MD11G1234600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
34127727 .. 34129445
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1234600.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGCGACACCAATGCTGCTCATGGCCTCAGAGCGGAGCACAACAAAACAACCCGCCAAAACCCTTTTCGGGTCCTACGAAGAATCCAAACCCGAGCCCGCCAAACACACCAAACCCACAAAGAAATCCGCCGCCAAACCCTCCTCAAACACTAAAAAGCAACCGCAAAGAGGCCTTGGAGTGGCTCAGCTGGAGCGACTGAGGCTTCAAGACTGGAAGAAAATGACTGAAATACCCCAGCTTCAGCCCCGACCACAATTCCTCGATCTTCCTCCTCTTCCTCATCATCATCATCATCATCATCAGTACCAAAACCCCATAACCCTACCCGACCCACTTAACAGCATTCCAGTGCAATACGGTGCATCCGGGCTCAATGGACCCGCGGTGATTAACGGCTGTGGTGGTTCTGCTGCTACTACAGCTGATTTTTATGGTTTGGTGGGTCAGAGGGTTGGGAATGGTTCTGGGTTTGGTTATGTTGGGGGGAATAATCTTGTGGCGAACCTGGATCCAGGTCCCTTTGGCTTTGGCGCTCCGGATCCGAGGGTTCAAAGTGGGGCTGTGTACGAGACCTCGAGAGAGCTCTCTTCAATGCCAAAGATACAATCTGTGCCTTCTGATTGCTGTGATCTCTGCCTCAAGAAGAAGAAGTTCCATAGTGGGAGTTATATGGGTTTCAACGACAGGAGTGACAACTCTGCGGCTGTTTCACCAATCAAGAGTTCTGATTTCCTCGGATTGGACGCTGAAGCTGGTGGTTTCGGTGCCGGAGTGGTGAATAGATCCGCCCGGTACCTGTGCCCCAGCAATCTTCTCGATGATCAGGGTGTAGAGGTTAGGGCAGTGCACAGAAGGGGAGGGTCAACTTGTGGTGGGATTTTTATGGAATACGAGTTTTTTCCAGCTGCTGATCATCAGAAAAGGGATGAGACCATGAAAAGAGGAGGAGGCACATATCCCAAGGAACTAGGGATGTTGCAGCTGCAAACAGTAGAAGAAGAAGAAGAAGAAGCTTCTGATATTACTGCTGCAACTAAAAATGGCTATGGGATTGGGGCAGCTGACAGTTACCATGATCATGGTGATGATGATGATCATCATAACCATCATACTTCTGTTGATTTGTCGCTCAAGCTTTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

383

Amino Acids

41.3

Weight (kDa)

6.38

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 795
AccB1I GGYRCC 2 cut(s) 767, 795
AccBSI CCGCTC 1 cut(s) 34
AccII CGCG 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 538
AclWI GGATC 5 cut(s) 506, 519, 536, 549, 780
AcuI CTGAAG 2 cut(s) 227, 771
AfaI GTAC 3 cut(s) 308, 569, 797
AfiI CCNNNNNNNGG 5 cut(s) 33, 69, 170, 181, 742
AgsI TTSAA 4 cut(s) 209, 554, 594, 682
AjnI CCWGG 2 cut(s) 507, 514
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 709, 741
Alw21I GWGCWC 3 cut(s) 41, 588, 852
Alw26I GTCTC 2 cut(s) 566, 926
Alw44I GTGCAC 1 cut(s) 848
AlwI GGATC 5 cut(s) 506, 519, 536, 549, 780
AlwNI CAGNNNCTG 1 cut(s) 911
Ama87I CYCGRG 2 cut(s) 92, 577
Aor13HI TCCGGA 1 cut(s) 538
AoxI GGCC 2 cut(s) 24, 172
ApaLI GTGCAC 1 cut(s) 848
ApeKI GCWGC 7 cut(s) 16, 413, 908, 982, 985, 1031, 1061
Asp700I GAANNNNTTC 1 cut(s) 653
Asp718I GGTACC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 3 cut(s) 72, 380, 518
AsuC2I CCSGG 2 cut(s) 370, 793
AsuHPI GGTGA 4 cut(s) 400, 705, 790, 1097
AvaI CYCGRG 2 cut(s) 92, 577
AvaII GGWCC 3 cut(s) 72, 380, 518
BaeGI GKGCMC 2 cut(s) 806, 852
BamHI GGATCC 2 cut(s) 511, 541
BanI GGYRCC 2 cut(s) 767, 795
BanII GRGCYC 3 cut(s) 99, 375, 588
Bbv12I GWGCWC 3 cut(s) 41, 588, 852
BbvI GCAGC 7 cut(s) 3, 400, 895, 972, 994, 1018, 1073
BccI CCATC 1 cut(s) 1116
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 3 cut(s) 29, 799, 833
BciT130I CCWGG 2 cut(s) 509, 516
BclI TGATCA 4 cut(s) 823, 913, 1078, 1096
BcnI CCSGG 2 cut(s) 370, 793
BcoDI GTCTC 2 cut(s) 566, 926
BfaI CTAG 1 cut(s) 971
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 537
BisI GCNGC 9 cut(s) 17, 132, 414, 705, 909, 983, 986, 1032, 1062
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 9 cut(s) 18, 133, 415, 706, 910, 984, 987, 1033, 1063
Bme1390I CCNGG 4 cut(s) 370, 509, 516, 793
Bme18I GGWCC 3 cut(s) 72, 380, 518
BmeT110I CYCGRG 2 cut(s) 92, 577
BmgT120I GGNCC 3 cut(s) 72, 380, 518
BmiI GGNNCC 7 cut(s) 73, 382, 513, 520, 543, 769, 797
BmrFI CCNGG 4 cut(s) 370, 509, 516, 793
BmsI GCATC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 212
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 626, 1118
BpuMI CCSGG 2 cut(s) 370, 793
BsaBI GATNNNNATC 2 cut(s) 1095, 1098
BsaI GGTCTC 2 cut(s) 566, 926
BsaJI CCNNGG 5 cut(s) 175, 384, 545, 736, 963
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 69, 170, 181, 742
Bse1I ACTGG 2 cut(s) 218, 350
Bse8I GATNNNNATC 2 cut(s) 1095, 1098
BseAI TCCGGA 1 cut(s) 538
BseBI CCWGG 2 cut(s) 509, 516
BseDI CCNNGG 5 cut(s) 175, 384, 545, 736, 963
BseGI GGATG 3 cut(s) 365, 934, 981
BseJI GATNNNNATC 2 cut(s) 1095, 1098
BseLI CCNNNNNNNGG 5 cut(s) 33, 69, 170, 181, 742
BseMII CTCAG 3 cut(s) 42, 191, 200
BseNI ACTGG 2 cut(s) 218, 350
BseRI GAGGAG 4 cut(s) 133, 264, 960, 963
BseSI GKGCMC 2 cut(s) 806, 852
BseXI GCAGC 7 cut(s) 3, 400, 895, 972, 994, 1018, 1073
BseYI CCCAGC 2 cut(s) 237, 806
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 26, 174
BshNI GGYRCC 2 cut(s) 767, 795
BsiHKAI GWGCWC 3 cut(s) 41, 588, 852
BsiHKCI CYCGRG 2 cut(s) 92, 577
BsiSI CCGG 4 cut(s) 369, 539, 771, 793
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 5 cut(s) 33, 69, 170, 181, 742
BsmAI GTCTC 2 cut(s) 566, 926
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 2 cut(s) 26, 174
Bso31I GGTCTC 2 cut(s) 566, 926
BsoBI CYCGRG 2 cut(s) 92, 577
Bsp1286I GDGCHC 6 cut(s) 41, 99, 375, 588, 806, 852
Bsp13I TCCGGA 1 cut(s) 538
Bsp143I GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
Bsp1720I GCTNAGC 1 cut(s) 186
BspANI GGCC 2 cut(s) 26, 174
BspCNI CTCAG 3 cut(s) 41, 192, 199
BspEI TCCGGA 1 cut(s) 538
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 7 cut(s) 73, 382, 513, 520, 543, 769, 797
BspPI GGATC 5 cut(s) 506, 519, 536, 549, 780
BspT107I GGYRCC 2 cut(s) 767, 795
BspTNI GGTCTC 2 cut(s) 566, 926
BsrBI CCGCTC 1 cut(s) 34
BsrI ACTGG 2 cut(s) 218, 350
BssECI CCNNGG 5 cut(s) 175, 384, 545, 736, 963
BssMI GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
BssT1I CCWWGG 2 cut(s) 175, 963
Bst2UI CCWGG 2 cut(s) 509, 516
Bst4CI ACNGT 3 cut(s) 362, 994, 1070
Bst6I CTCTTC 2 cut(s) 282, 595
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 28, 186, 200
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 365, 934, 981
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 9 cut(s) 268, 514, 544, 634, 788, 826, 916, 1081, 1099
BstMAI GTCTC 2 cut(s) 566, 926
BstMBI GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
BstMWI GCNNNNNNNGC 2 cut(s) 202, 422
BstNI CCWGG 2 cut(s) 509, 516
BstSCI CCNGG 4 cut(s) 368, 507, 514, 791
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 2 cut(s) 806, 852
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 7 cut(s) 3, 400, 895, 972, 994, 1018, 1073
BstX2I RGATCY 3 cut(s) 511, 541, 785
BstXI CCANNNNNNTGG 1 cut(s) 1082
BstYI RGATCY 3 cut(s) 511, 541, 785
BsuRI GGCC 2 cut(s) 26, 174
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 3 cut(s) 365, 934, 981
BtsI GCAGTG 1 cut(s) 852
BtsIMutI CAGTG 2 cut(s) 357, 852
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 3 cut(s) 72, 380, 518
Cfr42I CCGCGG 1 cut(s) 387
CseI GACGC 1 cut(s) 755
Csp6I GTAC 3 cut(s) 307, 568, 796
CviAII CATG 4 cut(s) 22, 937, 1076, 1082
CviQI GTAC 3 cut(s) 307, 568, 796
DdeI CTNAG 3 cut(s) 28, 186, 200
DpnI GATC 9 cut(s) 267, 513, 543, 633, 787, 825, 915, 1080, 1098
DpnII GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
Eam1104I CTCTTC 2 cut(s) 282, 595
EarI CTCTTC 2 cut(s) 282, 595
EciI GGCGGA 2 cut(s) 118, 778
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 2 cut(s) 175, 963
Eco147I AGGCCT 1 cut(s) 174
Eco24I GRGCYC 3 cut(s) 99, 375, 588
Eco31I GGTCTC 2 cut(s) 566, 926
Eco47I GGWCC 3 cut(s) 72, 380, 518
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 227, 771
Eco88I CYCGRG 2 cut(s) 92, 577
EcoICRI GAGCTC 1 cut(s) 586
EcoO109I RGGNCCY 2 cut(s) 72, 518
EcoRII CCWGG 2 cut(s) 507, 514
EcoT14I CCWWGG 2 cut(s) 175, 963
EcoT38I GRGCYC 3 cut(s) 99, 375, 588
ErhI CCWWGG 2 cut(s) 175, 963
FaeI CATG 4 cut(s) 25, 940, 1079, 1085
FaqI GGGAC 1 cut(s) 504
FatI CATG 4 cut(s) 21, 936, 1075, 1081
FauI CCCGC 3 cut(s) 61, 106, 391
FbaI TGATCA 4 cut(s) 823, 913, 1078, 1096
Fnu4HI GCNGC 9 cut(s) 17, 132, 414, 705, 909, 983, 986, 1032, 1062
FokI GGATG 3 cut(s) 352, 941, 988
FriOI GRGCYC 3 cut(s) 99, 375, 588
Fsp4HI GCNGC 9 cut(s) 17, 132, 414, 705, 909, 983, 986, 1032, 1062
FspBI CTAG 1 cut(s) 971
GlaI GCGC 1 cut(s) 535
GluI GCNGC 9 cut(s) 17, 132, 414, 705, 909, 983, 986, 1032, 1062
GsaI CCCAGC 2 cut(s) 241, 810
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 2 cut(s) 26, 174
HapII CCGG 4 cut(s) 369, 539, 771, 793
HgaI GACGC 1 cut(s) 755
HhaI GCGC 1 cut(s) 536
Hin1II CATG 4 cut(s) 25, 940, 1079, 1085
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HindIII AAGCTT 2 cut(s) 1014, 1136
HinfI GANTC 1 cut(s) 83
HpaII CCGG 4 cut(s) 369, 539, 771, 793
HphI GGTGA 4 cut(s) 400, 705, 790, 1097
Hpy166II GTNNAC 3 cut(s) 568, 850, 867
Hpy188I TCNGA 8 cut(s) 31, 450, 546, 622, 730, 740, 921, 1021
Hpy188III TCNNGA 6 cut(s) 209, 539, 579, 643, 721, 818
Hpy8I GTNNAC 3 cut(s) 568, 850, 867
HpyAV CCTTC 2 cut(s) 627, 849
HpyCH4III ACNGT 3 cut(s) 362, 994, 1070
HpyCH4V TGCA 6 cut(s) 355, 365, 850, 982, 988, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 422
HpyF3I CTNAG 3 cut(s) 28, 186, 200
Hsp92II CATG 4 cut(s) 25, 940, 1079, 1085
HspAI GCGC 1 cut(s) 534
Kpn2I TCCGGA 1 cut(s) 538
KpnI GGTACC 1 cut(s) 799
Ksp22I TGATCA 4 cut(s) 823, 913, 1078, 1096
KspI CCGCGG 1 cut(s) 387
Kzo9I GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
LmnI GCTCC 3 cut(s) 36, 193, 541
Lsp1109I GCAGC 7 cut(s) 3, 400, 895, 972, 994, 1018, 1073
LweI GCATC 1 cut(s) 374
MaeI CTAG 1 cut(s) 971
MaeIII GTNAC 2 cut(s) 692, 1070
MalI GATC 9 cut(s) 267, 513, 543, 633, 787, 825, 915, 1080, 1098
MbiI CCGCTC 1 cut(s) 34
MboI GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
MflI RGATCY 3 cut(s) 511, 541, 785
MhlI GDGCHC 6 cut(s) 41, 99, 375, 588, 806, 852
MluCI AATT 1 cut(s) 257
MroI TCCGGA 1 cut(s) 538
MroXI GAANNNNTTC 1 cut(s) 653
MseI TTAA 2 cut(s) 339, 393
MslI CAYNNNNRTG 3 cut(s) 350, 1080, 1086
MspA1I CMGCKG 6 cut(s) 190, 386, 425, 908, 985, 1064
MspI CCGG 4 cut(s) 369, 539, 771, 793
MspR9I CCNGG 4 cut(s) 370, 509, 516, 793
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 2 cut(s) 509, 516
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 202, 422
NciI CCSGG 2 cut(s) 370, 793
NdeII GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
NlaIII CATG 4 cut(s) 25, 940, 1079, 1085
NlaIV GGNNCC 7 cut(s) 73, 382, 513, 520, 543, 769, 797
NmuCI GTSAC 1 cut(s) 692
PaeR7I CTCGAG 1 cut(s) 577
PceI AGGCCT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 9 cut(s) 18, 133, 415, 706, 910, 984, 987, 1033, 1063
PpuMI RGGWCCY 2 cut(s) 72, 518
Psp124BI GAGCTC 1 cut(s) 588
Psp5II RGGWCCY 2 cut(s) 72, 518
Psp6I CCWGG 2 cut(s) 507, 514
PspFI CCCAGC 2 cut(s) 237, 806
PspGI CCWGG 2 cut(s) 507, 514
PspN4I GGNNCC 7 cut(s) 73, 382, 513, 520, 543, 769, 797
PspPI GGNCC 3 cut(s) 72, 380, 518
PspPPI RGGWCCY 2 cut(s) 72, 518
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 3 cut(s) 511, 541, 785
PvuII CAGCTG 5 cut(s) 190, 425, 908, 985, 1064
RsaI GTAC 3 cut(s) 308, 569, 797
RsaNI GTAC 3 cut(s) 307, 568, 796
RseI CAYNNNNRTG 3 cut(s) 350, 1080, 1086
SacI GAGCTC 1 cut(s) 588
SacII CCGCGG 1 cut(s) 387
SaqAI TTAA 2 cut(s) 339, 393
SatI GCNGC 9 cut(s) 17, 132, 414, 705, 909, 983, 986, 1032, 1062
Sau3AI GATC 9 cut(s) 265, 511, 541, 631, 785, 823, 913, 1078, 1096
Sau96I GGNCC 3 cut(s) 72, 380, 518
ScrFI CCNGG 4 cut(s) 370, 509, 516, 793
SduI GDGCHC 6 cut(s) 41, 99, 375, 588, 806, 852
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 1 cut(s) 420
Sfr274I CTCGAG 1 cut(s) 577
Sfr303I CCGCGG 1 cut(s) 387
SgrBI CCGCGG 1 cut(s) 387
SinI GGWCC 3 cut(s) 72, 380, 518
SlaI CTCGAG 1 cut(s) 577
SmiMI CAYNNNNRTG 3 cut(s) 350, 1080, 1086
SmlI CTYRAG 3 cut(s) 577, 641, 1133
SmoI CTYRAG 3 cut(s) 577, 641, 1133
Sse9I AATT 1 cut(s) 257
SseBI AGGCCT 1 cut(s) 174
SspMI CTAG 1 cut(s) 971
SstI GAGCTC 1 cut(s) 588
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 4 cut(s) 368, 507, 514, 791
StyI CCWWGG 2 cut(s) 175, 963
TaaI ACNGT 3 cut(s) 362, 994, 1070
TaqI TCGA 3 cut(s) 264, 578, 819
TasI AATT 1 cut(s) 257
TauI GCSGC 2 cut(s) 134, 707
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 339, 393
Tru9I TTAA 2 cut(s) 339, 393
TscAI CASTG 2 cut(s) 357, 852
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 7 cut(s) 16, 413, 908, 982, 985, 1031, 1061
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 2 cut(s) 953, 1131
TspRI CASTG 2 cut(s) 357, 852
VneI GTGCAC 1 cut(s) 848
VpaK11BI GGWCC 3 cut(s) 72, 380, 518
XhoI CTCGAG 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.