Prupe.8G142800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
15991509 .. 15993593
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G142800.1

Sequence Viewer

Length: 243 bp
ATGGTTCTGAAAACTGATCGGGAAGAATCTGAGACATCTATCTCCTCGTTCTCAACCTCTAACAGCCTCCAGGTAATCCATTTCTGCAGACTTGTATGTCAATATAGTTTTTTTGCCGCTCAATTTCAGCTTAGAGTGTTCCCTCTGGAGAGGCCAGGCTTAGGGTTGAAGGAAATTGCACAAGAGTACAATCTGAACTGGAATTCTTCTAACACTGAAGCGGGCAGTCATGTAGCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.12

Weight (kDa)

5.54

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 119
AciI CCGC 2 cut(s) 117, 221
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 2 cut(s) 69, 154
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 26
AoxI GGCC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 71, 156
BcoDI GTCTC 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 71, 156
BmrFI CCNGG 2 cut(s) 71, 156
BpmI CTGGAG 2 cut(s) 53, 167
Bpu10I CCTNAGC 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 71, 156
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 34
BshFI GGCC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 2 cut(s) 117, 221
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 203
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 71, 156
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 30, 131, 160
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 71, 156
BstSCI CCNGG 2 cut(s) 69, 154
BstSFI CTRYAG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 230
CviJI RGCY 4 cut(s) 66, 130, 154, 159
CviKI_1 RGCY 4 cut(s) 66, 130, 154, 159
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 30, 131, 160
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DrdI GACNNNNNNGTC 1 cut(s) 96
DseDI GACNNNNNNGTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 2 cut(s) 69, 154
FaeI CATG 1 cut(s) 233
FaiI YATR 4 cut(s) 97, 105, 231, 238
FatI CATG 1 cut(s) 229
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 2 cut(s) 53, 167
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 1 cut(s) 233
HinfI GANTC 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 9, 31, 195
Hpy188III TCNNGA 2 cut(s) 20, 146
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 87, 179
HpyF3I CTNAG 3 cut(s) 30, 131, 160
Hsp92II CATG 1 cut(s) 233
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 56, 83, 131, 141, 168, 184
MalI GATC 1 cut(s) 18
MbiI CCGCTC 1 cut(s) 119
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 35, 198
MluCI AATT 3 cut(s) 122, 174, 202
MnlI CCTC 5 cut(s) 55, 67, 77, 144, 153
MspR9I CCNGG 2 cut(s) 71, 156
MvaI CCWGG 2 cut(s) 71, 156
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 69, 154
PspGI CCWGG 2 cut(s) 69, 154
PstI CTGCAG 1 cut(s) 89
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 71, 156
SetI ASST 3 cut(s) 59, 75, 132
SfcI CTRYAG 1 cut(s) 85
Sse9I AATT 3 cut(s) 122, 174, 202
SsiI CCGC 2 cut(s) 117, 221
StyD4I CCNGG 2 cut(s) 69, 154
TasI AATT 3 cut(s) 122, 174, 202
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 220
TspRI CASTG 1 cut(s) 220
XapI RAATTY 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.