Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013605

Physical Location & Seq

Genomic Coordinates Forward (+)

11311260 .. 11314164

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG078000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTACAGACCGGTGATGCTCATGGCCTCAGATTACCAGAGCACAACCCAAGATTCCTCCCGTTTTGGGTGTGAAGAATCCAAAAAACCCGAAACCACCACCAAAACCAGTACTAGCAGCAAAGGAAAATCAAGGAAGTCAGCTAAACCTAAAAGGCCAAAGCCCCAGAGAGGTGTTGGTGTGGCTCAGCTGGAGCGCCTCCGTCTCCAACAGAGAGGTGTGGGTGTGACCAAATTAACCCAAATGCCCCTCCCCCATATCCTACCTCAACCTCAACCTCAGACCCAAGTTGTCCAAAATGTTGGTTTTCCAGATCACCAGCAGCGCCAGTTTCAATACTACCCAAACCCAGAAACCCGCGCCGACCCGCTTCTCAGCATTCCGGTACTCTACGGTGCGTCCAACTACGATGGAGCCATGAGTACTGGCTCTAGTTTGGTGGGCTTGGACCGGACCGGTTTGTTGGTTCAGACAGTTAATGGGAATGGTGGTTCAGCTGGGTTTGGTTATGGGTACAATGTTCGTCTTCATAATGATGTTGGTGGGTTGGTTATGGATCCGAACCAGTACGGTGTCGTTGGGGCTGGGGCTCCGAATCGTGGGGCTGTGTATGAGATCTCGAACGAGCTCTCTTCAATACCAAAGATGAAGCAGCAACCCTCCTCTTCTTCTTCATCTGAATATTGCTGCTGTTGCAAGCAGAAGAAAAGATTCAATTGTGGAAACAAAATGGGTTTTGGGGAATCTCCGGCTGTCTTTCCGATGGTCAACAGTTCTGATCTTCCCGGATTCGACCAACAAAACATCCCAAATGTCCGGGTAGCTGGGGAAATCGGCGTTGGTTTCAATGCTGGTACTTACTTGGACCGCCGCTCCAGTCTTGTTGATGAGGTAATTAAACTAAATCACCACCAAAAAAAAAAAATCCTACATTTTGATTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NOZZLE

Protein Analysis

315

Amino Acids

34.43

Weight (kDa)

9.48

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05340 FvH4_3g04110
malus_domestica	MD03G1216800.v1.1 MD11G1234600.v1.1
prunus_persica	Prupe.4G192500_v2.0.a1 Prupe.6G133800_v2.0.a1 Prupe.6G133900_v2.0.a1 Prupe.8G142800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0255571
rosa_laevigata	RLG00000014830
rosa_multiflora	Rmu_sc0004935.1_g000041
rosa_roxburghii	Rroxscaffold_7G00209880
rosa_rugosa	Rorug05G0559500
rosa_samantha	Rh6AG078000 Rh6BG070100 Rh6CG068900 Rh6DG065800
rosa_wichuraiana	Rw6G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	873
AccII	CGCG	1 cut(s)	360
AciI	CCGC	4 cut(s)	358, 368, 868, 871
AclWI	GGATC	2 cut(s)	551, 564
AfaI	GTAC	7 cut(s)	5, 112, 387, 424, 515, 569, 856
AfiI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
AgeI	ACCGGT	2 cut(s)	10, 455
AgsI	TTSAA	5 cut(s)	335, 636, 715, 847, 943
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	5 cut(s)	143, 190, 497, 628, 824
AluI	AGCT	5 cut(s)	143, 190, 497, 628, 824
Alw21I	GWGCWC	2 cut(s)	44, 630
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	551, 564
AoxI	GGCC	2 cut(s)	24, 155
ApeKI	GCWGC	4 cut(s)	117, 322, 652, 687
AsiGI	ACCGGT	2 cut(s)	10, 455
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	3 cut(s)	198, 327, 362
AspS9I	GGNCC	3 cut(s)	448, 453, 865
AsuC2I	CCSGG	2 cut(s)	786, 818
AsuHPI	GGTGA	3 cut(s)	25, 308, 899
AvaII	GGWCC	3 cut(s)	448, 453, 865
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	2 cut(s)	592, 630
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	44, 630
BbvI	GCAGC	4 cut(s)	129, 334, 664, 674
BccI	CCATC	2 cut(s)	404, 757
BcnI	CCSGG	2 cut(s)	786, 818
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	114, 432
BfoI	RGCGCY	2 cut(s)	199, 328
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	5 cut(s)	118, 323, 653, 688, 871
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	5 cut(s)	119, 324, 654, 689, 872
BmcAI	AGTACT	2 cut(s)	112, 424
Bme1390I	CCNGG	2 cut(s)	786, 818
Bme18I	GGWCC	3 cut(s)	448, 453, 865
BmgT120I	GGNCC	3 cut(s)	448, 453, 865
BmiI	GGNNCC	3 cut(s)	415, 558, 591
BmrFI	CCNGG	2 cut(s)	786, 818
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	2 cut(s)	212, 859
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	786, 818
BsaWI	WCCGGW	4 cut(s)	10, 382, 450, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 170, 599
Bse118I	RCCGGY	2 cut(s)	10, 455
Bse1I	ACTGG	5 cut(s)	108, 328, 430, 565, 876
BseGI	GGATG	1 cut(s)	804
BseLI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
BseMII	CTCAG	4 cut(s)	42, 200, 293, 388
BseNI	ACTGG	5 cut(s)	108, 328, 430, 565, 876
BseRI	GAGGAG	1 cut(s)	652
BseXI	GCAGC	4 cut(s)	129, 334, 664, 674
BseYI	CCCAGC	3 cut(s)	497, 584, 824
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	26, 157
BshTI	ACCGGT	2 cut(s)	10, 455
BsiHKAI	GWGCWC	2 cut(s)	44, 630
BsiSI	CCGG	7 cut(s)	11, 383, 451, 456, 749, 786, 817
BslI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	26, 157
Bsp1286I	GDGCHC	3 cut(s)	44, 592, 630
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	313, 556, 615, 778
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	4 cut(s)	358, 368, 868, 871
BspANI	GGCC	2 cut(s)	26, 157
BspCNI	CTCAG	4 cut(s)	41, 199, 292, 387
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	415, 558, 591
BspPI	GGATC	2 cut(s)	551, 564
BsrBI	CCGCTC	1 cut(s)	873
BsrFI	RCCGGY	2 cut(s)	10, 455
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	108, 328, 430, 565, 876
BssAI	RCCGGY	2 cut(s)	10, 455
BssMI	GATC	4 cut(s)	313, 556, 615, 778
Bst4CI	ACNGT	4 cut(s)	395, 475, 572, 773
Bst6I	CTCTTC	2 cut(s)	637, 670
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	4 cut(s)	28, 186, 279, 374
BstF5I	GGATG	1 cut(s)	804
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	2 cut(s)	199, 328
BstHHI	GCGC	3 cut(s)	198, 327, 362
BstKTI	GATC	4 cut(s)	316, 559, 618, 781
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	4 cut(s)	313, 556, 615, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	693
BstSCI	CCNGG	2 cut(s)	784, 816
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	129, 334, 664, 674
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	2 cut(s)	556, 615
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	2 cut(s)	556, 615
BsuRI	GGCC	2 cut(s)	26, 157
BtsCI	GGATG	1 cut(s)	804
Cac8I	GCNNGC	1 cut(s)	698
CfoI	GCGC	3 cut(s)	198, 327, 362
Cfr10I	RCCGGY	2 cut(s)	10, 455
Cfr13I	GGNCC	3 cut(s)	448, 453, 865
CpoI	CGGWCCG	1 cut(s)	453
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
CspAI	ACCGGT	2 cut(s)	10, 455
CspI	CGGWCCG	1 cut(s)	453
CviAII	CATG	2 cut(s)	22, 418
CviQI	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
DdeI	CTNAG	4 cut(s)	28, 186, 279, 374
DpnI	GATC	4 cut(s)	315, 558, 617, 780
DpnII	GATC	4 cut(s)	313, 556, 615, 778
Eam1104I	CTCTTC	2 cut(s)	637, 670
EarI	CTCTTC	2 cut(s)	637, 670
Ecl136II	GAGCTC	1 cut(s)	628
Eco24I	GRGCYC	2 cut(s)	592, 630
Eco47I	GGWCC	3 cut(s)	448, 453, 865
Eco53kI	GAGCTC	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	628
EcoT38I	GRGCYC	2 cut(s)	592, 630
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	25, 421
FaiI	YATR	7 cut(s)	23, 258, 419, 510, 531, 554, 612
FatI	CATG	2 cut(s)	21, 417
FauI	CCCGC	2 cut(s)	365, 375
Fnu4HI	GCNGC	5 cut(s)	118, 323, 653, 688, 871
FokI	GGATG	1 cut(s)	791
FriOI	GRGCYC	2 cut(s)	592, 630
Fsp4HI	GCNGC	5 cut(s)	118, 323, 653, 688, 871
FspBI	CTAG	2 cut(s)	114, 432
GlaI	GCGC	3 cut(s)	197, 326, 361
GluI	GCNGC	5 cut(s)	118, 323, 653, 688, 871
GsaI	CCCAGC	3 cut(s)	501, 588, 828
GsuI	CTGGAG	2 cut(s)	212, 859
HaeII	RGCGCY	2 cut(s)	199, 328
HaeIII	GGCC	2 cut(s)	26, 157
HapII	CCGG	7 cut(s)	11, 383, 451, 456, 749, 786, 817
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	3 cut(s)	198, 327, 362
Hin1II	CATG	2 cut(s)	25, 421
Hin6I	GCGC	3 cut(s)	196, 325, 360
HinP1I	GCGC	3 cut(s)	196, 325, 360
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	6 cut(s)	53, 77, 595, 711, 743, 789
HpaII	CCGG	7 cut(s)	11, 383, 451, 456, 749, 786, 817
HphI	GGTGA	3 cut(s)	25, 308, 899
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	8 cut(s)	31, 282, 471, 561, 594, 679, 762, 778
Hpy188III	TCNNGA	2 cut(s)	311, 619
Hpy8I	GTNNAC	1 cut(s)	769
HpyCH4III	ACNGT	4 cut(s)	395, 475, 572, 773
HpyCH4V	TGCA	1 cut(s)	696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	693
HpyF3I	CTNAG	4 cut(s)	28, 186, 279, 374
Hsp92II	CATG	2 cut(s)	25, 421
HspAI	GCGC	3 cut(s)	196, 325, 360
Kzo9I	GATC	4 cut(s)	313, 556, 615, 778
LmnI	GCTCC	4 cut(s)	193, 413, 595, 878
Lsp1109I	GCAGC	4 cut(s)	129, 334, 664, 674
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	2 cut(s)	114, 432
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	315, 558, 617, 780
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	4 cut(s)	313, 556, 615, 778
MboII	GAAGA	8 cut(s)	86, 518, 624, 657, 660, 663, 715, 773
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	2 cut(s)	556, 615
MhlI	GDGCHC	3 cut(s)	44, 592, 630
MluCI	AATT	4 cut(s)	233, 715, 894, 943
MmeI	TCCRAC	2 cut(s)	232, 426
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	3 cut(s)	236, 477, 897
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	2 cut(s)	190, 497
MspI	CCGG	7 cut(s)	11, 383, 451, 456, 749, 786, 817
MspR9I	CCNGG	2 cut(s)	786, 818
MunI	CAATTG	1 cut(s)	715
Mva1269I	GAATGC	1 cut(s)	378
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	693
NciI	CCSGG	2 cut(s)	786, 818
NdeII	GATC	4 cut(s)	313, 556, 615, 778
NlaIII	CATG	2 cut(s)	25, 421
NlaIV	GGNNCC	3 cut(s)	415, 558, 591
NmuCI	GTSAC	1 cut(s)	226
PctI	GAATGC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	6 cut(s)	53, 77, 595, 711, 743, 789
PfoI	TCCNGGA	1 cut(s)	784
PinAI	ACCGGT	2 cut(s)	10, 455
PkrI	GCNGC	5 cut(s)	119, 324, 654, 689, 872
Psp124BI	GAGCTC	1 cut(s)	630
PspFI	CCCAGC	3 cut(s)	497, 584, 824
PspN4I	GGNNCC	3 cut(s)	415, 558, 591
PspPI	GGNCC	3 cut(s)	448, 453, 865
PsuI	RGATCY	2 cut(s)	556, 615
PvuII	CAGCTG	2 cut(s)	190, 497
RsaI	GTAC	7 cut(s)	5, 112, 387, 424, 515, 569, 856
RsaNI	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
RseI	CAYNNNNRTG	1 cut(s)	534
Rsr2I	CGGWCCG	1 cut(s)	453
RsrII	CGGWCCG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	236, 477, 897
SatI	GCNGC	5 cut(s)	118, 323, 653, 688, 871
Sau3AI	GATC	4 cut(s)	313, 556, 615, 778
Sau96I	GGNCC	3 cut(s)	448, 453, 865
ScaI	AGTACT	2 cut(s)	112, 424
ScrFI	CCNGG	2 cut(s)	786, 818
SduI	GDGCHC	3 cut(s)	44, 592, 630
SfaNI	GCATC	1 cut(s)	6
SinI	GGWCC	3 cut(s)	448, 453, 865
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	4 cut(s)	233, 715, 894, 943
SsiI	CCGC	4 cut(s)	358, 368, 868, 871
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	2 cut(s)	114, 432
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	784, 816
TaaI	ACNGT	4 cut(s)	395, 475, 572, 773
TaqI	TCGA	2 cut(s)	620, 792
TasI	AATT	4 cut(s)	233, 715, 894, 943
TatI	WGTACW	3 cut(s)	3, 110, 422
TauI	GCSGC	1 cut(s)	873
TfiI	GAWTC	6 cut(s)	53, 77, 595, 711, 743, 789
Tru1I	TTAA	3 cut(s)	236, 477, 897
Tru9I	TTAA	3 cut(s)	236, 477, 897
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	4 cut(s)	117, 322, 652, 687
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	518, 662, 663
TspGWI	ACGGA	1 cut(s)	191
VpaK11BI	GGWCC	3 cut(s)	448, 453, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	2 cut(s)	114, 432
ZrmI	AGTACT	2 cut(s)	112, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.