FvH4_3g04580

SNF2 family N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004421
Physical Location & Seq
Forward (+)
2618718 .. 2631807
13090 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04580.t1

Sequence Viewer

Length: 4365 bp
ATGTTGACGGCGGAGGATGGTTCTAATTGGAGCGACGCACCGGGCGCCGCCGGTGAATTTACCGGCGATGATTTCGACGTCGACGGCGAGGACATGTGCATGGATCTCGATTCGTTATATCGTATTCTCGATGAAGAGCCTCAGAGTTGTCCGGAGGATTCATTACTGGGAACCGGATTGCAAGGTGAGGCAGTTTCAGGTGATGGTTACCGTGAGGATACGCAGCTACAAAGTGGATCACAAGTTTTAGAAGCAGAACCATCAGCTGATATAGTGGGGCCTGGTTCATGGCATCCTCCATACAGCTCTGAAGCTTCGGATTCTGGGGAAGGGGGTCCGGGTGGTTCGTTTGATTCTGCTGGGAATCCTGCAATGGTCTTTGACTACAATGATAGCATACCAGCAGCACACACTGGCTCTCCTGGTCCATGGCATCCTTCGTATATCTCAGAAGCATCAGATTCTGTGGCAGGGGGTCCAGGGTGTTCTTTTGAATCTGGAGGGAACCCTGCTATGGATTTTGAAAGAGAACCACCAGCACAGACCGGCTCTCCTGGGAATGTGTACCCTGCAGGTCTTCAAGACTGGATTTCGTTGGCTCCATGCCCGGAGACTGACTTCACTGAGAGGGTTGGCGTTTCACAGCCCACTTGTAGCACCACTTCTAGTTTTGAAGACGTACACCATGCTTTAAACCGAGGAGATCTCAATATCCTGCAGGGGAAAGCAGATCTGGCAGGGAAAGTTGATTCTGAATATTCTTCACAAAGCATTGGCATTGATAACATGGACATGAGTTCCAGACCTTATGGTGCTTTCGGGGAAAACACCACAGAATCCTTGGGACCATCGGAAAATAATTCTTGTACATCTATGGAAGTGCCCATTCTAGATGTTGATATATGTTCACCACATGTTACTTCTACCGAGTCCACTCTCTGTCAAGATTCTGATCTTTTCAGTGACCACTATACAGCTACAGATGGTATGAGCTTTGACAATACATATTTGGCAGAGTCCTCAGTCCAGCATAGTCCTTATAGCTACTGTACATTTTATCCAAGTAACAAAGAAATGATGACTAATGTGAAGAATGAATCAGTGGAGTTTCAAACTGATAGTTCATGCTCAAGCAGTAAGATGAATATAAATTGTCAGGAGGGAATAATTGGTGCATATAGCTTTGATTCGCCAATGATTGATGCCTCAGATATGAAGGACTGGAATTTTGATTATGGAAGTCTTAATTGTATTTCGGCAGTTAGTGGGAAATCTTCTTTGGATACTCACTCTTGTCCTGTTGATAACAAGGCATCGGTCAAGCCTTTGGGTTTTACTAAGACTTACATGTCAAGCGAACGGGAATTCCATGGAGTGAAGGATGAAAATATTAATGAGTTGGGTGCTCCTAGTACCGATATGTTTCATTCTTTTTCATTCATGGATGACAGTAGAATATCGTCTTACAATGTTGATGGTAGTTATTTTGATAAGGAACCAAAGCTCGCAGGTTATGATGTACCTACTCAGCCATTTGGAAAATTAGTGTGCACTGAGGAAGACATGATTGTTGACAGTAAGAGAACTTTTTCCAAGGGTATTATATCTCATATTGGTGGTGGATCTGGGAATCTAAATGGTTTGGAATATCAGTTTCCAGCTGCTCAGCCATTCTCTTCAAACAAGAATCAGGGTTACAATATGGACAGACTTGAAGCTGTACGCTCTCTGCCTGAAACCATGGGTTTTCCTCCTTCAAAAGTCAGCCCTGAGTCTATTCATAGTAACTCCTCAGAAAAATCCCCTGCAGAAGATGACTATGATGTATGCATTATTGAAGATATCAGTGATCCTGCACCCATGCATCGCCTTCCAGTGGTTAGCAATACTCGTTACCCTGCGCCCTTGAATCGCCCTCTAGCAGTTGGAAGTAACATTGTCAGTTCACAACAATCTAGTGATCACGACACTGGGGTAGGAGGAATGCGATTCAGGACAAGGGATGAGCAATTGATCTTGAGAGTAGCATTACAGGACCTTTCACAGCCCAAGTCAGAAGCCCTTCCACCAGATGGAGTTTTAACAGTACCTCTCTTACGACACCAGAGAATTGCATTGTCATGGATGGTTCAGAAGGAGACAGCTAGCTTGCATTGTTCTGGAGGAATTCTTGCAGATGATCAGGGATTGGGAAAAACGATATCGACAATTGCACTCATACTTAAGGAAAGGCCTCCTGCTTCTGGAGCCTGTCAAGATGAAAAAAAGTGCAAGCTGGAAACTCTGGATTTGGACATGGATGATGATGATATGCTTCCTGAGGTTAGCAGAAGGAAGCAAGATACTGATGCTCATTCAAGTGTTTCAAATGAGTCTTCCGAAATGAGCATGAAATCCTTGACACAAACAAAGGGAAGGCTAGCTTGTGGAACACTCGTTGTGTGCCCCACAAGTGTCTTGCGGCAGTGGGCAGAGGAGTTGCGTAATAAGGTAACAGAAAAAGGTAAACTCTCGGTGTTAGTCTACCATGGAGGCAATCGAACGAGGGATCCGTGTGAACTAGCTAAGTATGATGTTGTCCTCACAACATATTCAATTGTCAGCATGGAGGTCCCAAAGCAGCCTCTTGCTGATGGAAAAGATGAGGAGAAAGGAAAGCAAGAGGACTATGATTTTCCACATATGGGGTTTTCATCTAAAAAAAGGAAATATCCTAATAAATGCTCAAAGGGTAAGAAGAGATTGGAGACTGCAGTGCTGGAGTCTCTTGCTCGCCCTCTTGCTAAGGTTGGATGGTTTAGGGTTGTCTTGGATGAAGCCCAGAGTATCAAAAATCACAGAACTCAAGTAGCTAGGGCCTGTTGGGGGCTTCGAGCGAAACGTAGGTGGTGCTTATCGGGGACACCTATCCAGAATGCGATTGATGATCTTTATAGCTACTTCAGATTTCTGAGATATGACCCCTATGCAGTCTACCAGATGTTCTGCACAACAATAAAAATTCCAATCAGCAAAAACCCAACAAAAGGGTACAAAAAGCTACAAGCTGTTCTGAAGACAATTATGTTACGCCGCACAAAAGGCACACTTCTTGATGGAGAACCTATAATTAGTTTACCACCAAAATTCATAGAATTGAAAAGGGTGGAATTCTCAGATGAAGAACGAGATTTTTACTCCAGGCTAGAGTGTGATTCACGCGCTCAATTTGAAGAATATGCAGCTGCTGGAACTGTGAAACAAAATTATGTTAATATTTTATTGATGCTGTTGCGACTTCGACAAGCTTGTGATCACCCTCTTCTTGTCAGACGTTATGAATCACAGTCTTTGTGGAAATCTTCTATTGAGAAGGCGCAGAAGCTTCCTCATGAAAAACAAGTATCCCTTGTGAAGTGTTTGGAAGCTTCATTGGCAATTTGCGGCATCTGCAATGATGCGCCAGAAGATGCTGTTGTTTCTGAATGTGGTCATGTCTTCTGTAGCCAATGCATTGGTGACTATCTCACAGGTGATGAGAACCAGTGCCCCCACACAAGTTGCAAAGTTCGACTGAATGTGTCTTCAGTGTTTTCAAAATCCACGTTAACCAGTTCACTTTCTGACCAACCTAGTCAAGGGGGAATGGATTCTGAAGTTTTTGATGCTGTAGAGTCTTTCTATGAAGATAGCTCGTACAATTCTTCCAAGATTAAGGCTGCGCTTGAGGTTCTCTGCTCGAAGTGTAAACCAAAGATTTGCACTACAGAAAATAGTTGTTTACCGGAAAACTGTGATAAAAATGCCAGCTGCTCTACAACTTCTGATATTGATGGGGCTGAGTCACTTGAGGACGGTTCTGATGGACAAAACCTGGATGTGGACAGAAGTCCTAAGAAAATTGAGAAGGTAGTTCGAGAGAAAGCAATAGTCTTTTCACAGTGGACTAGGATGCTGGACTTGCTTGAAGCATCTCTTAAAACTTCTGGCCTCGAGTACAGAAGACTTGATGGAACAATGTCAGTTGTTGCCAGAGATAAAGCTGTAAAGGATTTTAACTCTCTTCCAGAGGTGTCAGTTATGATCATGTCTTTGAAAGCCGCCAGTCTTGGTCTGAACATGGTTGCAGCCTGTCATGTACTTCTTTTGGACCTGTGGTGGAATCCTACGACAGAAGATCAAGCAATTGATAGAGCACATCGTATTGGGCAGACTCGTCCTGTTACAGTTTTACGGTTGACTGTGAAAAATACAGTCGAAGATCGTATATTAGCTCTTCAGGAAAAAAAGAGAGAGATGGTGGCATCTGCTTTTGGAGAGGATGAAACTGGTGGTCGTCAGACTCGCTTAACAGTTGATGATCTCAAGTACCTGTTTATGAAGTGA

Protein Analysis

1455

Amino Acids

159.79

Weight (kDa)

4.89

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 701 - 1100 5.7e-66 SNF2-related domain
zf-C3HC4_3 PF13920 1140 - 1178 2.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 1141 - 1177 3.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 1141 - 1177 3.3e-08 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 1297 - 1396 1.4e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1348
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 2 cut(s) 563, 1499
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 2072
AccI GTMKAC 3 cut(s) 81, 2523, 2973
AccII CGCG 1 cut(s) 3201
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 6 cut(s) 11, 48, 2461, 3073, 3423, 4080
AclWI GGATC 6 cut(s) 111, 244, 1630, 1844, 2543, 2556
AcsI RAATTY 7 cut(s) 56, 1225, 1364, 2166, 3000, 3125, 3149
AcuI CTGAAG 6 cut(s) 330, 2926, 3074, 3549, 3654, 4241
AcyI GRCGYC 2 cut(s) 45, 78
AfiI CCNNNNNNNGG 9 cut(s) 514, 1876, 2072, 2243, 2684, 2865, 3026, 3617, 3859
AflII CTTAAG 1 cut(s) 2222
AflIII ACRYGT 3 cut(s) 93, 913, 1347
AjnI CCWGG 6 cut(s) 280, 421, 478, 553, 3179, 3852
AjuI GAANNNNNNNTTGG 2 cut(s) 1262, 1294
AloI GAACNNNNNNTCC 4 cut(s) 1350, 1382, 2533, 2565
Alw21I GWGCWC 3 cut(s) 1408, 1553, 4177
Alw26I GTCTC 4 cut(s) 605, 2132, 2741, 2769
Alw44I GTGCAC 1 cut(s) 1549
AlwI GGATC 6 cut(s) 111, 244, 1630, 1844, 2543, 2556
AlwNI CAGNNNCTG 2 cut(s) 464, 3227
Ama87I CYCGRG 1 cut(s) 3971
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 4 cut(s) 278, 2231, 2856, 3967
ApaLI GTGCAC 1 cut(s) 1549
ApeKI GCWGC 9 cut(s) 223, 404, 1661, 2620, 3221, 3224, 3698, 3789, 4106
ApoI RAATTY 7 cut(s) 56, 1225, 1364, 2166, 3000, 3125, 3149
ArsI GACNNNNNNTTYG 2 cut(s) 1211, 1243
AseI ATTAAT 1 cut(s) 1392
Asp700I GAANNNNTTC 3 cut(s) 1588, 2061, 3628
AspLEI GCGC 6 cut(s) 47, 1903, 3203, 3358, 3442, 3703
AspS9I GGNCC 9 cut(s) 278, 335, 425, 476, 845, 2035, 2611, 2856, 4129
AsuC2I CCSGG 3 cut(s) 42, 339, 608
AsuHPI GGTGA 7 cut(s) 65, 197, 212, 900, 3287, 3509, 3524
AsuNHI GCTAGC 2 cut(s) 2144, 2419
AvaI CYCGRG 1 cut(s) 3971
AvaII GGWCC 7 cut(s) 335, 425, 476, 845, 2035, 2611, 4129
AxyI CCTNAGG 1 cut(s) 2319
BaeGI GKGCMC 4 cut(s) 885, 1553, 2447, 3530
BamHI GGATCC 1 cut(s) 2548
BanI GGYRCC 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 646, 678
BbsI GAAGAC 8 cut(s) 569, 681, 1566, 2367, 3062, 3469, 3555, 3988
Bbv12I GWGCWC 3 cut(s) 1408, 1553, 4177
BbvI GCAGC 9 cut(s) 235, 416, 1648, 2632, 3211, 3233, 3685, 3776, 4118
BceAI ACGGC 2 cut(s) 24, 100
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 6 cut(s) 282, 423, 480, 555, 3181, 3854
BciVI GTATCC 3 cut(s) 211, 1276, 3394
BclI TGATCA 4 cut(s) 1960, 2179, 3292, 4062
BcnI CCSGG 3 cut(s) 42, 339, 608
BcoDI GTCTC 4 cut(s) 605, 2132, 2741, 2769
BfmI CTRYAG 8 cut(s) 570, 716, 978, 1806, 2751, 3481, 3648, 3744
BfoI RGCGCY 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 2222
BfuAI ACCTGC 2 cut(s) 563, 1499
BfuI GTATCC 3 cut(s) 211, 1276, 3394
BglII AGATCT 2 cut(s) 703, 730
BlpI GCTNAGC 1 cut(s) 1665
Bme1390I CCNGG 9 cut(s) 42, 282, 339, 423, 480, 555, 608, 3181, 3854
Bme18I GGWCC 7 cut(s) 335, 425, 476, 845, 2035, 2611, 4129
BmeT110I CYCGRG 1 cut(s) 3971
BmgT120I GGNCC 9 cut(s) 278, 335, 425, 476, 845, 2035, 2611, 2856, 4129
BmrFI CCNGG 9 cut(s) 42, 282, 339, 423, 480, 555, 608, 3181, 3854
BmrI ACTGGG 2 cut(s) 176, 1980
BmtI GCTAGC 2 cut(s) 2148, 2423
BmuI ACTGGG 2 cut(s) 176, 1980
BoxI GACNNNNGTC 1 cut(s) 3867
BpiI GAAGAC 8 cut(s) 569, 681, 1566, 2367, 3062, 3469, 3555, 3988
BplI GAGNNNNNCTC 2 cut(s) 690, 722
BpmI CTGGAG 5 cut(s) 519, 2181, 2265, 2780, 3163
Bpu10I CCTNAGC 1 cut(s) 2784
Bpu1102I GCTNAGC 1 cut(s) 1665
BpuEI CTTGAG 6 cut(s) 1114, 2038, 2829, 3725, 3848, 4328
BpuMI CCSGG 3 cut(s) 42, 339, 608
BsaBI GATNNNNATC 1 cut(s) 951
BsaHI GRCGYC 2 cut(s) 45, 78
BsaJI CCNNGG 9 cut(s) 428, 479, 554, 697, 840, 1369, 1593, 1740, 2527
BsaWI WCCGGW 3 cut(s) 151, 173, 3763
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 535, 565
Bsc4I CCNNNNNNNGG 9 cut(s) 514, 1876, 2072, 2243, 2684, 2865, 3026, 3617, 3859
Bse118I RCCGGY 3 cut(s) 50, 62, 545
Bse21I CCTNAGG 1 cut(s) 2319
Bse3DI GCAATG 2 cut(s) 378, 3439
Bse8I GATNNNNATC 1 cut(s) 951
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 6 cut(s) 282, 423, 480, 555, 3181, 3854
BseDI CCNNGG 9 cut(s) 428, 479, 554, 697, 840, 1369, 1593, 1740, 2527
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 9 cut(s) 514, 1876, 2072, 2243, 2684, 2865, 3026, 3617, 3859
BseMI GCAATG 2 cut(s) 378, 3439
BseRI GAGGAG 4 cut(s) 714, 1780, 2489, 2660
BseSI GKGCMC 4 cut(s) 885, 1553, 2447, 3530
BseXI GCAGC 9 cut(s) 235, 416, 1648, 2632, 3211, 3233, 3685, 3776, 4118
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 2 cut(s) 1839, 2971
Bsh1236I CGCG 1 cut(s) 3201
BshFI GGCC 4 cut(s) 280, 2233, 2858, 3969
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 3 cut(s) 1408, 1553, 4177
BsiHKCI CYCGRG 1 cut(s) 3971
BsiSI CCGG 9 cut(s) 41, 51, 63, 152, 174, 338, 546, 608, 3764
BslFI GGGAC 3 cut(s) 858, 2597, 2914
BslI CCNNNNNNNGG 9 cut(s) 514, 1876, 2072, 2243, 2684, 2865, 3026, 3617, 3859
BsmAI GTCTC 4 cut(s) 605, 2132, 2741, 2769
BsmFI GGGAC 3 cut(s) 858, 2597, 2914
BsmI GAATGC 2 cut(s) 1989, 2920
BsnI GGCC 4 cut(s) 280, 2233, 2858, 3969
BsoBI CYCGRG 1 cut(s) 3971
Bsp1286I GDGCHC 6 cut(s) 885, 1408, 1553, 2447, 3530, 4177
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 2 cut(s) 866, 1049
Bsp1720I GCTNAGC 1 cut(s) 1665
Bsp19I CCATGG 4 cut(s) 428, 1369, 1740, 2527
BspACI CCGC 6 cut(s) 11, 48, 2461, 3073, 3423, 4080
BspANI GGCC 4 cut(s) 280, 2233, 2858, 3969
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 3201
BspHI TCATGA 1 cut(s) 3370
BspMAI CTGCAG 4 cut(s) 574, 720, 1810, 2755
BspMI ACCTGC 2 cut(s) 563, 1499
BspOI GCTAGC 2 cut(s) 2148, 2423
BspPI GGATC 6 cut(s) 111, 244, 1630, 1844, 2543, 2556
BspQI GCTCTTC 2 cut(s) 129, 4260
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 2222
BsrDI GCAATG 2 cut(s) 378, 3439
BsrFI RCCGGY 3 cut(s) 50, 62, 545
BsrGI TGTACA 2 cut(s) 866, 1049
BssAI RCCGGY 3 cut(s) 50, 62, 545
BssECI CCNNGG 9 cut(s) 428, 479, 554, 697, 840, 1369, 1593, 1740, 2527
BssNI GRCGYC 2 cut(s) 45, 78
BssT1I CCWWGG 6 cut(s) 428, 840, 1369, 1593, 1740, 2527
Bst2UI CCWGG 6 cut(s) 282, 423, 480, 555, 3181, 3854
Bst6I CTCTTC 6 cut(s) 129, 1681, 2732, 3306, 4047, 4260
BstACI GRCGYC 2 cut(s) 45, 78
BstAFI CTTAAG 1 cut(s) 2222
BstAUI TGTACA 2 cut(s) 866, 1049
BstC8I GCNNGC 7 cut(s) 1506, 2146, 2150, 2273, 2421, 2773, 3787
BstDSI CCRYGG 4 cut(s) 428, 1369, 1740, 2527
BstEII GGTNACC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 3615
BstFNI CGCG 1 cut(s) 3201
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 6 cut(s) 47, 1903, 3203, 3358, 3442, 3703
BstMAI GTCTC 4 cut(s) 605, 2132, 2741, 2769
BstMWI GCNNNNNNNGC 7 cut(s) 44, 734, 2246, 3081, 3413, 3429, 3940
BstNI CCWGG 6 cut(s) 282, 423, 480, 555, 3181, 3854
BstNSI RCATGY 3 cut(s) 97, 917, 1351
BstPAI GACNNNNGTC 1 cut(s) 3867
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 9 cut(s) 40, 280, 337, 421, 478, 553, 606, 3179, 3852
BstSFI CTRYAG 8 cut(s) 570, 716, 978, 1806, 2751, 3481, 3648, 3744
BstSLI GKGCMC 4 cut(s) 885, 1553, 2447, 3530
BstUI CGCG 1 cut(s) 3201
BstV1I GCAGC 9 cut(s) 235, 416, 1648, 2632, 3211, 3233, 3685, 3776, 4118
BstV2I GAAGAC 8 cut(s) 569, 681, 1566, 2367, 3062, 3469, 3555, 3988
BstX2I RGATCY 5 cut(s) 103, 703, 730, 1622, 2548
BstXI CCANNNNNNTGG 1 cut(s) 3494
BstYI RGATCY 5 cut(s) 103, 703, 730, 1622, 2548
Bsu36I CCTNAGG 1 cut(s) 2319
BsuI GTATCC 3 cut(s) 211, 1276, 3394
BsuRI GGCC 4 cut(s) 280, 2233, 2858, 3969
BtgI CCRYGG 4 cut(s) 428, 1369, 1740, 2527
BtgZI GCGATG 2 cut(s) 81, 1850
BtsI GCAGTG 2 cut(s) 2471, 2760
BveI ACCTGC 2 cut(s) 563, 1499
Cac8I GCNNGC 7 cut(s) 1506, 2146, 2150, 2273, 2421, 2773, 3787
CaiI CAGNNNCTG 2 cut(s) 464, 3227
CciI TCATGA 1 cut(s) 3370
CfoI GCGC 6 cut(s) 47, 1903, 3203, 3358, 3442, 3703
Cfr10I RCCGGY 3 cut(s) 50, 62, 545
Cfr13I GGNCC 9 cut(s) 278, 335, 425, 476, 845, 2035, 2611, 2856, 4129
CseI GACGC 1 cut(s) 44
CspCI CAANNNNNGTGG 2 cut(s) 3521, 3556
DinI GGCGCC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 693
DrdI GACNNNNNNGTC 1 cut(s) 1348
DseDI GACNNNNNNGTC 1 cut(s) 1348
Eam1104I CTCTTC 6 cut(s) 129, 1681, 2732, 3306, 4047, 4260
EarI CTCTTC 6 cut(s) 129, 1681, 2732, 3306, 4047, 4260
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 6 cut(s) 428, 840, 1369, 1593, 1740, 2527
Eco147I AGGCCT 1 cut(s) 2233
Eco32I GATATC 2 cut(s) 1843, 2202
Eco47I GGWCC 7 cut(s) 335, 425, 476, 845, 2035, 2611, 4129
Eco57I CTGAAG 6 cut(s) 330, 2926, 3074, 3549, 3654, 4241
Eco81I CCTNAGG 1 cut(s) 2319
Eco88I CYCGRG 1 cut(s) 3971
Eco91I GGTNACC 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 3615
EcoO109I RGGNCCY 4 cut(s) 278, 2035, 2611, 2856
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 3 cut(s) 1364, 2166, 3149
EcoRII CCWGG 6 cut(s) 280, 421, 478, 553, 3179, 3852
EcoRV GATATC 2 cut(s) 1843, 2202
EcoT14I CCWWGG 6 cut(s) 428, 840, 1369, 1593, 1740, 2527
EcoT22I ATGCAT 3 cut(s) 1832, 1866, 3494
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 6 cut(s) 428, 840, 1369, 1593, 1740, 2527
FalI AAGNNNNNCTT 8 cut(s) 2407, 2439, 3072, 3104, 3372, 3404, 3939, 3971
FaqI GGGAC 3 cut(s) 858, 2597, 2914
FauNDI CATATG 1 cut(s) 2682
FbaI TGATCA 4 cut(s) 1960, 2179, 3292, 4062
FblI GTMKAC 3 cut(s) 81, 2523, 2973
GlaI GCGC 6 cut(s) 46, 1902, 3202, 3357, 3441, 3702
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 5 cut(s) 519, 2181, 2265, 2780, 3163
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 280, 2233, 2858, 3969
HapII CCGG 9 cut(s) 41, 51, 63, 152, 174, 338, 546, 608, 3764
HgaI GACGC 1 cut(s) 44
HhaI GCGC 6 cut(s) 47, 1903, 3203, 3358, 3442, 3703
Hin1I GRCGYC 2 cut(s) 45, 78
Hin6I GCGC 6 cut(s) 45, 1901, 3201, 3356, 3440, 3701
HinP1I GCGC 6 cut(s) 45, 1901, 3201, 3356, 3440, 3701
HincII GTYRAC 5 cut(s) 6, 82, 1573, 3588, 4218
HindII GTYRAC 5 cut(s) 6, 82, 1573, 3588, 4218
HindIII AAGCTT 4 cut(s) 312, 3285, 3362, 3405
HpaI GTTAAC 1 cut(s) 3588
HpaII CCGG 9 cut(s) 41, 51, 63, 152, 174, 338, 546, 608, 3764
HphI GGTGA 7 cut(s) 65, 197, 212, 900, 3287, 3509, 3524
Hpy99I CGWCG 4 cut(s) 38, 80, 83, 86
HpyCH4IV ACGT 5 cut(s) 78, 678, 2881, 3313, 3584
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 734, 2246, 3081, 3413, 3429, 3940
HpySE526I ACGT 5 cut(s) 78, 678, 2881, 3313, 3584
Hsp92I GRCGYC 2 cut(s) 45, 78
HspAI GCGC 6 cut(s) 45, 1901, 3201, 3356, 3440, 3701
KasI GGCGCC 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 4 cut(s) 1960, 2179, 3292, 4062
KspAI GTTAAC 1 cut(s) 3588
LguI GCTCTTC 2 cut(s) 129, 4260
LmnI GCTCC 4 cut(s) 30, 604, 1411, 2246
Lsp1109I GCAGC 9 cut(s) 235, 416, 1648, 2632, 3211, 3233, 3685, 3776, 4118
MaeII ACGT 5 cut(s) 78, 678, 2881, 3313, 3584
MfeI CAATTG 4 cut(s) 2009, 2208, 2595, 4164
MflI RGATCY 5 cut(s) 103, 703, 730, 1622, 2548
MhlI GDGCHC 6 cut(s) 885, 1408, 1553, 2447, 3530, 4177
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 9 cut(s) 938, 1025, 1781, 2381, 2771, 3662, 3830, 4186, 4315
MmeI TCCRAC 2 cut(s) 1906, 2770
Mph1103I ATGCAT 3 cut(s) 1832, 1866, 3494
MroI TCCGGA 1 cut(s) 151
MroXI GAANNNNTTC 3 cut(s) 1588, 2061, 3628
MslI CAYNNNNRTG 5 cut(s) 98, 791, 1614, 2119, 2358
MspA1I CMGCKG 4 cut(s) 266, 1661, 3224, 3789
MspCI CTTAAG 1 cut(s) 2222
MspI CCGG 9 cut(s) 41, 51, 63, 152, 174, 338, 546, 608, 3764
MspR9I CCNGG 9 cut(s) 42, 282, 339, 423, 480, 555, 608, 3181, 3854
MunI CAATTG 4 cut(s) 2009, 2208, 2595, 4164
Mva1269I GAATGC 2 cut(s) 1989, 2920
MvaI CCWGG 6 cut(s) 282, 423, 480, 555, 3181, 3854
MvnI CGCG 1 cut(s) 3201
MwoI GCNNNNNNNGC 7 cut(s) 44, 734, 2246, 3081, 3413, 3429, 3940
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 3 cut(s) 42, 339, 608
NcoI CCATGG 4 cut(s) 428, 1369, 1740, 2527
NdeI CATATG 1 cut(s) 2682
NheI GCTAGC 2 cut(s) 2144, 2419
NmuCI GTSAC 3 cut(s) 962, 3497, 3822
NsiI ATGCAT 3 cut(s) 1832, 1866, 3494
NspI RCATGY 3 cut(s) 97, 917, 1351
PaeR7I CTCGAG 1 cut(s) 3971
PagI TCATGA 1 cut(s) 3370
PceI AGGCCT 1 cut(s) 2233
PciI ACATGT 3 cut(s) 93, 913, 1347
PciSI GCTCTTC 2 cut(s) 129, 4260
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 2549, 2878
PctI GAATGC 2 cut(s) 1989, 2920
PdmI GAANNNNTTC 3 cut(s) 1588, 2061, 3628
PflMI CCANNNNNTGG 1 cut(s) 2072
PleI GAGTC 9 cut(s) 937, 1024, 1780, 2380, 2770, 3661, 3829, 4186, 4315
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 9 cut(s) 937, 1024, 1780, 2380, 2770, 3661, 3829, 4186, 4315
PpuMI RGGWCCY 2 cut(s) 2035, 2611
PscI ACATGT 3 cut(s) 93, 913, 1347
PshAI GACNNNNGTC 1 cut(s) 3867
PshBI ATTAAT 1 cut(s) 1392
Psp5II RGGWCCY 2 cut(s) 2035, 2611
Psp6I CCWGG 6 cut(s) 280, 421, 478, 553, 3179, 3852
PspEI GGTNACC 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 6 cut(s) 280, 421, 478, 553, 3179, 3852
PspPI GGNCC 9 cut(s) 278, 335, 425, 476, 845, 2035, 2611, 2856, 4129
PspPPI RGGWCCY 2 cut(s) 2035, 2611
PspXI VCTCGAGB 1 cut(s) 3971
PstI CTGCAG 4 cut(s) 574, 720, 1810, 2755
PstNI CAGNNNCTG 2 cut(s) 464, 3227
PsuI RGATCY 5 cut(s) 103, 703, 730, 1622, 2548
PvuII CAGCTG 4 cut(s) 266, 1661, 3224, 3789
RseI CAYNNNNRTG 5 cut(s) 98, 791, 1614, 2119, 2358
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 2 cut(s) 129, 4260
Sau96I GGNCC 9 cut(s) 278, 335, 425, 476, 845, 2035, 2611, 2856, 4129
SbfI CCTGCAGG 2 cut(s) 574, 720
SchI GAGTC 9 cut(s) 938, 1025, 1781, 2381, 2771, 3662, 3830, 4186, 4315
ScrFI CCNGG 9 cut(s) 42, 282, 339, 423, 480, 555, 608, 3181, 3854
SdaI CCTGCAGG 2 cut(s) 574, 720
SduI GDGCHC 6 cut(s) 885, 1408, 1553, 2447, 3530, 4177
SfcI CTRYAG 8 cut(s) 570, 716, 978, 1806, 2751, 3481, 3648, 3744
SfoI GGCGCC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 3971
SgrAI CRCCGGYG 1 cut(s) 50
SgrDI CGTCGACG 1 cut(s) 80
SinI GGWCC 7 cut(s) 335, 425, 476, 845, 2035, 2611, 4129
SlaI CTCGAG 1 cut(s) 3971
SmiMI CAYNNNNRTG 5 cut(s) 98, 791, 1614, 2119, 2358
SmlI CTYRAG 8 cut(s) 1129, 2017, 2222, 2844, 3704, 3827, 3971, 4343
SmoI CTYRAG 8 cut(s) 1129, 2017, 2222, 2844, 3704, 3827, 3971, 4343
Sse8387I CCTGCAGG 2 cut(s) 574, 720
SseBI AGGCCT 1 cut(s) 2233
SsiI CCGC 6 cut(s) 11, 48, 2461, 3073, 3423, 4080
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 3 cut(s) 758, 1390, 3256
StuI AGGCCT 1 cut(s) 2233
StyD4I CCNGG 9 cut(s) 40, 280, 337, 421, 478, 553, 606, 3179, 3852
StyI CCWWGG 6 cut(s) 428, 840, 1369, 1593, 1740, 2527
TaiI ACGT 5 cut(s) 81, 681, 2884, 3316, 3587
TaqII GACCGA 1 cut(s) 1306
TatI WGTACW 4 cut(s) 866, 1049, 3975, 4117
TauI GCSGC 5 cut(s) 50, 2464, 3075, 3426, 4082
TseFI GTSAC 3 cut(s) 962, 3497, 3822
TseI GCWGC 9 cut(s) 223, 404, 1661, 2620, 3221, 3224, 3698, 3789, 4106
Tsp45I GTSAC 3 cut(s) 962, 3497, 3822
TspGWI ACGGA 1 cut(s) 2541
Van91I CCANNNNNTGG 1 cut(s) 2072
Vha464I CTTAAG 1 cut(s) 2222
VneI GTGCAC 1 cut(s) 1549
VpaK11BI GGWCC 7 cut(s) 335, 425, 476, 845, 2035, 2611, 4129
VspI ATTAAT 1 cut(s) 1392
XagI CCTNNNNNAGG 1 cut(s) 3615
XapI RAATTY 7 cut(s) 56, 1225, 1364, 2166, 3000, 3125, 3149
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 3 cut(s) 97, 917, 1351
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XhoI CTCGAG 1 cut(s) 3971
XmiI GTMKAC 3 cut(s) 81, 2523, 2973
XmnI GAANNNNTTC 3 cut(s) 1588, 2061, 3628
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 3 cut(s) 1832, 1866, 3494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.