FvH4_3g04110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013605
Physical Location & Seq
Forward (+)
2296892 .. 2298138
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04110.t1

Sequence Viewer

Length: 870 bp
ATGTACAGAACGGAGATGCTAATGGTCTCAGATCACAGGAGCACAACCAAAATCAGTTATAGACGCAAAGGAAGATCAAGGAAGTCAGCTAAACCTAAAAGGCATCTCCCCCAAGCCCAACTTGTCCAAAATGTCAGTGCTGTTATTCCGGATTATCAACAGCGCCAGTTTCAGTACTTCCAAAACCCTGAAACCAAAATCAGTTATAGACGCAAAGGAAGATCAAGGAAGTCAGCTAAACCTAAAAGGCATCTTCCCCAACCTCAACCCCAAATCCAACTTGTCCAAAATGCCAGTGCTGTTATTCCGGATTATCAACAGCGCCAGTTTCAGTACTTCCAAAACCCTGAAACCCGCCCCGACCCGCTTTTCAGTACTCGGGGGCTCTACGGTTGGCCTATCTACCATGGAGCCATGAGTGGTGTGGTCGGCTTTGACACCGTTCATGGGAATGGTGGTTCAGTTGGGTTTGGTTATGGGTACAACGGTGTCGTTGGGGATGGAGGAGCTCAGAATCGTGGGGCTGGTGTGTATCACGAGATCTCGAACGACCGTGGTTTCAGTGGTAGTTTTGTTGGTGAGAGTGTGGAGGTTAGGCCAGTTCCTGATCATAACAACAACAGCAACTCTTCTTCAGTAGTCTCATCAGGAGGTACATTTCCCATGGAGCATGTATTAGTGGCTTCATCGACTAATTCTTCTTCAGTTGGTAGATCATCAGAAGCATCTGATCAACATCTTGGTGCTGCTCCTGCTTGTATTGAGGGGGCTGACATGATGATGATGAGCAGTGGCTATAGTAGTCCTGTTGATTTATCACTCAAATTGTCTCGATCTCTATATCTTGAGGCAAAAAAATCTGGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

31.74

Weight (kDa)

9.84

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 148, 307
AciI CCGC 2 cut(s) 355, 365
AcuI CTGAAG 2 cut(s) 618, 687
AfaI GTAC 6 cut(s) 5, 176, 335, 376, 482, 655
AfiI CCNNNNNNNGG 1 cut(s) 447
AloI GAACNNNNNNTCC 2 cut(s) 442, 474
AluBI AGCT 3 cut(s) 89, 236, 509
AluI AGCT 3 cut(s) 89, 236, 509
Alw21I GWGCWC 2 cut(s) 44, 511
Alw26I GTCTC 3 cut(s) 31, 646, 834
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 378
Aor13HI TCCGGA 2 cut(s) 148, 307
AoxI GGCC 2 cut(s) 395, 596
ApeKI GCWGC 1 cut(s) 746
AspLEI GCGC 2 cut(s) 165, 324
AsuHPI GGTGA 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 378
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BanII GRGCYC 2 cut(s) 387, 511
BauI CACGAG 1 cut(s) 536
Bbv12I GWGCWC 2 cut(s) 44, 511
BbvI GCAGC 1 cut(s) 733
BccI CCATC 1 cut(s) 494
BclI TGATCA 2 cut(s) 607, 730
BcoDI GTCTC 3 cut(s) 31, 646, 834
BfmI CTRYAG 1 cut(s) 796
BfoI RGCGCY 2 cut(s) 166, 325
BglII AGATCT 1 cut(s) 540
BisI GCNGC 1 cut(s) 747
BlsI GCNGC 1 cut(s) 748
BmcAI AGTACT 3 cut(s) 176, 335, 376
BmeT110I CYCGRG 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 412
BmsI GCATC 4 cut(s) 6, 112, 259, 734
BpuEI CTTGAG 1 cut(s) 866
BsaBI GATNNNNATC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 3 cut(s) 406, 553, 663
BsaWI WCCGGW 2 cut(s) 148, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 4 cut(s) 166, 294, 325, 599
Bse8I GATNNNNATC 1 cut(s) 735
BseAI TCCGGA 2 cut(s) 148, 307
BseDI CCNNGG 3 cut(s) 406, 553, 663
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 2 cut(s) 42, 524
BseNI ACTGG 4 cut(s) 166, 294, 325, 599
BseRI GAGGAG 1 cut(s) 519
BseXI GCAGC 1 cut(s) 733
Bsh1285I CGRYCG 1 cut(s) 553
BshFI GGCC 2 cut(s) 397, 598
BsiEI CGRYCG 1 cut(s) 553
BsiHKAI GWGCWC 2 cut(s) 44, 511
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 2 cut(s) 149, 308
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 3 cut(s) 31, 646, 834
BsnI GGCC 2 cut(s) 397, 598
Bso31I GGTCTC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 3 cut(s) 44, 387, 511
Bsp13I TCCGGA 2 cut(s) 148, 307
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
Bsp19I CCATGG 2 cut(s) 406, 663
BspACI CCGC 2 cut(s) 355, 365
BspANI GGCC 2 cut(s) 397, 598
BspCNI CTCAG 2 cut(s) 41, 523
BspEI TCCGGA 2 cut(s) 148, 307
BspLI GGNNCC 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 4 cut(s) 166, 294, 325, 599
BssECI CCNNGG 3 cut(s) 406, 553, 663
BssMI GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 406, 663
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 4 cut(s) 392, 442, 488, 554
Bst6I CTCTTC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 28, 510
BstDSI CCRYGG 3 cut(s) 406, 553, 663
BstF5I GGATG 1 cut(s) 505
BstH2I RGCGCY 2 cut(s) 166, 325
BstHHI GCGC 2 cut(s) 165, 324
BstKTI GATC 8 cut(s) 34, 77, 224, 543, 610, 716, 733, 836
BstMAI GTCTC 3 cut(s) 31, 646, 834
BstMBI GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
BstMCI CGRYCG 1 cut(s) 553
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstNSI RCATGY 1 cut(s) 674
BstSFI CTRYAG 1 cut(s) 796
BstV1I GCAGC 1 cut(s) 733
BstX2I RGATCY 1 cut(s) 540
BstYI RGATCY 1 cut(s) 540
BsuRI GGCC 2 cut(s) 397, 598
BtgI CCRYGG 3 cut(s) 406, 553, 663
BtsCI GGATG 1 cut(s) 505
BtsI GCAGTG 1 cut(s) 796
BtsIMutI CAGTG 4 cut(s) 142, 301, 568, 796
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 2 cut(s) 165, 324
CseI GACGC 2 cut(s) 72, 219
Csp6I GTAC 6 cut(s) 4, 175, 334, 375, 481, 654
CviAII CATG 6 cut(s) 407, 415, 446, 664, 671, 775
CviQI GTAC 6 cut(s) 4, 175, 334, 375, 481, 654
DdeI CTNAG 2 cut(s) 28, 510
DpnI GATC 8 cut(s) 33, 76, 223, 542, 609, 715, 732, 835
DpnII GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 509
Eco130I CCWWGG 2 cut(s) 406, 663
Eco24I GRGCYC 2 cut(s) 387, 511
Eco31I GGTCTC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 509
Eco57I CTGAAG 2 cut(s) 618, 687
Eco88I CYCGRG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 406, 663
EcoT38I GRGCYC 2 cut(s) 387, 511
ErhI CCWWGG 2 cut(s) 406, 663
FaeI CATG 6 cut(s) 410, 418, 449, 667, 674, 778
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 6 cut(s) 406, 414, 445, 663, 670, 774
FauI CCCGC 2 cut(s) 362, 372
FbaI TGATCA 2 cut(s) 607, 730
Fnu4HI GCNGC 1 cut(s) 747
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 2 cut(s) 387, 511
Fsp4HI GCNGC 1 cut(s) 747
GlaI GCGC 2 cut(s) 164, 323
GluI GCNGC 1 cut(s) 747
HaeII RGCGCY 2 cut(s) 166, 325
HaeIII GGCC 2 cut(s) 397, 598
HapII CCGG 2 cut(s) 149, 308
HgaI GACGC 2 cut(s) 72, 219
HhaI GCGC 2 cut(s) 165, 324
Hin1II CATG 6 cut(s) 410, 418, 449, 667, 674, 778
Hin6I GCGC 2 cut(s) 163, 322
HinP1I GCGC 2 cut(s) 163, 322
HinfI GANTC 1 cut(s) 514
HpaII CCGG 2 cut(s) 149, 308
HphI GGTGA 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 31, 513, 721, 730
Hpy188III TCNNGA 8 cut(s) 149, 308, 536, 544, 605, 648, 831, 845
HpyCH4III ACNGT 4 cut(s) 392, 442, 488, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpyF3I CTNAG 2 cut(s) 28, 510
Hsp92II CATG 6 cut(s) 410, 418, 449, 667, 674, 778
HspAI GCGC 2 cut(s) 163, 322
Kpn2I TCCGGA 2 cut(s) 148, 307
Ksp22I TGATCA 2 cut(s) 607, 730
Kzo9I GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
LmnI GCTCC 5 cut(s) 39, 410, 506, 667, 754
Lsp1109I GCAGC 1 cut(s) 733
LweI GCATC 4 cut(s) 6, 112, 259, 734
MalI GATC 8 cut(s) 33, 76, 223, 542, 609, 715, 732, 835
MboI GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
MboII GAAGA 7 cut(s) 84, 231, 245, 621, 624, 690, 693
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 3 cut(s) 44, 387, 511
MluCI AATT 2 cut(s) 694, 824
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 6 cut(s) 273, 497, 583, 644, 757, 841
MroI TCCGGA 2 cut(s) 148, 307
MslI CAYNNNNRTG 3 cut(s) 450, 741, 779
MspI CCGG 2 cut(s) 149, 308
MwoI GCNNNNNNNGC 1 cut(s) 752
NcoI CCATGG 2 cut(s) 406, 663
NdeII GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
NlaIII CATG 6 cut(s) 410, 418, 449, 667, 674, 778
NlaIV GGNNCC 1 cut(s) 412
NspI RCATGY 1 cut(s) 674
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 6 cut(s) 5, 176, 335, 376, 482, 655
RsaNI GTAC 6 cut(s) 4, 175, 334, 375, 481, 654
RseI CAYNNNNRTG 3 cut(s) 450, 741, 779
SacI GAGCTC 1 cut(s) 511
SatI GCNGC 1 cut(s) 747
Sau3AI GATC 8 cut(s) 31, 74, 221, 540, 607, 713, 730, 833
ScaI AGTACT 3 cut(s) 176, 335, 376
SduI GDGCHC 3 cut(s) 44, 387, 511
SetI ASST 8 cut(s) 91, 97, 238, 244, 265, 511, 594, 655
SfaNI GCATC 4 cut(s) 6, 112, 259, 734
SfcI CTRYAG 1 cut(s) 796
SmiMI CAYNNNNRTG 3 cut(s) 450, 741, 779
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 2 cut(s) 694, 824
SsiI CCGC 2 cut(s) 355, 365
SstI GAGCTC 1 cut(s) 511
StyI CCWWGG 2 cut(s) 406, 663
TaaI ACNGT 4 cut(s) 392, 442, 488, 554
TaqI TCGA 3 cut(s) 545, 689, 832
TasI AATT 2 cut(s) 694, 824
TatI WGTACW 4 cut(s) 3, 174, 333, 374
TfiI GAWTC 1 cut(s) 514
TscAI CASTG 4 cut(s) 142, 301, 568, 796
TseI GCWGC 1 cut(s) 746
TspDTI ATGAA 2 cut(s) 434, 675
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 4 cut(s) 142, 301, 568, 796
XceI RCATGY 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
ZrmI AGTACT 3 cut(s) 176, 335, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.