Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013605

Physical Location & Seq

Genomic Coordinates Reverse (-)

10493492 .. 10495441

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G133800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTTGTCATACTGAGAAATAATAAAACCCCCAAATCCCAAACCCCAAACTGCTGCCTTCCATCCATATTGGTCTCAGTTCTCTGGAAAAGTAAAAGGTATGCTTTGACTGTTGTTCTTGGTATTTTGATGGGTCAGAGGGTTGGGAATGGTTCTGGGTTTGGTTTTGTTGGAGGTAATAATTTGGTGGTGGACCTAAACCCGAGTCCGTACGCAATCAGACCTCCAGATCCGAGGTTTGAAGTTGGGGCTATGTATGAGACCTCGAAAGAGGTCTCTTCAATGCCAAAGGTTCAACCTTTGTCTTCTGGTGGCCAAGTGGTGGGGAGAAGTGCATCTTCCTTGGGCTTCCGCAATGAGGATAAGGGTGTAGAGGTTTGGGCAGTGCACAGAAAGGAGAGCTCAGCTGGTGGTGGTATTTTCATGGAATATGAAATTGTGCACACCTGCTCTCTGGATGAAACAGAGCTTCACAATTGCTTACAAGAACAGGAGTCTGTTGGTCTTCTGGACAGAGGGCCTATCTGTCAACATACTCATGTACCCCTTTTTATTTCGTGCTCTAGCTACTTGTATAAATGTCACAAAGAAGAGAAATATTCAATACTAAATAGGTTGAGAGTGTTCCATCTGGAGAGGCCAGGCTTAGGATTGAAGGAAATTGCACAAGAATACAATCTGAACTGGGATTCTTCTAACACTGAAGTTGGCAGTAGCATATTGAATTTGGAATTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NOZZLE

Protein Analysis

247

Amino Acids

27.33

Weight (kDa)

6.66

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05340 FvH4_3g04110
malus_domestica	MD03G1216800.v1.1 MD11G1234600.v1.1
prunus_persica	Prupe.4G192500_v2.0.a1 Prupe.6G133800_v2.0.a1 Prupe.6G133900_v2.0.a1 Prupe.8G142800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0255571
rosa_laevigata	RLG00000014830
rosa_multiflora	Rmu_sc0004935.1_g000041
rosa_roxburghii	Rroxscaffold_7G00209880
rosa_rugosa	Rorug05G0559500
rosa_samantha	Rh6AG078000 Rh6BG070100 Rh6CG068900 Rh6DG065800
rosa_wichuraiana	Rw6G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	322
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	724, 731
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	2 cut(s)	212, 543
AfiI	CCNNNNNNNGG	3 cut(s)	322, 358, 647
AgsI	TTSAA	6 cut(s)	242, 282, 296, 603, 655, 724
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	4 cut(s)	402, 407, 469, 567
AluI	AGCT	4 cut(s)	402, 407, 469, 567
Alw21I	GWGCWC	4 cut(s)	390, 404, 444, 563
Alw26I	GTCTC	3 cut(s)	79, 254, 280
Alw44I	GTGCAC	2 cut(s)	386, 440
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	3 cut(s)	313, 518, 638
ApaLI	GTGCAC	2 cut(s)	386, 440
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	724, 731
AspS9I	GGNCC	2 cut(s)	193, 518
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	2 cut(s)	390, 444
BaeI	ACNNNNGTAYC	2 cut(s)	525, 558
BalI	TGGCCA	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	297, 497
Bbv12I	GWGCWC	4 cut(s)	390, 404, 444, 563
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	3 cut(s)	70, 124, 636
BciT130I	CCWGG	1 cut(s)	642
BcoDI	GTCTC	3 cut(s)	79, 254, 280
BfaI	CTAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	455
BisI	GCNGC	1 cut(s)	55
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	193, 518
BmrFI	CCNGG	1 cut(s)	642
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	694
BpiI	GAAGAC	2 cut(s)	297, 497
BpmI	CTGGAG	2 cut(s)	210, 653
Bpu10I	CCTNAGC	1 cut(s)	646
Bpu1102I	GCTNAGC	1 cut(s)	403
BsaI	GGTCTC	3 cut(s)	79, 254, 280
BsaJI	CCNNGG	2 cut(s)	233, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 358, 647
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	233, 342
BseGI	GGATG	2 cut(s)	62, 463
BseLI	CCNNNNNNNGG	3 cut(s)	322, 358, 647
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	3 cut(s)	5, 90, 417
BseNI	ACTGG	1 cut(s)	689
BseSI	GKGCMC	2 cut(s)	390, 444
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	3 cut(s)	315, 520, 640
BsiHKAI	GWGCWC	4 cut(s)	390, 404, 444, 563
BsiHKCI	CYCGRG	1 cut(s)	202
BsiWI	CGTACG	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	322, 358, 647
BsmAI	GTCTC	3 cut(s)	79, 254, 280
BsnI	GGCC	3 cut(s)	315, 520, 640
Bso31I	GGTCTC	3 cut(s)	79, 254, 280
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	4 cut(s)	390, 404, 444, 563
Bsp143I	GATC	1 cut(s)	229
Bsp1720I	GCTNAGC	1 cut(s)	403
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	3 cut(s)	315, 520, 640
BspCNI	CTCAG	3 cut(s)	6, 89, 416
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	3 cut(s)	79, 254, 280
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	233, 342
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	283, 585
BstDEI	CTNAG	4 cut(s)	14, 76, 403, 646
BstF5I	GGATG	2 cut(s)	62, 463
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	3 cut(s)	79, 254, 280
BstMBI	GATC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	640
BstSLI	GKGCMC	2 cut(s)	390, 444
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	297, 497
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	315, 520, 640
BtsCI	GGATG	2 cut(s)	62, 463
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 699
BveI	ACCTGC	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	193, 518
Csp6I	GTAC	2 cut(s)	211, 542
CviAII	CATG	2 cut(s)	424, 539
CviQI	GTAC	2 cut(s)	211, 542
DdeI	CTNAG	4 cut(s)	14, 76, 403, 646
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	283, 585
EarI	CTCTTC	2 cut(s)	283, 585
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	404
Eco31I	GGTCTC	3 cut(s)	79, 254, 280
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	640
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	427, 542
FalI	AAGNNNNNCTT	4 cut(s)	88, 120, 322, 354
FatI	CATG	2 cut(s)	423, 538
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	2 cut(s)	49, 470
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	1 cut(s)	55
GsuI	CTGGAG	2 cut(s)	210, 653
HaeIII	GGCC	3 cut(s)	315, 520, 640
Hin1II	CATG	2 cut(s)	427, 542
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	3 cut(s)	205, 494, 689
Hpy166II	GTNNAC	4 cut(s)	193, 388, 442, 530
Hpy188I	TCNGA	4 cut(s)	138, 221, 234, 681
Hpy188III	TCNNGA	5 cut(s)	85, 227, 455, 509, 632
Hpy8I	GTNNAC	4 cut(s)	193, 388, 442, 530
HpyAV	CCTTC	2 cut(s)	68, 649
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	335, 388, 442, 665
HpyF3I	CTNAG	4 cut(s)	14, 76, 403, 646
Hsp92II	CATG	2 cut(s)	427, 542
Kzo9I	GATC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	7 cut(s)	270, 297, 330, 497, 602, 684, 727
MfeI	CAATTG	1 cut(s)	475
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	4 cut(s)	390, 404, 444, 563
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	6 cut(s)	181, 435, 475, 660, 724, 731
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	214, 503
MmeI	TCCRAC	1 cut(s)	151
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	642
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	427, 542
NmuCI	GTSAC	1 cut(s)	581
PaqCI	CACCTGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	689
Pfl23II	CGTACG	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	213, 502
PpsI	GAGTC	2 cut(s)	213, 502
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspLI	CGTACG	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	193, 518
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	2 cut(s)	212, 543
RsaNI	GTAC	2 cut(s)	211, 542
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	404
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	193, 518
SchI	GAGTC	2 cut(s)	214, 503
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	4 cut(s)	390, 404, 444, 563
SfaNI	GCATC	1 cut(s)	344
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	6 cut(s)	181, 435, 475, 660, 724, 731
SsiI	CCGC	1 cut(s)	352
SspI	AATATT	1 cut(s)	599
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	266
TasI	AATT	6 cut(s)	181, 435, 475, 660, 724, 731
TfiI	GAWTC	1 cut(s)	689
TscAI	CASTG	2 cut(s)	390, 706
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	3 cut(s)	412, 447, 474
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	390, 706
Van91I	CCANNNNNTGG	1 cut(s)	322
VneI	GTGCAC	2 cut(s)	386, 440
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	724, 731
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.