Prupe.6G133900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013605
Physical Location & Seq
Reverse (-)
10500492 .. 10502412
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G133900.1

Sequence Viewer

Length: 696 bp
ATGCATGACAAAATAGAACCTCCTAAAGGACCTGGGCAATGCTCCACCGACAAAAGGGACACTTGGGTTAACAGTAGACACCAACGTACCATCAGAGACAACCTCGATCGCATGTTGTCTCACAGGGTTGGGAATGGTTCTGGGTTTGGTTATGTTGGAGGTAATAATTTGGTGGTGGACCTAAACCCGAGTCCGTACGCAATCAGACCTCCAGATCCGAGGTTTGAAGTTGGGGCTATGTATGAGACCATGAGACCTCGAAAGAGGTCTCTTCAATGCCAAAGGTTCAACCTTTGTCTTCTGGTGGCCAAGTGGTGGGGAGAAGTGCAGCTTCCTTGGGCTATCGCAATGAGGATAAGTCTTGAGTTCATGTTCTTTTATTGTAAAGAAATTGTGCACACCTGCTCTTTGGATGAAACAGAGCTTCACAATTGCTTACAAGAACGGGAGTCTGTTGGTCTTCTTGACAGAGGGCCTATCTGTCAACATACTCATGTATCCCTTTTTATTTCGTGCTCTAGCTACTTGTATAAATGTCACAAAGAAGAGAAATATTCAATACTAAATAGGTTGAGAGTGTTCCATCTGGAGAGGCCAGGCTTAGGATTGAAGGAAATTGCACAAGAATACAATCTGAACTGGGATTCTTCTAACACTGAAGCTGGCAGTAGCATATTGAATTTGGAATTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NOZZLE

Protein Analysis

232

Amino Acids

26.78

Weight (kDa)

7.61

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 315
AccI GTMKAC 1 cut(s) 76
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 679, 686
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 2 cut(s) 88, 197
AfiI CCNNNNNNNGG 4 cut(s) 26, 54, 315, 602
AgsI TTSAA 6 cut(s) 227, 275, 289, 558, 610, 679
AjnI CCWGG 2 cut(s) 31, 595
AluBI AGCT 4 cut(s) 331, 424, 522, 662
AluI AGCT 4 cut(s) 331, 424, 522, 662
Alw21I GWGCWC 2 cut(s) 399, 518
Alw26I GTCTC 5 cut(s) 90, 123, 239, 247, 273
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 3 cut(s) 306, 473, 593
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 2 cut(s) 679, 686
AspS9I GGNCC 3 cut(s) 29, 178, 473
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 2 cut(s) 29, 178
BaeGI GKGCMC 1 cut(s) 399
BaeI ACNNNNGTAYC 4 cut(s) 70, 103, 480, 513
BalI TGGCCA 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 290, 452
Bbv12I GWGCWC 2 cut(s) 399, 518
BbvI GCAGC 1 cut(s) 340
BccI CCATC 2 cut(s) 98, 591
BciT130I CCWGG 2 cut(s) 33, 597
BciVI GTATCC 1 cut(s) 508
BcoDI GTCTC 5 cut(s) 90, 123, 239, 247, 273
BfaI CTAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 410
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
Bme1390I CCNGG 2 cut(s) 33, 597
Bme18I GGWCC 2 cut(s) 29, 178
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 29, 178, 473
BmrFI CCNGG 2 cut(s) 33, 597
BmrI ACTGGG 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 649
BpiI GAAGAC 2 cut(s) 290, 452
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 2 cut(s) 195, 608
Bpu10I CCTNAGC 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 383
BsaI GGTCTC 3 cut(s) 239, 247, 273
BsaJI CCNNGG 3 cut(s) 32, 218, 335
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 54, 315, 602
Bse1I ACTGG 1 cut(s) 644
Bse3DI GCAATG 2 cut(s) 44, 354
BseBI CCWGG 2 cut(s) 33, 597
BseDI CCNNGG 3 cut(s) 32, 218, 335
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 4 cut(s) 26, 54, 315, 602
BseMI GCAATG 2 cut(s) 44, 354
BseNI ACTGG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 308, 475, 595
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 399, 518
BsiHKCI CYCGRG 1 cut(s) 187
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 4 cut(s) 26, 54, 315, 602
BsmAI GTCTC 5 cut(s) 90, 123, 239, 247, 273
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 3 cut(s) 308, 475, 595
Bso31I GGTCTC 3 cut(s) 239, 247, 273
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 399, 518
Bsp143I GATC 2 cut(s) 106, 214
BspANI GGCC 3 cut(s) 308, 475, 595
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 1 cut(s) 209
BspTNI GGTCTC 3 cut(s) 239, 247, 273
BsrDI GCAATG 2 cut(s) 44, 354
BsrI ACTGG 1 cut(s) 644
BssECI CCNNGG 3 cut(s) 32, 218, 335
BssMI GATC 2 cut(s) 106, 214
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 33, 597
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 276, 540
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 1 cut(s) 601
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 2 cut(s) 109, 217
BstMAI GTCTC 5 cut(s) 90, 123, 239, 247, 273
BstMBI GATC 2 cut(s) 106, 214
BstMCI CGRYCG 1 cut(s) 109
BstNI CCWGG 2 cut(s) 33, 597
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 31, 595
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 2 cut(s) 290, 452
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 3 cut(s) 308, 475, 595
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 654
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 664
Cfr13I GGNCC 3 cut(s) 29, 178, 473
Csp6I GTAC 2 cut(s) 87, 196
CviAII CATG 5 cut(s) 5, 112, 250, 370, 494
CviQI GTAC 2 cut(s) 87, 196
DdeI CTNAG 1 cut(s) 601
DpnI GATC 2 cut(s) 108, 216
DpnII GATC 2 cut(s) 106, 214
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 276, 540
EarI CTCTTC 2 cut(s) 276, 540
Eco130I CCWWGG 1 cut(s) 335
Eco31I GGTCTC 3 cut(s) 239, 247, 273
Eco47I GGWCC 2 cut(s) 29, 178
Eco57I CTGAAG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoO109I RGGNCCY 2 cut(s) 29, 473
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 31, 595
EcoT14I CCWWGG 1 cut(s) 335
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 5 cut(s) 8, 115, 253, 373, 497
FalI AAGNNNNNCTT 4 cut(s) 46, 78, 315, 347
FaqI GGGAC 1 cut(s) 71
FatI CATG 5 cut(s) 4, 111, 249, 369, 493
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 1 cut(s) 519
GluI GCNGC 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 195, 608
HaeIII GGCC 3 cut(s) 308, 475, 595
Hin1II CATG 5 cut(s) 8, 115, 253, 373, 497
HincII GTYRAC 2 cut(s) 70, 485
HindII GTYRAC 2 cut(s) 70, 485
HinfI GANTC 3 cut(s) 190, 449, 644
HpaI GTTAAC 1 cut(s) 70
Hpy166II GTNNAC 5 cut(s) 70, 77, 178, 397, 485
Hpy188I TCNGA 4 cut(s) 95, 206, 219, 636
Hpy188III TCNNGA 4 cut(s) 212, 362, 464, 587
Hpy8I GTNNAC 5 cut(s) 70, 77, 178, 397, 485
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 4, 328, 397, 620
HpyF3I CTNAG 1 cut(s) 601
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 5 cut(s) 8, 115, 253, 373, 497
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 106, 214
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 1 cut(s) 519
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 536
MalI GATC 2 cut(s) 108, 216
MboI GATC 2 cut(s) 106, 214
MboII GAAGA 6 cut(s) 263, 290, 452, 557, 639, 682
MfeI CAATTG 1 cut(s) 430
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 399, 518
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 6 cut(s) 166, 390, 430, 615, 679, 686
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 2 cut(s) 199, 458
MmeI TCCRAC 1 cut(s) 136
Mox20I TGGCCA 1 cut(s) 308
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 308
MspR9I CCNGG 2 cut(s) 33, 597
MunI CAATTG 1 cut(s) 430
MvaI CCWGG 2 cut(s) 33, 597
NdeII GATC 2 cut(s) 106, 214
NlaIII CATG 5 cut(s) 8, 115, 253, 373, 497
NmuCI GTSAC 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 644
Pfl23II CGTACG 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 1 cut(s) 330
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 2 cut(s) 198, 457
PpsI GAGTC 2 cut(s) 198, 457
PpuMI RGGWCCY 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 31, 595
PspGI CCWGG 2 cut(s) 31, 595
PspLI CGTACG 1 cut(s) 195
PspPI GGNCC 3 cut(s) 29, 178, 473
PspPPI RGGWCCY 1 cut(s) 29
PsuI RGATCY 1 cut(s) 214
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 2 cut(s) 88, 197
RsaNI GTAC 2 cut(s) 87, 196
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 2 cut(s) 106, 214
Sau96I GGNCC 3 cut(s) 29, 178, 473
SchI GAGTC 2 cut(s) 199, 458
ScrFI CCNGG 2 cut(s) 33, 597
SduI GDGCHC 2 cut(s) 399, 518
SinI GGWCC 2 cut(s) 29, 178
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 6 cut(s) 166, 390, 430, 615, 679, 686
SspI AATATT 1 cut(s) 554
SspMI CTAG 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 31, 595
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 105, 259
TasI AATT 6 cut(s) 166, 390, 430, 615, 679, 686
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 2 cut(s) 358, 429
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 661
Van91I CCANNNNNTGG 1 cut(s) 315
VneI GTGCAC 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 29, 178
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 2 cut(s) 679, 686
XceI RCATGY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.