Prupe.4G192500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013605
Physical Location & Seq
Forward (+)
11586236 .. 11588459
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G192500.1

Sequence Viewer

Length: 1074 bp
ATGGCTACGCCAATGCTGCTCATGGCCTCAGAACAGAGCACAACACAAGAACCCACCAAAACCCTTGTCGGGTTCTACGAGGAATCCAAACCCGAGTCCACCAAATCCACCAAGGGCACTAAGAAATCCGGCAAAGCCTCAAACTCTAAAAAGCAACCACAAAGAGGTCTTGGTGTTGCTCAGCTGGAGCGCCTGAGGCTCCAAGACCGCTGGAAGAAAATGACGGAACTGCCCCAACTGCAACCCCAACCCCAAGTTGTCAATCTTCCTGATCATCATCAGTACCAGAACTTTCAACACCAGAACCCCACCAGAACCCTACCCGGCCCGCTTGCCAGTGTTCCAGTACAGTATGGTGCATCCAGCTACAATGGACCACTGCTGATCAAGGGCTCTGGTGGTAATGGCTTGTTTGGTTTTGTGGGTCAGAGGTTTGGGAATGGTTCTGGGTTTGGGTATGCCGGAGGTAATAATTTGGTGGTGGACCTAAACCCGAGTCCGTATGCAATCGGGGCTCCGGAGAGGTTTGAAGTTGGGGCTGTGTATGAGACCTCGAAAGAGCTCTCTTCAATACCAAAGGTTCAACCTTTGTCTTCTGATTGCTGTGATATCTGCTGCAAGAAGCAGAAGAAGAGGCTCAATAGTCGGAATTACATGGGCTTAAACGGCAGGAGTGGCAAATCTGAGGCTAGTTTACCAATCAACTGTTCTGGTTTTCTCAGATTGAACCCGGAAGCCGGTGGTGGCCAAGTGGTGGGGAGAAGTACAGCTCACTCGGGCTACCGCAATGATGATCAGGGGGTAGAGGTTAGGGCAGTGCACAGAAAAGGGAGCTCAGCTGGTGGTGGTATTTTCATGGAATATGATTTCTTTCCAGCTGCTGGTGGCAAAAGTAGTGAGATGAGAGGAGGCACTTGTCCCAAGGAGCCAGAGATGTGGCAAACAGCAGAAGCTTCAGTTTCAGTGGGGAGCCATGAAGAACCTTCTGATATTACTGCTTCTAGTTATGGCTATGGAATTGGGGCTGACAGTTATCATAATCCTGTTGATTTGTCACTCAAGCTTTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NOZZLE

Protein Analysis

358

Amino Acids

38.35

Weight (kDa)

8.97

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 754, 881
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 3 cut(s) 208, 329, 784
AcoI YGGCCR 1 cut(s) 745
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 3 cut(s) 284, 348, 766
AfiI CCNNNNNNNGG 5 cut(s) 69, 164, 737, 754, 881
AgsI TTSAA 5 cut(s) 296, 530, 570, 584, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 691, 723
AluBI AGCT 9 cut(s) 184, 366, 562, 770, 834, 839, 878, 953, 1063
AluI AGCT 9 cut(s) 184, 366, 562, 770, 834, 839, 878, 953, 1063
Alw21I GWGCWC 4 cut(s) 41, 564, 822, 836
Alw26I GTCTC 1 cut(s) 542
Alw44I GTGCAC 1 cut(s) 818
AlwNI CAGNNNCTG 1 cut(s) 881
Ama87I CYCGRG 3 cut(s) 92, 493, 775
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 3 cut(s) 24, 325, 745
ApaLI GTGCAC 1 cut(s) 818
ApeKI GCWGC 3 cut(s) 16, 615, 878
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 326, 374, 484
AsuC2I CCSGG 2 cut(s) 324, 731
AvaI CYCGRG 3 cut(s) 92, 493, 775
AvaII GGWCC 2 cut(s) 374, 484
AxyI CCTNAGG 1 cut(s) 194
BaeGI GKGCMC 2 cut(s) 119, 822
BalI TGGCCA 1 cut(s) 747
BanII GRGCYC 4 cut(s) 395, 517, 564, 836
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 4 cut(s) 41, 564, 822, 836
BbvI GCAGC 3 cut(s) 3, 602, 865
BceAI ACGGC 1 cut(s) 682
BclI TGATCA 3 cut(s) 271, 384, 793
BcnI CCSGG 2 cut(s) 324, 731
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 690, 1002
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 3 cut(s) 17, 616, 879
BlpI GCTNAGC 2 cut(s) 180, 835
BlsI GCNGC 3 cut(s) 18, 617, 880
Bme1390I CCNGG 2 cut(s) 324, 731
Bme18I GGWCC 2 cut(s) 374, 484
BmeT110I CYCGRG 3 cut(s) 92, 493, 775
BmgT120I GGNCC 3 cut(s) 326, 374, 484
BmiI GGNNCC 4 cut(s) 200, 516, 927, 971
BmrFI CCNGG 2 cut(s) 324, 731
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 206
Bpu1102I GCTNAGC 2 cut(s) 180, 835
BpuEI CTTGAG 1 cut(s) 1043
BpuMI CCSGG 2 cut(s) 324, 731
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 2 cut(s) 111, 921
BsaWI WCCGGW 1 cut(s) 517
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 164, 737, 754, 881
Bse118I RCCGGY 1 cut(s) 737
Bse1I ACTGG 2 cut(s) 336, 344
Bse21I CCTNAGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 793
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 517
BseDI CCNNGG 2 cut(s) 111, 921
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 5 cut(s) 69, 164, 737, 754, 881
BseMI GCAATG 1 cut(s) 793
BseMII CTCAG 6 cut(s) 42, 185, 194, 675, 733, 849
BseNI ACTGG 2 cut(s) 336, 344
BseRI GAGGAG 1 cut(s) 921
BseSI GKGCMC 2 cut(s) 119, 822
BseXI GCAGC 3 cut(s) 3, 602, 865
BshFI GGCC 3 cut(s) 26, 327, 747
BsiHKAI GWGCWC 4 cut(s) 41, 564, 822, 836
BsiHKCI CYCGRG 3 cut(s) 92, 493, 775
BsiSI CCGG 6 cut(s) 129, 324, 462, 518, 731, 738
BslFI GGGAC 1 cut(s) 903
BslI CCNNNNNNNGG 5 cut(s) 69, 164, 737, 754, 881
BsmAI GTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 903
BsnI GGCC 3 cut(s) 26, 327, 747
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 3 cut(s) 92, 493, 775
Bsp1286I GDGCHC 7 cut(s) 41, 119, 395, 517, 564, 822, 836
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 3 cut(s) 271, 384, 793
Bsp1720I GCTNAGC 2 cut(s) 180, 835
BspACI CCGC 3 cut(s) 208, 329, 784
BspANI GGCC 3 cut(s) 26, 327, 747
BspCNI CTCAG 6 cut(s) 41, 186, 193, 676, 732, 848
BspEI TCCGGA 1 cut(s) 517
BspLI GGNNCC 4 cut(s) 200, 516, 927, 971
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 793
BsrFI RCCGGY 1 cut(s) 737
BsrI ACTGG 2 cut(s) 336, 344
BssAI RCCGGY 1 cut(s) 737
BssECI CCNNGG 2 cut(s) 111, 921
BssMI GATC 3 cut(s) 271, 384, 793
BssT1I CCWWGG 2 cut(s) 111, 921
Bst4CI ACNGT 3 cut(s) 351, 707, 1031
Bst6I CTCTTC 2 cut(s) 571, 626
BstC8I GCNNGC 2 cut(s) 329, 333
BstDEI CTNAG 7 cut(s) 28, 120, 180, 194, 684, 719, 835
BstF5I GGATG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 274, 387, 796
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 3 cut(s) 271, 384, 793
BstMWI GCNNNNNNNGC 6 cut(s) 16, 196, 238, 512, 666, 675
BstSCI CCNGG 2 cut(s) 322, 729
BstSLI GKGCMC 2 cut(s) 119, 822
BstV1I GCAGC 3 cut(s) 3, 602, 865
BstV2I GAAGAC 1 cut(s) 585
BstXI CCANNNNNNTGG 1 cut(s) 936
Bsu36I CCTNAGG 1 cut(s) 194
BsuRI GGCC 3 cut(s) 26, 327, 747
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 2 cut(s) 377, 822
BtsIMutI CAGTG 4 cut(s) 343, 377, 822, 969
Cac8I GCNNGC 2 cut(s) 329, 333
CaiI CAGNNNCTG 1 cut(s) 881
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 3 cut(s) 326, 374, 484
Csp6I GTAC 3 cut(s) 283, 347, 765
CviAII CATG 4 cut(s) 22, 655, 856, 974
CviQI GTAC 3 cut(s) 283, 347, 765
DdeI CTNAG 7 cut(s) 28, 120, 180, 194, 684, 719, 835
DpnI GATC 3 cut(s) 273, 386, 795
DpnII GATC 3 cut(s) 271, 384, 793
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 2 cut(s) 571, 626
EarI CTCTTC 2 cut(s) 571, 626
Ecl136II GAGCTC 2 cut(s) 562, 834
Eco130I CCWWGG 2 cut(s) 111, 921
Eco24I GRGCYC 4 cut(s) 395, 517, 564, 836
Eco31I GGTCTC 1 cut(s) 542
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 2 cut(s) 374, 484
Eco53kI GAGCTC 2 cut(s) 562, 834
Eco57I CTGAAG 1 cut(s) 939
Eco81I CCTNAGG 1 cut(s) 194
Eco88I CYCGRG 3 cut(s) 92, 493, 775
EcoICRI GAGCTC 2 cut(s) 562, 834
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 111, 921
EcoT38I GRGCYC 4 cut(s) 395, 517, 564, 836
ErhI CCWWGG 2 cut(s) 111, 921
FaeI CATG 4 cut(s) 25, 658, 859, 977
FaqI GGGAC 1 cut(s) 903
FatI CATG 4 cut(s) 21, 654, 855, 973
FauI CCCGC 1 cut(s) 336
FbaI TGATCA 3 cut(s) 271, 384, 793
Fnu4HI GCNGC 3 cut(s) 17, 616, 879
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 4 cut(s) 395, 517, 564, 836
Fsp4HI GCNGC 3 cut(s) 17, 616, 879
FspBI CTAG 2 cut(s) 690, 1002
GlaI GCGC 1 cut(s) 191
GluI GCNGC 3 cut(s) 17, 616, 879
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 3 cut(s) 26, 327, 747
HapII CCGG 6 cut(s) 129, 324, 462, 518, 731, 738
HhaI GCGC 1 cut(s) 192
Hin1II CATG 4 cut(s) 25, 658, 859, 977
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HindIII AAGCTT 2 cut(s) 951, 1061
HinfI GANTC 3 cut(s) 83, 95, 496
HpaII CCGG 6 cut(s) 129, 324, 462, 518, 731, 738
Hpy166II GTNNAC 4 cut(s) 99, 484, 695, 820
Hpy188I TCNGA 7 cut(s) 31, 429, 598, 648, 685, 722, 988
Hpy188III TCNNGA 2 cut(s) 269, 518
Hpy8I GTNNAC 4 cut(s) 99, 484, 695, 820
HpyAV CCTTC 1 cut(s) 993
HpyCH4III ACNGT 3 cut(s) 351, 707, 1031
HpyCH4V TGCA 5 cut(s) 241, 359, 506, 618, 820
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 196, 238, 512, 666, 675
HpyF3I CTNAG 7 cut(s) 28, 120, 180, 194, 684, 719, 835
Hsp92II CATG 4 cut(s) 25, 658, 859, 977
HspAI GCGC 1 cut(s) 190
Kpn2I TCCGGA 1 cut(s) 517
Ksp22I TGATCA 3 cut(s) 271, 384, 793
Kzo9I GATC 3 cut(s) 271, 384, 793
LmnI GCTCC 6 cut(s) 187, 204, 520, 831, 925, 969
Lsp1109I GCAGC 3 cut(s) 3, 602, 865
LweI GCATC 1 cut(s) 368
MaeI CTAG 2 cut(s) 690, 1002
MaeIII GTNAC 1 cut(s) 1053
MalI GATC 3 cut(s) 273, 386, 795
MboI GATC 3 cut(s) 271, 384, 793
MboII GAAGA 7 cut(s) 226, 257, 558, 585, 640, 643, 989
MhlI GDGCHC 7 cut(s) 41, 119, 395, 517, 564, 822, 836
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 3 cut(s) 472, 649, 1017
MluNI TGGCCA 1 cut(s) 747
MlyI GAGTC 2 cut(s) 104, 505
MmeI TCCRAC 1 cut(s) 626
Mox20I TGGCCA 1 cut(s) 747
MroI TCCGGA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 747
MseI TTAA 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 747
MspA1I CMGCKG 4 cut(s) 184, 210, 839, 878
MspI CCGG 6 cut(s) 129, 324, 462, 518, 731, 738
MspR9I CCNGG 2 cut(s) 324, 731
MwoI GCNNNNNNNGC 6 cut(s) 16, 196, 238, 512, 666, 675
NciI CCSGG 2 cut(s) 324, 731
NdeII GATC 3 cut(s) 271, 384, 793
NlaIII CATG 4 cut(s) 25, 658, 859, 977
NlaIV GGNNCC 4 cut(s) 200, 516, 927, 971
NmuCI GTSAC 1 cut(s) 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 2 cut(s) 754, 881
PkrI GCNGC 3 cut(s) 18, 617, 880
PleI GAGTC 2 cut(s) 103, 504
PpsI GAGTC 2 cut(s) 103, 504
Psp124BI GAGCTC 2 cut(s) 564, 836
PspN4I GGNNCC 4 cut(s) 200, 516, 927, 971
PspPI GGNCC 3 cut(s) 326, 374, 484
PstNI CAGNNNCTG 1 cut(s) 881
PvuII CAGCTG 3 cut(s) 184, 839, 878
RsaI GTAC 3 cut(s) 284, 348, 766
RsaNI GTAC 3 cut(s) 283, 347, 765
SacI GAGCTC 2 cut(s) 564, 836
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 3 cut(s) 17, 616, 879
Sau3AI GATC 3 cut(s) 271, 384, 793
Sau96I GGNCC 3 cut(s) 326, 374, 484
SchI GAGTC 2 cut(s) 104, 505
ScrFI CCNGG 2 cut(s) 324, 731
SduI GDGCHC 7 cut(s) 41, 119, 395, 517, 564, 822, 836
SfaNI GCATC 1 cut(s) 368
SinI GGWCC 2 cut(s) 374, 484
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
Sse9I AATT 3 cut(s) 472, 649, 1017
SsiI CCGC 3 cut(s) 208, 329, 784
SspMI CTAG 2 cut(s) 690, 1002
SstI GAGCTC 2 cut(s) 564, 836
StyD4I CCNGG 2 cut(s) 322, 729
StyI CCWWGG 2 cut(s) 111, 921
TaaI ACNGT 3 cut(s) 351, 707, 1031
TaqI TCGA 1 cut(s) 554
TasI AATT 3 cut(s) 472, 649, 1017
TatI WGTACW 2 cut(s) 346, 764
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TscAI CASTG 4 cut(s) 343, 384, 822, 969
TseFI GTSAC 1 cut(s) 1053
TseI GCWGC 3 cut(s) 16, 615, 878
Tsp45I GTSAC 1 cut(s) 1053
TspDTI ATGAA 3 cut(s) 844, 990, 1056
TspGWI ACGGA 2 cut(s) 239, 489
TspRI CASTG 4 cut(s) 343, 384, 822, 969
Van91I CCANNNNNTGG 2 cut(s) 754, 881
VneI GTGCAC 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 374, 484
XspI CTAG 2 cut(s) 690, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.