Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013605

Physical Location & Seq

Genomic Coordinates Reverse (-)

60142712 .. 60144709

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCCCTCCCCCATATCCTACCCCAACCTCAACCTCAGACCCAAGTTGTCCAAAATGTTGGTTTTCCAGATCACCAGCAGCGCCAGTTTCAATACTACCCAAACCCAGAAACCCGCGCCGACCCGCTTCTCAGCATTCCTGTACTCTACGGTGCGTCCAACTATGATGGAGCCATGAGTACTGGCTCTGGTTTGGTGGGCTTGGACCGTACCGGTTTGTTGGTTCAGACAGTTAATGGGAATGGTGGTTCAGCTGGGTTTGGTTATGGGTACAATGTTCGTCTTCATAATGATGTTGGTGGGTTGGTTATGGATCCGAACCAGTACGGTGTCGTTGGAGCTGGGGCTTCGAATCGTGGGGCTGTGTATGAGATCTCGAACGAGCTCTCTTCAACACCAAAGATGAAGCAGCAACCCCCGTCTTCTTCTTCATCTGAATATTGCTGCTGTTGCAAGCAGAAGAAGAGATTCAATTGTGGAAACAACATGGGTTTTGGGGAATCTCCGGCTGTCTTTCCTATGGTCAACAGTTCCGATCTTCCCGGATTCGACCCACAAAACATCCCAAATGTCCGGCTAGCTGGTGAAACCGGCGGTGGTTTCAATGGTGGTACTTACTTGGGCCGCCGCTCCAGTCTTGTTGATGAGAGTGTGGAGGTTAGGGCAGTTCACAGGAAGGGGAGACAAGCAGGTGGTGATATCATGAAGGAGTATGAATTCTTTCCTGATCACAACAACAACAATTCTTCTTCAGTAGTCTCATCAGGCACATATCCCATGGAGCATGACATAGTTGCTTCATCAACTAATTCTTCTTCAGTTGGTAGATCATCAGAAGCTTCTGATCAACATCTTGGTGCTGCTTGTATTGAGGGGGCTGACATGATGATGATGATGATGAGCAGTGGCTATAGTCCTGTTGATTTGTCACTCAAACTGTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NOZZLE

Protein Analysis

315

Amino Acids

33.62

Weight (kDa)

5.47

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05340 FvH4_3g04110
malus_domestica	MD03G1216800.v1.1 MD11G1234600.v1.1
prunus_persica	Prupe.4G192500_v2.0.a1 Prupe.6G133800_v2.0.a1 Prupe.6G133900_v2.0.a1 Prupe.8G142800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0255571
rosa_laevigata	RLG00000014830
rosa_multiflora	Rmu_sc0004935.1_g000041
rosa_roxburghii	Rroxscaffold_7G00209880
rosa_rugosa	Rorug05G0559500
rosa_samantha	Rh6AG078000 Rh6BG070100 Rh6CG068900 Rh6DG065800
rosa_wichuraiana	Rw6G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	680
AccBSI	CCGCTC	1 cut(s)	630
AccII	CGCG	1 cut(s)	117
AciI	CCGC	5 cut(s)	115, 125, 594, 625, 628
AclWI	GGATC	2 cut(s)	308, 321
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	2 cut(s)	735, 801
AfaI	GTAC	6 cut(s)	144, 181, 211, 272, 326, 613
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	92, 393, 472, 604
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
AluBI	AGCT	5 cut(s)	254, 341, 385, 581, 839
AluI	AGCT	5 cut(s)	254, 341, 385, 581, 839
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	676, 763
AlwI	GGATC	2 cut(s)	308, 321
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	4 cut(s)	79, 409, 444, 860
ApoI	RAATTY	1 cut(s)	716
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	2 cut(s)	467, 720
AspLEI	GCGC	2 cut(s)	84, 119
AspS9I	GGNCC	2 cut(s)	205, 622
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	3 cut(s)	65, 596, 707
AsuII	TTCGAA	1 cut(s)	350
AsuNHI	GCTAGC	1 cut(s)	577
AvaII	GGWCC	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	2 cut(s)	275, 414
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	4 cut(s)	91, 421, 431, 847
BccI	CCATC	1 cut(s)	161
BclI	TGATCA	2 cut(s)	727, 844
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	676, 763
BfaI	CTAG	2 cut(s)	578, 946
BfmI	CTRYAG	1 cut(s)	910
BfoI	RGCGCY	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	680
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	6 cut(s)	80, 410, 445, 625, 628, 861
BlsI	GCNGC	6 cut(s)	81, 411, 446, 626, 629, 862
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	205, 622
BmiI	GGNNCC	2 cut(s)	172, 315
BmrFI	CCNGG	1 cut(s)	543
BmtI	GCTAGC	1 cut(s)	581
BpiI	GAAGAC	2 cut(s)	275, 414
BpmI	CTGGAG	1 cut(s)	616
Bpu14I	TTCGAA	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	849
BsaJI	CCNNGG	1 cut(s)	777
BsaWI	WCCGGW	1 cut(s)	212
Bse118I	RCCGGY	2 cut(s)	212, 590
Bse1I	ACTGG	4 cut(s)	85, 187, 322, 633
Bse8I	GATNNNNATC	1 cut(s)	849
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	1 cut(s)	561
BseJI	GATNNNNATC	1 cut(s)	849
BseMII	CTCAG	2 cut(s)	50, 145
BseNI	ACTGG	4 cut(s)	85, 187, 322, 633
BseXI	GCAGC	4 cut(s)	91, 421, 431, 847
BseYI	CCCAGC	2 cut(s)	254, 341
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	624
BshTI	ACCGGT	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	5 cut(s)	213, 506, 543, 574, 591
BsmAI	GTCTC	2 cut(s)	676, 763
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	624
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	5 cut(s)	115, 125, 594, 625, 628
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	49, 144
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	172, 315
BspMI	ACCTGC	1 cut(s)	680
BspOI	GCTAGC	1 cut(s)	581
BspPI	GGATC	2 cut(s)	308, 321
BspT104I	TTCGAA	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	630
BsrFI	RCCGGY	2 cut(s)	212, 590
BsrI	ACTGG	4 cut(s)	85, 187, 322, 633
BssAI	RCCGGY	2 cut(s)	212, 590
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
BssT1I	CCWWGG	1 cut(s)	777
Bst4CI	ACNGT	6 cut(s)	152, 209, 232, 329, 530, 939
Bst6I	CTCTTC	2 cut(s)	394, 458
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	455, 579
BstDEI	CTNAG	2 cut(s)	36, 131
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 119
BstKTI	GATC	7 cut(s)	73, 316, 375, 538, 730, 830, 847
BstMAI	GTCTC	2 cut(s)	676, 763
BstMBI	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	910
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	4 cut(s)	91, 421, 431, 847
BstV2I	GAAGAC	2 cut(s)	275, 414
BstX2I	RGATCY	2 cut(s)	313, 372
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	2 cut(s)	313, 372
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	561
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	1 cut(s)	910
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	455, 579
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	2 cut(s)	84, 119
Cfr10I	RCCGGY	2 cut(s)	212, 590
Cfr13I	GGNCC	2 cut(s)	205, 622
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	6 cut(s)	143, 180, 210, 271, 325, 612
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	6 cut(s)	175, 487, 703, 778, 785, 883
CviQI	GTAC	6 cut(s)	143, 180, 210, 271, 325, 612
DdeI	CTNAG	2 cut(s)	36, 131
DpnI	GATC	7 cut(s)	72, 315, 374, 537, 729, 829, 846
DpnII	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
Eam1104I	CTCTTC	2 cut(s)	394, 458
EarI	CTCTTC	2 cut(s)	394, 458
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	735, 801
EcoICRI	GAGCTC	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	6 cut(s)	178, 490, 706, 781, 788, 886
FatI	CATG	6 cut(s)	174, 486, 702, 777, 784, 882
FauI	CCCGC	2 cut(s)	122, 132
FbaI	TGATCA	2 cut(s)	727, 844
Fnu4HI	GCNGC	6 cut(s)	80, 410, 445, 625, 628, 861
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	6 cut(s)	80, 410, 445, 625, 628, 861
FspBI	CTAG	2 cut(s)	578, 946
GlaI	GCGC	2 cut(s)	83, 118
GluI	GCNGC	6 cut(s)	80, 410, 445, 625, 628, 861
GsaI	CCCAGC	2 cut(s)	258, 345
GsuI	CTGGAG	1 cut(s)	616
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	5 cut(s)	213, 506, 543, 574, 591
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	2 cut(s)	84, 119
Hin1II	CATG	6 cut(s)	178, 490, 706, 781, 788, 886
Hin6I	GCGC	2 cut(s)	82, 117
HinP1I	GCGC	2 cut(s)	82, 117
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	837
HinfI	GANTC	4 cut(s)	352, 468, 500, 546
HpaII	CCGG	5 cut(s)	213, 506, 543, 574, 591
HphI	GGTGA	3 cut(s)	65, 596, 707
Hpy166II	GTNNAC	2 cut(s)	526, 670
Hpy188I	TCNGA	7 cut(s)	39, 228, 318, 436, 535, 835, 844
Hpy188III	TCNNGA	4 cut(s)	68, 376, 703, 725
Hpy8I	GTNNAC	2 cut(s)	526, 670
HpyAV	CCTTC	2 cut(s)	670, 700
HpyCH4III	ACNGT	6 cut(s)	152, 209, 232, 329, 530, 939
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	2 cut(s)	36, 131
Hsp92II	CATG	6 cut(s)	178, 490, 706, 781, 788, 886
HspAI	GCGC	2 cut(s)	82, 117
Ksp22I	TGATCA	2 cut(s)	727, 844
Kzo9I	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
LmnI	GCTCC	4 cut(s)	170, 338, 635, 781
Lsp1109I	GCAGC	4 cut(s)	91, 421, 431, 847
MaeI	CTAG	2 cut(s)	578, 946
MaeIII	GTNAC	1 cut(s)	927
MalI	GATC	7 cut(s)	72, 315, 374, 537, 729, 829, 846
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
MfeI	CAATTG	1 cut(s)	472
MflI	RGATCY	2 cut(s)	313, 372
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	4 cut(s)	472, 716, 742, 808
MmeI	TCCRAC	2 cut(s)	183, 316
MnlI	CCTC	5 cut(s)	17, 39, 45, 649, 865
MroXI	GAANNNNTTC	2 cut(s)	467, 720
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	3 cut(s)	291, 855, 887
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	5 cut(s)	213, 506, 543, 574, 591
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	135
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	543
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	6 cut(s)	178, 490, 706, 781, 788, 886
NlaIV	GGNNCC	2 cut(s)	172, 315
NmuCI	GTSAC	1 cut(s)	927
NspV	TTCGAA	1 cut(s)	350
PagI	TCATGA	1 cut(s)	702
PaqCI	CACCTGC	1 cut(s)	680
PctI	GAATGC	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	467, 720
PfeI	GAWTC	4 cut(s)	352, 468, 500, 546
PfoI	TCCNGGA	1 cut(s)	541
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	81, 411, 446, 626, 629, 862
Psp124BI	GAGCTC	1 cut(s)	387
PspFI	CCCAGC	2 cut(s)	254, 341
PspN4I	GGNNCC	2 cut(s)	172, 315
PspPI	GGNCC	2 cut(s)	205, 622
PsuI	RGATCY	2 cut(s)	313, 372
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	6 cut(s)	144, 181, 211, 272, 326, 613
RsaNI	GTAC	6 cut(s)	143, 180, 210, 271, 325, 612
RseI	CAYNNNNRTG	3 cut(s)	291, 855, 887
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	6 cut(s)	80, 410, 445, 625, 628, 861
Sau3AI	GATC	7 cut(s)	70, 313, 372, 535, 727, 827, 844
Sau96I	GGNCC	2 cut(s)	205, 622
ScaI	AGTACT	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	9 cut(s)	31, 37, 256, 343, 387, 583, 660, 694, 841
SfcI	CTRYAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	3 cut(s)	291, 855, 887
Sse9I	AATT	4 cut(s)	472, 716, 742, 808
SsiI	CCGC	5 cut(s)	115, 125, 594, 625, 628
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	2 cut(s)	578, 946
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	6 cut(s)	152, 209, 232, 329, 530, 939
TaqI	TCGA	3 cut(s)	350, 377, 549
TasI	AATT	4 cut(s)	472, 716, 742, 808
TatI	WGTACW	2 cut(s)	142, 179
TauI	GCSGC	2 cut(s)	627, 630
TfiI	GAWTC	4 cut(s)	352, 468, 500, 546
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	910
TseFI	GTSAC	1 cut(s)	927
TseI	GCWGC	4 cut(s)	79, 409, 444, 860
Tsp45I	GTSAC	1 cut(s)	927
TspDTI	ATGAA	6 cut(s)	275, 419, 420, 719, 729, 789
TspRI	CASTG	1 cut(s)	910
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	716
XmnI	GAANNNNTTC	2 cut(s)	467, 720
XspI	CTAG	2 cut(s)	578, 946
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.