtsIMutI	CAGTG	4 cut(s)	1087, 1719, 1761, 2097
BtuMI	TCGCGA	1 cut(s)	239
Cac8I	GCNNGC	8 cut(s)	73, 309, 426, 457, 461, 2079, 2117, 2412
CaiI	CAGNNNCTG	2 cut(s)	2099, 2125
CciI	TCATGA	4 cut(s)	724, 1245, 1542, 2349
CfoI	GCGC	3 cut(s)	77, 1017, 2416
Cfr13I	GGNCC	6 cut(s)	1446, 1772, 1810, 1830, 1911, 1984
ClaI	ATCGAT	1 cut(s)	581
DinI	GGCGCC	1 cut(s)	1016
DpnI	GATC	6 cut(s)	387, 416, 1308, 2090, 2348, 2373
DpnII	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
DraI	TTTAAA	3 cut(s)	999, 1407, 2233
Eam1104I	CTCTTC	5 cut(s)	335, 468, 609, 1417, 2102
EarI	CTCTTC	5 cut(s)	335, 468, 609, 1417, 2102
EciI	GGCGGA	1 cut(s)	1939
Eco24I	GRGCYC	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	1688
Eco47I	GGWCC	3 cut(s)	1446, 1810, 1911
Eco57I	CTGAAG	1 cut(s)	1547
EcoNI	CCTNNNNNAGG	2 cut(s)	1022, 1779
EcoO109I	RGGNCCY	2 cut(s)	1810, 1911
EcoRII	CCWGG	3 cut(s)	417, 1806, 1934
EcoRV	GATATC	1 cut(s)	1688
EcoT22I	ATGCAT	1 cut(s)	1752
EcoT38I	GRGCYC	1 cut(s)	465
EgeI	GGCGCC	1 cut(s)	1016
EheI	GGCGCC	1 cut(s)	1016
Esp3I	CGTCTC	1 cut(s)	1334
FalI	AAGNNNNNCTT	6 cut(s)	264, 296, 332, 364, 1586, 1618
FaqI	GGGAC	6 cut(s)	32, 107, 1027, 1432, 1924, 2443
FauI	CCCGC	3 cut(s)	452, 2355, 2463
FauNDI	CATATG	1 cut(s)	1131
FblI	GTMKAC	1 cut(s)	1314
Fnu4HI	GCNGC	7 cut(s)	276, 305, 506, 591, 2334, 2405, 2408
FokI	GGATG	8 cut(s)	17, 96, 209, 764, 1244, 1487, 1529, 2201
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	7 cut(s)	276, 305, 506, 591, 2334, 2405, 2408
FspBI	CTAG	6 cut(s)	171, 456, 783, 1124, 1280, 2285
GlaI	GCGC	3 cut(s)	76, 1016, 2415
GluI	GCNGC	7 cut(s)	276, 305, 506, 591, 2334, 2405, 2408
GsaI	CCCAGC	1 cut(s)	2096
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	1018
HaeIII	GGCC	5 cut(s)	1007, 1773, 1831, 1986, 2129
HapII	CCGG	2 cut(s)	1444, 2293
HhaI	GCGC	3 cut(s)	77, 1017, 2416
Hin1I	GRCGYC	1 cut(s)	1015
Hin6I	GCGC	3 cut(s)	75, 1015, 2414
HinP1I	GCGC	3 cut(s)	75, 1015, 2414
HincII	GTYRAC	1 cut(s)	2058
HindII	GTYRAC	1 cut(s)	2058
HindIII	AAGCTT	1 cut(s)	1481
HinfI	GANTC	7 cut(s)	85, 661, 956, 974, 2267, 2418, 2456
HpaII	CCGG	2 cut(s)	1444, 2293
HphI	GGTGA	5 cut(s)	196, 553, 842, 1796, 1807
Hpy166II	GTNNAC	5 cut(s)	898, 1315, 1719, 2058, 2217
Hpy8I	GTNNAC	5 cut(s)	898, 1315, 1719, 2058, 2217
Hpy99I	CGWCG	3 cut(s)	23, 323, 2014
HpyAV	CCTTC	5 cut(s)	997, 1336, 1571, 1868, 2152
HpyCH4III	ACNGT	5 cut(s)	35, 528, 1633, 1804, 2251
HpyCH4IV	ACGT	4 cut(s)	21, 1327, 2012, 2060
HpyF10VI	GCNNNNNNNGC	5 cut(s)	313, 805, 1222, 1837, 2413
HpySE526I	ACGT	4 cut(s)	21, 1327, 2012, 2060
Hsp92I	GRCGYC	1 cut(s)	1015
HspAI	GCGC	3 cut(s)	75, 1015, 2414
KasI	GGCGCC	1 cut(s)	1014
KflI	GGGWCCC	1 cut(s)	1911
KpnI	GGTACC	1 cut(s)	2250
Kzo9I	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
LguI	GCTCTTC	2 cut(s)	468, 609
LmnI	GCTCC	4 cut(s)	158, 195, 421, 2161
Lsp1109I	GCAGC	7 cut(s)	262, 316, 492, 577, 2345, 2394, 2416
LweI	GCATC	7 cut(s)	379, 843, 1045, 1285, 1536, 1633, 2022
MaeI	CTAG	6 cut(s)	171, 456, 783, 1124, 1280, 2285
MaeII	ACGT	4 cut(s)	21, 1327, 2012, 2060
MaeIII	GTNAC	5 cut(s)	1109, 1282, 1556, 1846, 2395
MalI	GATC	6 cut(s)	387, 416, 1308, 2090, 2348, 2373
MbiI	CCGCTC	2 cut(s)	153, 2470
MboI	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
MfeI	CAATTG	1 cut(s)	2337
MflI	RGATCY	2 cut(s)	1306, 2088
MhlI	GDGCHC	2 cut(s)	334, 465
Mly113I	GGCGCC	1 cut(s)	1015
MlyI	GAGTC	4 cut(s)	965, 983, 2276, 2465
MmeI	TCCRAC	2 cut(s)	217, 1686
Mph1103I	ATGCAT	1 cut(s)	1752
MslI	CAYNNNNRTG	2 cut(s)	674, 1724
MspA1I	CMGCKG	5 cut(s)	938, 951, 1865, 1958, 2407
MspI	CCGG	2 cut(s)	1444, 2293
MspR9I	CCNGG	5 cut(s)	419, 1444, 1808, 1936, 2293
MunI	CAATTG	1 cut(s)	2337
Mva1269I	GAATGC	4 cut(s)	77, 493, 1405, 1444
MvaI	CCWGG	3 cut(s)	419, 1808, 1936
MvnI	CGCG	2 cut(s)	239, 2416
MwoI	GCNNNNNNNGC	5 cut(s)	313, 805, 1222, 1837, 2413
NarI	GGCGCC	1 cut(s)	1015
NciI	CCSGG	2 cut(s)	1444, 2293
NdeI	CATATG	1 cut(s)	1131
NdeII	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
NheI	GCTAGC	1 cut(s)	455
NlaIV	GGNNCC	8 cut(s)	1016, 1308, 1448, 1912, 1913, 2114, 2163, 2248
NmuCI	GTSAC	3 cut(s)	1109, 1846, 2395
NruI	TCGCGA	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	1752
NspI	RCATGY	2 cut(s)	428, 1854
NspV	TTCGAA	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	428
PagI	TCATGA	4 cut(s)	724, 1245, 1542, 2349
PciSI	GCTCTTC	2 cut(s)	468, 609
PctI	GAATGC	4 cut(s)	77, 493, 1405, 1444
PfeI	GAWTC	3 cut(s)	85, 661, 2418
Pfl23II	CGTACG	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	1538
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	7 cut(s)	277, 306, 507, 592, 2335, 2406, 2409
PleI	GAGTC	4 cut(s)	964, 982, 2275, 2464
PluTI	GGCGCC	1 cut(s)	1018
PpsI	GAGTC	4 cut(s)	964, 982, 2275, 2464
PpuMI	RGGWCCY	2 cut(s)	1810, 1911
PshBI	ATTAAT	1 cut(s)	1431
PsiI	TTATAA	1 cut(s)	866
Psp5II	RGGWCCY	2 cut(s)	1810, 1911
Psp6I	CCWGG	3 cut(s)	417, 1806, 1934
PspFI	CCCAGC	1 cut(s)	2092
PspGI	CCWGG	3 cut(s)	417, 1806, 1934
PspLI	CGTACG	1 cut(s)	30
PspN4I	GGNNCC	8 cut(s)	1016, 1308, 1448, 1912, 1913, 2114, 2163, 2248
PspPI	GGNCC	6 cut(s)	1446, 1772, 1810, 1830, 1911, 1984
PspPPI	RGGWCCY	2 cut(s)	1810, 1911
PstI	CTGCAG	3 cut(s)	1768, 2121, 2412
PstNI	CAGNNNCTG	2 cut(s)	2099, 2125
PsuI	RGATCY	2 cut(s)	1306, 2088
PsyI	GACNNNGTC	1 cut(s)	1538
PvuII	CAGCTG	4 cut(s)	938, 1865, 1958, 2407
RruI	TCGCGA	1 cut(s)	239
RseI	CAYNNNNRTG	2 cut(s)	674, 1724
SapI	GCTCTTC	2 cut(s)	468, 609
SatI	GCNGC	7 cut(s)	276, 305, 506, 591, 2334, 2405, 2408
Sau3AI	GATC	6 cut(s)	385, 414, 1306, 2088, 2346, 2371
Sau96I	GGNCC	6 cut(s)	1446, 1772, 1810, 1830, 1911, 1984
ScaI	AGTACT	1 cut(s)	1424
SchI	GAGTC	4 cut(s)	965, 983, 2276, 2465
ScrFI	CCNGG	5 cut(s)	419, 1444, 1808, 1936, 2293
SduI	GDGCHC	2 cut(s)	334, 465
SfaNI	GCATC	7 cut(s)	379, 843, 1045, 1285, 1536, 1633, 2022
SfcI	CTRYAG	6 cut(s)	1311, 1764, 2082, 2117, 2408, 2433
SfoI	GGCGCC	1 cut(s)	1016
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	3 cut(s)	1446, 1810, 1911
SmiMI	CAYNNNNRTG	2 cut(s)	674, 1724
SmlI	CTYRAG	4 cut(s)	766, 803, 960, 1737
SmoI	CTYRAG	4 cut(s)	766, 803, 960, 1737
SphI	GCATGC	1 cut(s)	428
SsiI	CCGC	7 cut(s)	151, 459, 856, 949, 1924, 2362, 2470
SspDI	GGCGCC	1 cut(s)	1014
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	6 cut(s)	171, 456, 783, 1124, 1280, 2285
StyD4I	CCNGG	5 cut(s)	417, 1442, 1806, 1934, 2291
TaaI	ACNGT	5 cut(s)	35, 528, 1633, 1804, 2251
TaiI	ACGT	4 cut(s)	24, 1330, 2015, 2063
TatI	WGTACW	6 cut(s)	528, 678, 1194, 1422, 1528, 2508
TfiI	GAWTC	3 cut(s)	85, 661, 2418
TscAI	CASTG	4 cut(s)	1087, 1726, 1768, 2104
TseFI	GTSAC	3 cut(s)	1109, 1846, 2395
TseI	GCWGC	7 cut(s)	275, 304, 505, 590, 2333, 2404, 2407
Tsp45I	GTSAC	3 cut(s)	1109, 1846, 2395
TspGWI	ACGGA	1 cut(s)	1544
TspRI	CASTG	4 cut(s)	1087, 1726, 1768, 2104
Tth111I	GACNNNGTC	1 cut(s)	1538
VpaK11BI	GGWCC	3 cut(s)	1446, 1810, 1911
VspI	ATTAAT	1 cut(s)	1431
XagI	CCTNNNNNAGG	2 cut(s)	1022, 1779
XapI	RAATTY	2 cut(s)	512, 1454
XceI	RCATGY	2 cut(s)	428, 1854
XmiI	GTMKAC	1 cut(s)	1314
XspI	CTAG	6 cut(s)	171, 456, 783, 1124, 1280, 2285
ZrmI	AGTACT	1 cut(s)	1424
Zsp2I	ATGCAT	1 cut(s)	1752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.