Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004935.1

Orthogroup ID

OG0013605

Physical Location & Seq

Genomic Coordinates Forward (+)

184676 .. 186362

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004935.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgtacagaccggtgatgctcatggcctcagattaccagagcacaacccaagattcttcccgttttgggtgcgaagaatccaaaaaacccgaaaccaccaccaaaaccagtactagcaccaaagaaaaatcaaggaagtcagctaaacctaaaaggccaaagccccagagaggtgttggtgtggctcagctggagcgcctccgtctccaacagagaggtgtgggtgtgaccaaattaacccaaatgcccctcccccatatcctaccgcaacctcaacctcaacctcaacctcagacccaagttgtccaaaatgttggttttccagatcaccagcagcgccagtttcaatactacccaaacccagaaacccgcgccgacccgcttctcagcattccggtactctacggtgcgtccaactacgatggagccatgagtactggctctggtttggtgggcttggaccggaccggtttgttagttcagacagttaatgggaatggtggttcagctgggtttggttatgggtacaatgttcgtcttcataatgatgttggtgggttggttatggatccgaaccagtacggtgtcgttggggctggggctccgaatcgtggggctgtgtatgagatctcgaacgagctctcttcaataccaaagatgaagcagcaaccctcctcttcttcttcatctgaatattgctgctgttgcaagcagaaaagattcaattgtggaaacaacatgggttttggggaatctccggctgtctttccgatggtcaacagttctgatcttcccggattcgaccaacaaaacatcccaaatgtccgggtagctggggaaatcggcgtcggtttcaatgctggtacttacttggaccgccgctccagtcttgttgatgagagtgtggaggttagggcagttcacaggaaggggagacaagcaggtggtgatatcatgaaggagtatgaattctttcctgatcacaacaacaactcttcttcagtagtctcatcaggcacatatcccatggagcataaaatagttgcttcatcaactaattcttcttcagttggtagatcatcagaagcttctgatcaacatcttggtgctgcttgtattgagggggctgacatgatgatgatgatgatgagcagtggctatagtcctgttgatttgtcactcaaattgtctttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NOZZLE

Protein Analysis

398

Amino Acids

43.11

Weight (kDa)

8.56

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05340 FvH4_3g04110
malus_domestica	MD03G1216800.v1.1 MD11G1234600.v1.1
prunus_persica	Prupe.4G192500_v2.0.a1 Prupe.6G133800_v2.0.a1 Prupe.6G133900_v2.0.a1 Prupe.8G142800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0255571
rosa_laevigata	RLG00000014830
rosa_multiflora	Rmu_sc0004935.1_g000041
rosa_roxburghii	Rroxscaffold_7G00209880
rosa_rugosa	Rorug05G0559500
rosa_samantha	Rh6AG078000 Rh6BG070100 Rh6CG068900 Rh6DG065800
rosa_wichuraiana	Rw6G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	932
Acc36I	ACCTGC	1 cut(s)	932
AccBSI	CCGCTC	1 cut(s)	882
AccII	CGCG	1 cut(s)	372
AciI	CCGC	5 cut(s)	266, 370, 380, 877, 880
AclWI	GGATC	2 cut(s)	563, 576
AcsI	RAATTY	1 cut(s)	968
AcuI	CTGAAG	2 cut(s)	984, 1050
AcyI	GRCGYC	1 cut(s)	846
AfaI	GTAC	7 cut(s)	5, 112, 399, 436, 527, 581, 865
AfiI	CCNNNNNNNGG	3 cut(s)	66, 170, 611
AgeI	ACCGGT	2 cut(s)	10, 467
AgsI	TTSAA	4 cut(s)	347, 648, 724, 856
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	6 cut(s)	143, 190, 509, 640, 833, 1088
AluI	AGCT	6 cut(s)	143, 190, 509, 640, 833, 1088
Alw21I	GWGCWC	2 cut(s)	44, 642
Alw26I	GTCTC	3 cut(s)	209, 928, 1012
AlwI	GGATC	2 cut(s)	563, 576
AoxI	GGCC	2 cut(s)	24, 155
ApeKI	GCWGC	4 cut(s)	334, 664, 699, 1109
ApoI	RAATTY	1 cut(s)	968
AsiGI	ACCGGT	2 cut(s)	10, 467
Asp700I	GAANNNNTTC	2 cut(s)	719, 972
AspLEI	GCGC	3 cut(s)	198, 339, 374
AspS9I	GGNCC	3 cut(s)	460, 465, 874
AsuC2I	CCSGG	2 cut(s)	795, 827
AsuHPI	GGTGA	3 cut(s)	25, 320, 959
AvaII	GGWCC	3 cut(s)	460, 465, 874
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	604, 642
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	44, 642
BbvI	GCAGC	4 cut(s)	346, 676, 686, 1096
BccI	CCATC	2 cut(s)	416, 766
BclI	TGATCA	2 cut(s)	979, 1093
BcnI	CCSGG	2 cut(s)	795, 827
BcoDI	GTCTC	3 cut(s)	209, 928, 1012
BfaI	CTAG	2 cut(s)	114, 1195
BfmI	CTRYAG	1 cut(s)	1159
BfoI	RGCGCY	2 cut(s)	199, 340
BfuAI	ACCTGC	1 cut(s)	932
BglII	AGATCT	1 cut(s)	627
BisI	GCNGC	5 cut(s)	335, 665, 700, 880, 1110
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	5 cut(s)	336, 666, 701, 881, 1111
BmcAI	AGTACT	2 cut(s)	112, 436
Bme1390I	CCNGG	2 cut(s)	795, 827
Bme18I	GGWCC	3 cut(s)	460, 465, 874
BmgT120I	GGNCC	3 cut(s)	460, 465, 874
BmiI	GGNNCC	3 cut(s)	427, 570, 603
BmrFI	CCNGG	2 cut(s)	795, 827
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	212, 868
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	795, 827
BsaBI	GATNNNNATC	1 cut(s)	1098
BsaHI	GRCGYC	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	1026
BsaWI	WCCGGW	4 cut(s)	10, 394, 462, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	866, 896
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 170, 611
Bse118I	RCCGGY	2 cut(s)	10, 467
Bse1I	ACTGG	5 cut(s)	108, 340, 442, 577, 885
Bse8I	GATNNNNATC	1 cut(s)	1098
BseDI	CCNNGG	1 cut(s)	1026
BseGI	GGATG	1 cut(s)	813
BseJI	GATNNNNATC	1 cut(s)	1098
BseLI	CCNNNNNNNGG	3 cut(s)	66, 170, 611
BseMII	CTCAG	4 cut(s)	42, 200, 305, 400
BseNI	ACTGG	5 cut(s)	108, 340, 442, 577, 885
BseRI	GAGGAG	1 cut(s)	664
BseXI	GCAGC	4 cut(s)	346, 676, 686, 1096
BseYI	CCCAGC	3 cut(s)	509, 596, 833
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	26, 157
BshTI	ACCGGT	2 cut(s)	10, 467
BsiHKAI	GWGCWC	2 cut(s)	44, 642
BsiSI	CCGG	7 cut(s)	11, 395, 463, 468, 758, 795, 826
BslI	CCNNNNNNNGG	3 cut(s)	66, 170, 611
BsmAI	GTCTC	3 cut(s)	209, 928, 1012
BsmBI	CGTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	26, 157
Bsp1286I	GDGCHC	3 cut(s)	44, 604, 642
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	1026
BspACI	CCGC	5 cut(s)	266, 370, 380, 877, 880
BspANI	GGCC	2 cut(s)	26, 157
BspCNI	CTCAG	4 cut(s)	41, 199, 304, 399
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	3 cut(s)	427, 570, 603
BspMI	ACCTGC	1 cut(s)	932
BspPI	GGATC	2 cut(s)	563, 576
BsrBI	CCGCTC	1 cut(s)	882
BsrFI	RCCGGY	2 cut(s)	10, 467
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	108, 340, 442, 577, 885
BssAI	RCCGGY	2 cut(s)	10, 467
BssECI	CCNNGG	1 cut(s)	1026
BssMI	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
BssNI	GRCGYC	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	1026
Bst4CI	ACNGT	4 cut(s)	407, 487, 584, 782
Bst6I	CTCTTC	3 cut(s)	649, 682, 1000
BstACI	GRCGYC	1 cut(s)	846
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	710
BstDEI	CTNAG	4 cut(s)	28, 186, 291, 386
BstDSI	CCRYGG	1 cut(s)	1026
BstF5I	GGATG	1 cut(s)	813
BstFNI	CGCG	1 cut(s)	372
BstH2I	RGCGCY	2 cut(s)	199, 340
BstHHI	GCGC	3 cut(s)	198, 339, 374
BstKTI	GATC	7 cut(s)	328, 571, 630, 790, 982, 1079, 1096
BstMAI	GTCTC	3 cut(s)	209, 928, 1012
BstMBI	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
BstMWI	GCNNNNNNNGC	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	793, 825
BstSFI	CTRYAG	1 cut(s)	1159
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	4 cut(s)	346, 676, 686, 1096
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	568, 627
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	2 cut(s)	568, 627
BsuRI	GGCC	2 cut(s)	26, 157
BtgI	CCRYGG	1 cut(s)	1026
BtsCI	GGATG	1 cut(s)	813
BtsI	GCAGTG	1 cut(s)	1159
BtsIMutI	CAGTG	1 cut(s)	1159
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	1 cut(s)	710
CciI	TCATGA	1 cut(s)	954
CfoI	GCGC	3 cut(s)	198, 339, 374
Cfr10I	RCCGGY	2 cut(s)	10, 467
Cfr13I	GGNCC	3 cut(s)	460, 465, 874
CpoI	CGGWCCG	1 cut(s)	465
CseI	GACGC	2 cut(s)	399, 835
Csp6I	GTAC	7 cut(s)	4, 111, 398, 435, 526, 580, 864
CspAI	ACCGGT	2 cut(s)	10, 467
CspI	CGGWCCG	1 cut(s)	465
CviAII	CATG	6 cut(s)	22, 430, 739, 955, 1027, 1132
CviQI	GTAC	7 cut(s)	4, 111, 398, 435, 526, 580, 864
DdeI	CTNAG	4 cut(s)	28, 186, 291, 386
DpnI	GATC	7 cut(s)	327, 570, 629, 789, 981, 1078, 1095
DpnII	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
Eam1104I	CTCTTC	3 cut(s)	649, 682, 1000
EarI	CTCTTC	3 cut(s)	649, 682, 1000
Ecl136II	GAGCTC	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	1026
Eco24I	GRGCYC	2 cut(s)	604, 642
Eco32I	GATATC	1 cut(s)	952
Eco47I	GGWCC	3 cut(s)	460, 465, 874
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	984, 1050
EcoICRI	GAGCTC	1 cut(s)	640
EcoRI	GAATTC	1 cut(s)	968
EcoRV	GATATC	1 cut(s)	952
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT38I	GRGCYC	2 cut(s)	604, 642
ErhI	CCWWGG	1 cut(s)	1026
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	6 cut(s)	25, 433, 742, 958, 1030, 1135
FatI	CATG	6 cut(s)	21, 429, 738, 954, 1026, 1131
FauI	CCCGC	2 cut(s)	377, 387
FbaI	TGATCA	2 cut(s)	979, 1093
Fnu4HI	GCNGC	5 cut(s)	335, 665, 700, 880, 1110
FokI	GGATG	1 cut(s)	800
FriOI	GRGCYC	2 cut(s)	604, 642
Fsp4HI	GCNGC	5 cut(s)	335, 665, 700, 880, 1110
FspBI	CTAG	2 cut(s)	114, 1195
GlaI	GCGC	3 cut(s)	197, 338, 373
GluI	GCNGC	5 cut(s)	335, 665, 700, 880, 1110
GsaI	CCCAGC	3 cut(s)	513, 600, 837
GsuI	CTGGAG	2 cut(s)	212, 868
HaeII	RGCGCY	2 cut(s)	199, 340
HaeIII	GGCC	2 cut(s)	26, 157
HapII	CCGG	7 cut(s)	11, 395, 463, 468, 758, 795, 826
HgaI	GACGC	2 cut(s)	399, 835
HhaI	GCGC	3 cut(s)	198, 339, 374
Hin1I	GRCGYC	1 cut(s)	846
Hin1II	CATG	6 cut(s)	25, 433, 742, 958, 1030, 1135
Hin6I	GCGC	3 cut(s)	196, 337, 372
HinP1I	GCGC	3 cut(s)	196, 337, 372
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	1086
HinfI	GANTC	6 cut(s)	53, 77, 607, 720, 752, 798
HpaII	CCGG	7 cut(s)	11, 395, 463, 468, 758, 795, 826
HphI	GGTGA	3 cut(s)	25, 320, 959
Hpy166II	GTNNAC	2 cut(s)	778, 922
Hpy188III	TCNNGA	4 cut(s)	323, 631, 955, 977
Hpy8I	GTNNAC	2 cut(s)	778, 922
Hpy99I	CGWCG	1 cut(s)	851
HpyAV	CCTTC	2 cut(s)	922, 952
HpyCH4III	ACNGT	4 cut(s)	407, 487, 584, 782
HpyCH4V	TGCA	1 cut(s)	708
HpyF10VI	GCNNNNNNNGC	1 cut(s)	705
HpyF3I	CTNAG	4 cut(s)	28, 186, 291, 386
Hsp92I	GRCGYC	1 cut(s)	846
Hsp92II	CATG	6 cut(s)	25, 433, 742, 958, 1030, 1135
HspAI	GCGC	3 cut(s)	196, 337, 372
Ksp22I	TGATCA	2 cut(s)	979, 1093
Kzo9I	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
LmnI	GCTCC	5 cut(s)	193, 425, 607, 887, 1030
Lsp1109I	GCAGC	4 cut(s)	346, 676, 686, 1096
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	2 cut(s)	114, 1195
MaeIII	GTNAC	2 cut(s)	226, 1176
MalI	GATC	7 cut(s)	327, 570, 629, 789, 981, 1078, 1095
MbiI	CCGCTC	1 cut(s)	882
MboI	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
MfeI	CAATTG	1 cut(s)	724
MflI	RGATCY	2 cut(s)	568, 627
MhlI	GDGCHC	3 cut(s)	44, 604, 642
MluCI	AATT	5 cut(s)	233, 724, 968, 1057, 1184
MmeI	TCCRAC	2 cut(s)	232, 438
MroXI	GAANNNNTTC	2 cut(s)	719, 972
MseI	TTAA	2 cut(s)	236, 489
MslI	CAYNNNNRTG	3 cut(s)	546, 1104, 1136
MspA1I	CMGCKG	2 cut(s)	190, 509
MspI	CCGG	7 cut(s)	11, 395, 463, 468, 758, 795, 826
MspR9I	CCNGG	2 cut(s)	795, 827
MunI	CAATTG	1 cut(s)	724
Mva1269I	GAATGC	1 cut(s)	390
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	705
NciI	CCSGG	2 cut(s)	795, 827
NcoI	CCATGG	1 cut(s)	1026
NdeII	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
NlaIII	CATG	6 cut(s)	25, 433, 742, 958, 1030, 1135
NlaIV	GGNNCC	3 cut(s)	427, 570, 603
NmuCI	GTSAC	2 cut(s)	226, 1176
PagI	TCATGA	1 cut(s)	954
PaqCI	CACCTGC	1 cut(s)	932
PctI	GAATGC	1 cut(s)	390
PdmI	GAANNNNTTC	2 cut(s)	719, 972
PfeI	GAWTC	6 cut(s)	53, 77, 607, 720, 752, 798
PfoI	TCCNGGA	1 cut(s)	793
PinAI	ACCGGT	2 cut(s)	10, 467
PkrI	GCNGC	5 cut(s)	336, 666, 701, 881, 1111
Psp124BI	GAGCTC	1 cut(s)	642
PspFI	CCCAGC	3 cut(s)	509, 596, 833
PspN4I	GGNNCC	3 cut(s)	427, 570, 603
PspPI	GGNCC	3 cut(s)	460, 465, 874
PsuI	RGATCY	2 cut(s)	568, 627
PvuII	CAGCTG	2 cut(s)	190, 509
RsaI	GTAC	7 cut(s)	5, 112, 399, 436, 527, 581, 865
RsaNI	GTAC	7 cut(s)	4, 111, 398, 435, 526, 580, 864
RseI	CAYNNNNRTG	3 cut(s)	546, 1104, 1136
Rsr2I	CGGWCCG	1 cut(s)	465
RsrII	CGGWCCG	1 cut(s)	465
SacI	GAGCTC	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	236, 489
SatI	GCNGC	5 cut(s)	335, 665, 700, 880, 1110
Sau3AI	GATC	7 cut(s)	325, 568, 627, 787, 979, 1076, 1093
Sau96I	GGNCC	3 cut(s)	460, 465, 874
ScaI	AGTACT	2 cut(s)	112, 436
ScrFI	CCNGG	2 cut(s)	795, 827
SduI	GDGCHC	3 cut(s)	44, 604, 642
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	1159
SinI	GGWCC	3 cut(s)	460, 465, 874
SmiMI	CAYNNNNRTG	3 cut(s)	546, 1104, 1136
Sse9I	AATT	5 cut(s)	233, 724, 968, 1057, 1184
SsiI	CCGC	5 cut(s)	266, 370, 380, 877, 880
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	2 cut(s)	114, 1195
SstI	GAGCTC	1 cut(s)	642
StyD4I	CCNGG	2 cut(s)	793, 825
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	4 cut(s)	407, 487, 584, 782
TaqI	TCGA	2 cut(s)	632, 801
TasI	AATT	5 cut(s)	233, 724, 968, 1057, 1184
TatI	WGTACW	3 cut(s)	3, 110, 434
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	6 cut(s)	53, 77, 607, 720, 752, 798
Tru1I	TTAA	2 cut(s)	236, 489
Tru9I	TTAA	2 cut(s)	236, 489
TscAI	CASTG	1 cut(s)	1159
TseFI	GTSAC	2 cut(s)	226, 1176
TseI	GCWGC	4 cut(s)	334, 664, 699, 1109
Tsp45I	GTSAC	2 cut(s)	226, 1176
TspDTI	ATGAA	6 cut(s)	530, 674, 675, 971, 981, 1038
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	1159
VpaK11BI	GGWCC	3 cut(s)	460, 465, 874
XapI	RAATTY	1 cut(s)	968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmnI	GAANNNNTTC	2 cut(s)	719, 972
XspI	CTAG	2 cut(s)	114, 1195
ZrmI	AGTACT	2 cut(s)	112, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.