Rh6BG070100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013605
Physical Location & Seq
Forward (+)
10624444 .. 10626967
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG070100.1

Sequence Viewer

Length: 951 bp
ATGTACAGACCGGTGATGCTCATGGCCTCAGATTACCAGAGCACAACCCAAGATTCTTCCCGTTTTGGGTGCGAAGAATCCAAAAAACCCGAAACCACCACCAAAACCAGTACTAGCAGCAAAGGAAAATCAAGGAAGTCAGCTAAACCTAAAAGGCCAAAGCCCCAGAGAGGTGTTGGTGTGGCTCAGCTGGAGCGCCTCCGTCTCCAACAGAGAGGTGTGGGTGTGACCAAATTAACCCAAATGCCCCTCCCCCATATCCTACCGCAACCTCAACCTCAGACCCAAGTTGTCCAAAATGTCGGTTTTCCAGATCACCAGCAGCGCCGGTTTCAATACTACCCAAACCCAGAAACCCGCGCCGACCCGCTTCTCAGCATTCCGGTACTCTACGGTGCGTCCAACTACGATGGAGCCATGAGTACTGGCTCTGGTTTGGTGGGCTTGGACCGGACCGGTTTGTTGGTTCAGACAGTTAATGGGAATGGTGGTTCAGCTGGGTTTGGTTATGGGTACAATGTTCGTCTTCATAATGATGTTGGTGGGTTGGTTATGGATCCGAACGAGTACGGTGTCGTTGGGGCTGGGGCTCCGAATCGTGGGGCTGTGTATGAGATCTCGAACGAGCTCTCTTCAATACCAAAGATGAAGCAGCAACCCTCCTCTTCTTCTTCATCTGAATATTGCTGCTGTTGCAAGCAGAAGAAAAGATTCAATTGTGGAAACAACATGGGTTTTGGGGAATCTCCGGCTGTCTTTCCGATGGTCAACAGTTCTGATCTTCCCGGATTCGACCAACAAAACATCCCAAATGTCCGGGTAGCTGGGGAAATCGGCGTTGGTTTCAATGCTGGTACTTACTTGGACCGCCGCTCCAGTCTTGTTGATGAGGTAATTAAACTAAATCACCACCAAAAAAAAAAAATCCTACATTTTGATTTGAATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NOZZLE

Protein Analysis

316

Amino Acids

34.57

Weight (kDa)

9.5

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 873
AccII CGCG 1 cut(s) 360
AciI CCGC 5 cut(s) 266, 358, 368, 868, 871
AclWI GGATC 2 cut(s) 551, 564
AfaI GTAC 7 cut(s) 5, 112, 387, 424, 515, 569, 856
AfiI CCNNNNNNNGG 3 cut(s) 66, 170, 599
AgeI ACCGGT 2 cut(s) 10, 455
AgsI TTSAA 5 cut(s) 335, 636, 715, 847, 943
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
AloI GAACNNNNNNTCC 2 cut(s) 475, 507
AluBI AGCT 5 cut(s) 143, 190, 497, 628, 824
AluI AGCT 5 cut(s) 143, 190, 497, 628, 824
Alw21I GWGCWC 2 cut(s) 44, 630
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 2 cut(s) 551, 564
AoxI GGCC 2 cut(s) 24, 155
ApeKI GCWGC 4 cut(s) 117, 322, 652, 687
AsiGI ACCGGT 2 cut(s) 10, 455
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 3 cut(s) 198, 327, 362
AspS9I GGNCC 3 cut(s) 448, 453, 865
AsuC2I CCSGG 2 cut(s) 786, 818
AsuHPI GGTGA 3 cut(s) 25, 308, 899
AvaII GGWCC 3 cut(s) 448, 453, 865
BamHI GGATCC 1 cut(s) 556
BanII GRGCYC 2 cut(s) 592, 630
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 2 cut(s) 44, 630
BbvI GCAGC 4 cut(s) 129, 334, 664, 674
BccI CCATC 2 cut(s) 404, 757
BcnI CCSGG 2 cut(s) 786, 818
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 2 cut(s) 199, 328
BglII AGATCT 1 cut(s) 615
BisI GCNGC 5 cut(s) 118, 323, 653, 688, 871
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 5 cut(s) 119, 324, 654, 689, 872
BmcAI AGTACT 2 cut(s) 112, 424
Bme1390I CCNGG 2 cut(s) 786, 818
Bme18I GGWCC 3 cut(s) 448, 453, 865
BmgT120I GGNCC 3 cut(s) 448, 453, 865
BmiI GGNNCC 3 cut(s) 415, 558, 591
BmrFI CCNGG 2 cut(s) 786, 818
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 212, 859
Bpu1102I GCTNAGC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 786, 818
Bsa29I ATCGAT 1 cut(s) 946
BsaBI GATNNNNATC 1 cut(s) 942
BsaWI WCCGGW 4 cut(s) 10, 382, 450, 455
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 170, 599
Bse118I RCCGGY 3 cut(s) 10, 327, 455
Bse1I ACTGG 3 cut(s) 108, 430, 876
Bse8I GATNNNNATC 1 cut(s) 942
BseCI ATCGAT 1 cut(s) 946
BseGI GGATG 1 cut(s) 804
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 3 cut(s) 66, 170, 599
BseMII CTCAG 4 cut(s) 42, 200, 293, 388
BseNI ACTGG 3 cut(s) 108, 430, 876
BseRI GAGGAG 1 cut(s) 652
BseXI GCAGC 4 cut(s) 129, 334, 664, 674
BseYI CCCAGC 3 cut(s) 497, 584, 824
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 2 cut(s) 26, 157
BshTI ACCGGT 2 cut(s) 10, 455
BshVI ATCGAT 1 cut(s) 946
BsiHKAI GWGCWC 2 cut(s) 44, 630
BsiSI CCGG 8 cut(s) 11, 328, 383, 451, 456, 749, 786, 817
BslI CCNNNNNNNGG 3 cut(s) 66, 170, 599
BsmAI GTCTC 1 cut(s) 209
BsmBI CGTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 2 cut(s) 26, 157
Bsp1286I GDGCHC 3 cut(s) 44, 592, 630
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 313, 556, 615, 778
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 5 cut(s) 266, 358, 368, 868, 871
BspANI GGCC 2 cut(s) 26, 157
BspCNI CTCAG 4 cut(s) 41, 199, 292, 387
BspDI ATCGAT 1 cut(s) 946
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 415, 558, 591
BspPI GGATC 2 cut(s) 551, 564
BsrBI CCGCTC 1 cut(s) 873
BsrFI RCCGGY 3 cut(s) 10, 327, 455
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 108, 430, 876
BssAI RCCGGY 3 cut(s) 10, 327, 455
BssMI GATC 4 cut(s) 313, 556, 615, 778
Bst4CI ACNGT 4 cut(s) 395, 475, 572, 773
Bst6I CTCTTC 2 cut(s) 637, 670
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 698
BstDEI CTNAG 4 cut(s) 28, 186, 279, 374
BstF5I GGATG 1 cut(s) 804
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 2 cut(s) 199, 328
BstHHI GCGC 3 cut(s) 198, 327, 362
BstKTI GATC 4 cut(s) 316, 559, 618, 781
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 4 cut(s) 313, 556, 615, 778
BstMWI GCNNNNNNNGC 1 cut(s) 693
BstSCI CCNGG 2 cut(s) 784, 816
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 4 cut(s) 129, 334, 664, 674
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 2 cut(s) 556, 615
BstYI RGATCY 2 cut(s) 556, 615
Bsu15I ATCGAT 1 cut(s) 946
BsuRI GGCC 2 cut(s) 26, 157
BsuTUI ATCGAT 1 cut(s) 946
BtsCI GGATG 1 cut(s) 804
Cac8I GCNNGC 1 cut(s) 698
CfoI GCGC 3 cut(s) 198, 327, 362
Cfr10I RCCGGY 3 cut(s) 10, 327, 455
Cfr13I GGNCC 3 cut(s) 448, 453, 865
ClaI ATCGAT 1 cut(s) 946
CpoI CGGWCCG 1 cut(s) 453
CseI GACGC 1 cut(s) 387
Csp6I GTAC 7 cut(s) 4, 111, 386, 423, 514, 568, 855
CspAI ACCGGT 2 cut(s) 10, 455
CspI CGGWCCG 1 cut(s) 453
CviAII CATG 3 cut(s) 22, 418, 730
CviQI GTAC 7 cut(s) 4, 111, 386, 423, 514, 568, 855
DdeI CTNAG 4 cut(s) 28, 186, 279, 374
DpnI GATC 4 cut(s) 315, 558, 617, 780
DpnII GATC 4 cut(s) 313, 556, 615, 778
Eam1104I CTCTTC 2 cut(s) 637, 670
EarI CTCTTC 2 cut(s) 637, 670
Ecl136II GAGCTC 1 cut(s) 628
Eco24I GRGCYC 2 cut(s) 592, 630
Eco47I GGWCC 3 cut(s) 448, 453, 865
Eco53kI GAGCTC 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 592, 630
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 3 cut(s) 25, 421, 733
FaiI YATR 8 cut(s) 23, 258, 419, 510, 531, 554, 612, 731
FatI CATG 3 cut(s) 21, 417, 729
FauI CCCGC 2 cut(s) 365, 375
Fnu4HI GCNGC 5 cut(s) 118, 323, 653, 688, 871
FokI GGATG 1 cut(s) 791
FriOI GRGCYC 2 cut(s) 592, 630
Fsp4HI GCNGC 5 cut(s) 118, 323, 653, 688, 871
FspBI CTAG 1 cut(s) 114
GlaI GCGC 3 cut(s) 197, 326, 361
GluI GCNGC 5 cut(s) 118, 323, 653, 688, 871
GsaI CCCAGC 3 cut(s) 501, 588, 828
GsuI CTGGAG 2 cut(s) 212, 859
HaeII RGCGCY 2 cut(s) 199, 328
HaeIII GGCC 2 cut(s) 26, 157
HapII CCGG 8 cut(s) 11, 328, 383, 451, 456, 749, 786, 817
HgaI GACGC 1 cut(s) 387
HhaI GCGC 3 cut(s) 198, 327, 362
Hin1II CATG 3 cut(s) 25, 421, 733
Hin6I GCGC 3 cut(s) 196, 325, 360
HinP1I GCGC 3 cut(s) 196, 325, 360
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 7 cut(s) 53, 77, 595, 711, 743, 789, 943
HpaII CCGG 8 cut(s) 11, 328, 383, 451, 456, 749, 786, 817
HphI GGTGA 3 cut(s) 25, 308, 899
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 8 cut(s) 31, 282, 471, 561, 594, 679, 762, 778
Hpy188III TCNNGA 2 cut(s) 311, 619
Hpy8I GTNNAC 1 cut(s) 769
HpyCH4III ACNGT 4 cut(s) 395, 475, 572, 773
HpyCH4V TGCA 1 cut(s) 696
HpyF10VI GCNNNNNNNGC 1 cut(s) 693
HpyF3I CTNAG 4 cut(s) 28, 186, 279, 374
Hsp92II CATG 3 cut(s) 25, 421, 733
HspAI GCGC 3 cut(s) 196, 325, 360
Kzo9I GATC 4 cut(s) 313, 556, 615, 778
LmnI GCTCC 4 cut(s) 193, 413, 595, 878
Lsp1109I GCAGC 4 cut(s) 129, 334, 664, 674
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 315, 558, 617, 780
MbiI CCGCTC 1 cut(s) 873
MboI GATC 4 cut(s) 313, 556, 615, 778
MboII GAAGA 9 cut(s) 48, 86, 518, 624, 657, 660, 663, 715, 773
MfeI CAATTG 1 cut(s) 715
MflI RGATCY 2 cut(s) 556, 615
MhlI GDGCHC 3 cut(s) 44, 592, 630
MluCI AATT 3 cut(s) 233, 715, 894
MmeI TCCRAC 2 cut(s) 232, 426
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 3 cut(s) 236, 477, 897
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 2 cut(s) 190, 497
MspI CCGG 8 cut(s) 11, 328, 383, 451, 456, 749, 786, 817
MspR9I CCNGG 2 cut(s) 786, 818
MunI CAATTG 1 cut(s) 715
Mva1269I GAATGC 1 cut(s) 378
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 693
NciI CCSGG 2 cut(s) 786, 818
NdeII GATC 4 cut(s) 313, 556, 615, 778
NlaIII CATG 3 cut(s) 25, 421, 733
NlaIV GGNNCC 3 cut(s) 415, 558, 591
NmuCI GTSAC 1 cut(s) 226
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 7 cut(s) 53, 77, 595, 711, 743, 789, 943
PfoI TCCNGGA 1 cut(s) 784
PinAI ACCGGT 2 cut(s) 10, 455
PkrI GCNGC 5 cut(s) 119, 324, 654, 689, 872
Psp124BI GAGCTC 1 cut(s) 630
PspFI CCCAGC 3 cut(s) 497, 584, 824
PspN4I GGNNCC 3 cut(s) 415, 558, 591
PspPI GGNCC 3 cut(s) 448, 453, 865
PsuI RGATCY 2 cut(s) 556, 615
PvuII CAGCTG 2 cut(s) 190, 497
RsaI GTAC 7 cut(s) 5, 112, 387, 424, 515, 569, 856
RsaNI GTAC 7 cut(s) 4, 111, 386, 423, 514, 568, 855
RseI CAYNNNNRTG 1 cut(s) 534
Rsr2I CGGWCCG 1 cut(s) 453
RsrII CGGWCCG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 3 cut(s) 236, 477, 897
SatI GCNGC 5 cut(s) 118, 323, 653, 688, 871
Sau3AI GATC 4 cut(s) 313, 556, 615, 778
Sau96I GGNCC 3 cut(s) 448, 453, 865
ScaI AGTACT 2 cut(s) 112, 424
ScrFI CCNGG 2 cut(s) 786, 818
SduI GDGCHC 3 cut(s) 44, 592, 630
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 3 cut(s) 448, 453, 865
SmiMI CAYNNNNRTG 1 cut(s) 534
Sse9I AATT 3 cut(s) 233, 715, 894
SsiI CCGC 5 cut(s) 266, 358, 368, 868, 871
SspI AATATT 1 cut(s) 683
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 2 cut(s) 784, 816
TaaI ACNGT 4 cut(s) 395, 475, 572, 773
TaqI TCGA 3 cut(s) 620, 792, 946
TasI AATT 3 cut(s) 233, 715, 894
TatI WGTACW 3 cut(s) 3, 110, 422
TauI GCSGC 1 cut(s) 873
TfiI GAWTC 7 cut(s) 53, 77, 595, 711, 743, 789, 943
Tru1I TTAA 3 cut(s) 236, 477, 897
Tru9I TTAA 3 cut(s) 236, 477, 897
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 117, 322, 652, 687
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 518, 662, 663
TspGWI ACGGA 1 cut(s) 191
VpaK11BI GGWCC 3 cut(s) 448, 453, 865
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 2 cut(s) 112, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.