Rh5CG063200

SNF2 family N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004421
Physical Location & Seq
Forward (+)
4759150 .. 4769334
10185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG063200.1

Sequence Viewer

Length: 3762 bp
ATGTTCTCTGACTACAAAGATAGCAAACCAACAGCATACACTGGCTCTCCTGGTCCATGGCATCCTCCATATATCTCAGAAGCATCAGATTCTGTGGCAGGGGGTCCAGGTGGTTCCTTTGAGTGTGGAGGGAACCCTGCAATGTCTATTGACAGGAAACCACCAGCACAGACCAGCTCTCATGGGCAAATGTTCCCTACAAGTCTTAAAGACTGGTTTTCGTTGGTTCCGTGCACGGAGACTTACTTCACTGAGAGGGTTGACGTTTCACAGCCCACTAGTAGCACCACTTCTAGTTTTGAAGAAGGACATACTAATCATGTTTTAGACCACGGAGATCTTAATGTCCTGCAGGGGAAAGCAGATGTGGCGGGGAAAGTTGATTCTGAATATTCTTCACAAAACCTTGGTATTGATAACATGGACATGAATTCCAGACCATATGGTGCTTTGGGGGAAAACACCCCAGAAACCTTGGGACCATCGGAAAATAATTCTTGTACATCTATGGAAATACCCTTTCTAGATATAGATATATGTTCACCACATGTTACTTCTACCGAATCTACTCTCTGTCAAAATTCTGATCTTTTCAGTGACCATTATACAGCTGCGGATGGTAGGAGCTTAGACAATAGATATTTGGCAGAGTCCTCAATCCAGCATAGTCCTTATAGCTACTACTCTACATTATTTCCAAGTAACAAAGAAATGGTGACGAATGTGAAGGATGAATCACTGGAGTTTCACGCTGATAGTTCATGCTCAAGCAGTAAGATGAATATCAATTGTCAGGAGGGAATAACCGGTACATATGGCTTTGATTCGCCAATGATTGATGCTTCAGATATCAAGGAGTGGAATTTTGATTATGGAAGATATAATTGTATTTCGGCTGTTAGTGGGAATTCTTCATTGGATGCTGACTCTTGTCCTGTTGACAACAAGGCTTCAGTCAAGCCTTTGGGTTCTACTGAGACATACATGTCAAGCAAACGGGAATTCACTGGTGTGAAGGATGAAAATATTGATGAGTTGGTTGCTCCTAGTACTGATACGTTTCATTCTTTTTCATTCATGGATGACAGTAGAAAGCCATCTTACAATGCTGATGGTAGCTCTTTTGACAAGGAACCAAAGCTCTCAGGTTATGATGTATCTACTCAGCCTTTTGGAAATTCAGGGCATGCTAAAGAAGAGATGATTGTTGATACTAAGAGAACTTATTATTCTGAAGGTAATATAAATGGAAGTTCTTTACCCCATGTTGGTGGTGGATATGTGAATCTAAATGGTTTGGAACATCAGTTGCCAGCTGCTCAGCCATTCTCTTCAAACAGGAATCAGGGTTATAGTACGGACAGACTTGAGGGTAAACACTGTCTGCCTAAGAGCATGGGTTTTCCTTCTTCAAAAGTCAGCCCCGAGTCTATTCATAGTAACTTCTCTGAAAAATCCCCTGCAGAAGATGACTTTGATGTATGCATTATTGAAGATAAGAGTGATCCTGCACCCACACGTCGCCTTCCAGTGGTTAGCAATACTCGTTACCTGGAGCCCTTGAATCGCTCTCTAGCAGTTGGAAGTAACATCGTTAATTCACAACAATCTAGTGATCACGACACAGGAGTGGGAGGCATACCATTCAGGACAAGGGAGGAGCAATTGATCTTGAGAGTAGCATTGCAGGATCTTTCACAGCCCAAGTCAGAAGCTCTTCCACCAGATGGAGTTTTAACAGTACCTCTCTTACGACATCAGAGAATCGCATTGTCATGGATGGTTCAGAAGGAGACAGCTAGCTTGCCTTGTTGCGGAGGAATACTTGCAGATGATCAGGGATTGGGAAAAACGATATCGACAATTGCACTCATACTTAAGGAAAGGCCTCCTGCTTCTGGAGCCTGTCTAGATGAAAAAAAGTGCAAGCTAGAAACTCTGGATTTGGACCAGGATGATGACATGCTTCCTGAGGTTAGCAGAAGGAAGCAAGATGCTGATGCTCATTCAAGTGTCTCAAATGAAACTTCTGAGAAGAGCATGACATCTTTGATACAAACAAAGGGAAGGCCAGCTTGTGGAACACTCGTTGTTTGTCCCACCAGTGTCTTGCGGCAATGGGCAGAGGAGTTGCGTAATAAAATAACAGAAAAAGCTAAACTCTCAGTGCTAGTCTACCATGGAGGCAATCGAACGAGGGATCCGTGTGAGCTAGCTAAGTATGATGTGGTCCTCACAACATATTCAATTGTCAGCATGGAGGTCCCAAAGCAGCCTCTTGCTGATGGAGAAGATGAGGAGAAAGGAAAGCGAGAGGAGTATGATTCTCCACATATGGGGTTTTCATCTAAGAAAAGGAAATATCCTAATAAATGCTCAAAGGGTAAGAAGGGATTGGAGACTGCAGCGCTTGAGTCTCTTGCTCGCCCTCTTGCTAAGGTTGGATGGTTTAGGGTTGTCTTGGATGAAGCCCAGAGTATTAAGAATCACAGAACTCAAGTAGCTAGGGCCTGTTGGGGGCTTCGAGCGAAACGTAGGTGGTGCTTATCGGGGACACCTATCCAGAATGCGATTGATGATCTTTATAGCTACTTCAGATTTCTGAGATATGACCCTTATGCGGTGTACAAGTCGTTTTGTGCAAAAATAAAATTTCCAATTAGTAAGAATCCAACAAAAGGGTACAGAATGCTACAAGCTGTTCTGAAGACAATTATGTTACGCCGCACAAAAGGCACTCTTCTTGATGGAGAACCTATTATTAATTTACCGCCAAAATTTATAGAACTGAAAAGGGTGGAATTCTCCGCGGAAGAACGAGATTTTTACTCAAGGCTAGAGAGTGATTCACGCGCTCAATTTGAAGAATATGCAGCTGCTGGAACTGTGAAACAAAATTATGTTAATATTTTATTGATGCTCTTGCGACTTCGACAAGCTTGTGATCACCCTCTTCTTGTCAGACGTTATGAATCACAGTCTTTATGGAAATCTTCGGTTGAGAAGGCAAAGAAGCTTACTCATGACAAACAAGTATCCCTTCTGAATTGTTTGGAAGCTTCTTTGGCAATATGCGGTATCTGCAATGATGCACCTGAAGATGCCGTTGTTTCTGAATGTGGTCATGTCTTCTGTAGCCAATGCATTTTTGACTATCTCACTGGTGATGACAACCAGTGCCCCAACACAAGTTGCAAAGTTCGACTGAATGTGTCTTCTGTCTTTTCAAAAGCCACTTTAAACAGTTCGCTTTCTGACCAACCTAGTCAAGGGGGCATGGGTTCTGAAGTTTTTGATGCTGTAGAGTCTTTCTATGAGGATAGCTCGTACAATTCATCCAAGATTAAGGCTGCACTTGAGGTTCTCTGCTTGATGTGTAAACCAAAGACTTGCACTACAGAAAATAGTTGCTTACCAGAAAGCGTTGATAAAAATGCCAGCTGTTCTACAACGTCTTTTGACATTGATGGGGCTGAGTCCCTTGAGGACAGTTCTGATGGACAGAACTTGGGTGTGGACAAAAGTCCTAAGAAAATTGAGAAGGTAGTTCGAGAAAAAGCAATAGTCTTTTCACAGTGGACTAGGATGCTGGACTTGCTTGAAGCGTGTCTTAAAACTTCCGGCCTTGAGTACAGAAGACTTGATGGAACAATGTCAGTTGTTGCCAGAGATAAAGCTGTAAAGGATTTTAACACTCTTCCTGAGGTTCGTGGAAATTTTAGGATGTGTCCATATATTTCCAGTTTCTATATTAGGAATTGA

Protein Analysis

1253

Amino Acids

138.49

Weight (kDa)

5.43

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 586 - 984 3.5e-65 SNF2-related domain
zf-C3HC4_3 PF13920 1024 - 1062 4.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 1025 - 1061 8.1e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 1025 - 1061 1.3e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 985
AccB7I CCANNNNNTGG 2 cut(s) 1727, 2078
AccI GTMKAC 1 cut(s) 2175
AccII CGCG 2 cut(s) 2810, 2853
AclWI GGATC 4 cut(s) 1499, 1698, 2195, 2208
AcuI CTGAAG 7 cut(s) 828, 936, 1254, 2578, 2726, 3117, 3306
AfaI GTAC 9 cut(s) 502, 811, 1051, 1357, 1743, 2627, 2684, 3329, 3632
AfeI AGCGCT 1 cut(s) 2409
AflII CTTAAG 1 cut(s) 1877
AflIII ACRYGT 3 cut(s) 547, 984, 1517
AgeI ACCGGT 1 cut(s) 806
AhlI ACTAGT 1 cut(s) 278
AjiI CACGTC 1 cut(s) 1520
AjnI CCWGG 4 cut(s) 49, 106, 1551, 1950
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AleI CACNNNNGTG 2 cut(s) 1010, 1628
AloI GAACNNNNNNTCC 2 cut(s) 2185, 2217
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 6 cut(s) 233, 971, 1787, 2020, 2393, 2421
Alw44I GTGCAC 1 cut(s) 232
AlwI GGATC 4 cut(s) 1499, 1698, 2195, 2208
AlwNI CAGNNNCTG 2 cut(s) 92, 2879
Ama87I CYCGRG 1 cut(s) 1424
Aor51HI AGCGCT 1 cut(s) 2409
AoxI GGCC 4 cut(s) 1886, 2069, 2508, 3622
ApaLI GTGCAC 1 cut(s) 232
ApeKI GCWGC 7 cut(s) 611, 1316, 2272, 2405, 2873, 2876, 3350
AseI ATTAAT 1 cut(s) 2763
AsiGI ACCGGT 1 cut(s) 806
Asp700I GAANNNNTTC 1 cut(s) 1716
AspLEI GCGC 2 cut(s) 2410, 2855
AspS9I GGNCC 7 cut(s) 53, 104, 479, 1948, 2230, 2263, 2508
AsuHPI GGTGA 4 cut(s) 534, 727, 2939, 3176
AsuNHI GCTAGC 2 cut(s) 1799, 2212
AvaI CYCGRG 1 cut(s) 1424
AvaII GGWCC 6 cut(s) 53, 104, 479, 1948, 2230, 2263
AxyI CCTNAGG 2 cut(s) 1971, 3702
BaeGI GKGCMC 2 cut(s) 236, 3182
BamHI GGATCC 1 cut(s) 2200
BanII GRGCYC 1 cut(s) 1560
BarI GAAGNNNNNNTAC 2 cut(s) 274, 306
BbsI GAAGAC 4 cut(s) 2714, 3121, 3207, 3643
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 7 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337
BceAI ACGGC 1 cut(s) 3089
BciT130I CCWGG 4 cut(s) 51, 108, 1553, 1952
BciVI GTATCC 1 cut(s) 3046
BclI TGATCA 3 cut(s) 1615, 1834, 2944
BcoDI GTCTC 6 cut(s) 233, 971, 1787, 2020, 2393, 2421
BcuI ACTAGT 1 cut(s) 278
BfmI CTRYAG 6 cut(s) 350, 1461, 2403, 3133, 3300, 3396
BfoI RGCGCY 1 cut(s) 2411
BfrI CTTAAG 1 cut(s) 1877
BfuI GTATCC 1 cut(s) 3046
BglII AGATCT 1 cut(s) 337
BisI GCNGC 9 cut(s) 612, 1317, 2114, 2273, 2406, 2725, 2874, 2877, 3351
BlpI GCTNAGC 1 cut(s) 1320
BlsI GCNGC 9 cut(s) 613, 1318, 2115, 2274, 2407, 2726, 2875, 2878, 3352
BmcAI AGTACT 1 cut(s) 1051
Bme1390I CCNGG 4 cut(s) 51, 108, 1553, 1952
Bme18I GGWCC 6 cut(s) 53, 104, 479, 1948, 2230, 2263
BmeT110I CYCGRG 1 cut(s) 1424
BmgBI CACGTC 1 cut(s) 1520
BmgT120I GGNCC 7 cut(s) 53, 104, 479, 1948, 2230, 2263, 2508
BmrFI CCNGG 4 cut(s) 51, 108, 1553, 1952
BmtI GCTAGC 2 cut(s) 1803, 2216
BoxI GACNNNNGTC 2 cut(s) 930, 3522
BpiI GAAGAC 4 cut(s) 2714, 3121, 3207, 3643
BplI GAGNNNNNCTC 2 cut(s) 3308, 3340
BpmI CTGGAG 3 cut(s) 761, 1574, 1920
Bpu10I CCTNAGC 1 cut(s) 2436
Bpu1102I GCTNAGC 1 cut(s) 1320
BpuEI CTTGAG 9 cut(s) 751, 1388, 1693, 2432, 2481, 2815, 3377, 3503, 3647
BsaBI GATNNNNATC 1 cut(s) 782
BsaJI CCNNGG 6 cut(s) 56, 331, 406, 474, 2179, 2808
BsaWI WCCGGW 1 cut(s) 806
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse118I RCCGGY 1 cut(s) 806
Bse1I ACTGG 9 cut(s) 46, 218, 744, 1012, 1529, 2103, 3166, 3175, 3741
Bse21I CCTNAGG 2 cut(s) 1971, 3702
Bse3DI GCAATG 4 cut(s) 147, 1682, 2123, 3091
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 4 cut(s) 51, 108, 1553, 1952
BseDI CCNNGG 6 cut(s) 56, 331, 406, 474, 2179, 2808
BseJI GATNNNNATC 1 cut(s) 782
BseMI GCAATG 4 cut(s) 147, 1682, 2123, 3091
BseNI ACTGG 9 cut(s) 46, 218, 744, 1012, 1529, 2103, 3166, 3175, 3741
BseRI GAGGAG 4 cut(s) 1673, 2141, 2312, 2330
BseSI GKGCMC 2 cut(s) 236, 3182
BseXI GCAGC 7 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337
BsgI GTGCAG 2 cut(s) 1494, 3336
Bsh1236I CGCG 2 cut(s) 2810, 2853
BshFI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BshTI ACCGGT 1 cut(s) 806
BsiHKAI GWGCWC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 1424
BsiSI CCGG 2 cut(s) 807, 3621
BslFI GGGAC 5 cut(s) 492, 2082, 2249, 2566, 3463
BsmAI GTCTC 6 cut(s) 233, 971, 1787, 2020, 2393, 2421
BsmFI GGGAC 5 cut(s) 492, 2082, 2249, 2566, 3463
BsmI GAATGC 2 cut(s) 2572, 2694
BsnI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BsoBI CYCGRG 1 cut(s) 1424
Bsp1286I GDGCHC 3 cut(s) 236, 1560, 3182
Bsp1407I TGTACA 2 cut(s) 500, 2625
Bsp1720I GCTNAGC 1 cut(s) 1320
Bsp19I CCATGG 2 cut(s) 56, 2179
BspANI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BspFNI CGCG 2 cut(s) 2810, 2853
BspHI TCATGA 1 cut(s) 3022
BspMAI CTGCAG 3 cut(s) 354, 1465, 2407
BspOI GCTAGC 2 cut(s) 1803, 2216
BspPI GGATC 4 cut(s) 1499, 1698, 2195, 2208
BspQI GCTCTTC 2 cut(s) 1722, 2030
BspTI CTTAAG 1 cut(s) 1877
BsrDI GCAATG 4 cut(s) 147, 1682, 2123, 3091
BsrFI RCCGGY 1 cut(s) 806
BsrGI TGTACA 2 cut(s) 500, 2625
BsrI ACTGG 9 cut(s) 46, 218, 744, 1012, 1529, 2103, 3166, 3175, 3741
BssAI RCCGGY 1 cut(s) 806
BssECI CCNNGG 6 cut(s) 56, 331, 406, 474, 2179, 2808
BssT1I CCWWGG 4 cut(s) 56, 406, 474, 2179
Bst2UI CCWGG 4 cut(s) 51, 108, 1553, 1952
Bst4CI ACNGT 8 cut(s) 1088, 1382, 1741, 2887, 2979, 3245, 3491, 3576
Bst6I CTCTTC 7 cut(s) 1191, 1336, 1722, 2030, 2745, 2958, 3702
BstAFI CTTAAG 1 cut(s) 1877
BstAUI TGTACA 2 cut(s) 500, 2625
BstC8I GCNNGC 9 cut(s) 1188, 1314, 1801, 1805, 1928, 2073, 2214, 2425, 3439
BstDSI CCRYGG 4 cut(s) 56, 331, 2179, 2808
BstENI CCTNNNNNAGG 1 cut(s) 3267
BstFNI CGCG 2 cut(s) 2810, 2853
BstH2I RGCGCY 1 cut(s) 2411
BstHHI GCGC 2 cut(s) 2410, 2855
BstMAI GTCTC 6 cut(s) 233, 971, 1787, 2020, 2393, 2421
BstMWI GCNNNNNNNGC 6 cut(s) 368, 1901, 2733, 3065, 3081, 3595
BstNI CCWGG 4 cut(s) 51, 108, 1553, 1952
BstNSI RCATGY 4 cut(s) 551, 988, 1190, 1966
BstPAI GACNNNNGTC 2 cut(s) 930, 3522
BstSCI CCNGG 4 cut(s) 49, 106, 1551, 1950
BstSFI CTRYAG 6 cut(s) 350, 1461, 2403, 3133, 3300, 3396
BstSLI GKGCMC 2 cut(s) 236, 3182
BstUI CGCG 2 cut(s) 2810, 2853
BstV1I GCAGC 7 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337
BstV2I GAAGAC 4 cut(s) 2714, 3121, 3207, 3643
BstX2I RGATCY 3 cut(s) 337, 1690, 2200
BstXI CCANNNNNNTGG 1 cut(s) 1271
BstYI RGATCY 3 cut(s) 337, 1690, 2200
Bsu36I CCTNAGG 2 cut(s) 1971, 3702
BsuI GTATCC 1 cut(s) 3046
BsuRI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BtgI CCRYGG 4 cut(s) 56, 331, 2179, 2808
BtrI CACGTC 1 cut(s) 1520
Cac8I GCNNGC 9 cut(s) 1188, 1314, 1801, 1805, 1928, 2073, 2214, 2425, 3439
CaiI CAGNNNCTG 2 cut(s) 92, 2879
CciI TCATGA 1 cut(s) 3022
CfoI GCGC 2 cut(s) 2410, 2855
Cfr10I RCCGGY 1 cut(s) 806
Cfr13I GGNCC 7 cut(s) 53, 104, 479, 1948, 2230, 2263, 2508
Cfr42I CCGCGG 1 cut(s) 2811
Csp6I GTAC 9 cut(s) 501, 810, 1050, 1356, 1742, 2626, 2683, 3328, 3631
CspAI ACCGGT 1 cut(s) 806
CviQI GTAC 9 cut(s) 501, 810, 1050, 1356, 1742, 2626, 2683, 3328, 3631
DraI TTTAAA 1 cut(s) 3240
DrdI GACNNNNNNGTC 1 cut(s) 985
DseDI GACNNNNNNGTC 1 cut(s) 985
Eam1104I CTCTTC 7 cut(s) 1191, 1336, 1722, 2030, 2745, 2958, 3702
EarI CTCTTC 7 cut(s) 1191, 1336, 1722, 2030, 2745, 2958, 3702
Eco130I CCWWGG 4 cut(s) 56, 406, 474, 2179
Eco147I AGGCCT 1 cut(s) 1888
Eco24I GRGCYC 1 cut(s) 1560
Eco32I GATATC 2 cut(s) 850, 1857
Eco47I GGWCC 6 cut(s) 53, 104, 479, 1948, 2230, 2263
Eco47III AGCGCT 1 cut(s) 2409
Eco57I CTGAAG 7 cut(s) 828, 936, 1254, 2578, 2726, 3117, 3306
Eco81I CCTNAGG 2 cut(s) 1971, 3702
Eco88I CYCGRG 1 cut(s) 1424
EcoNI CCTNNNNNAGG 1 cut(s) 3267
EcoO109I RGGNCCY 2 cut(s) 2263, 2508
EcoRI GAATTC 4 cut(s) 430, 907, 1001, 2801
EcoRII CCWGG 4 cut(s) 49, 106, 1551, 1950
EcoRV GATATC 2 cut(s) 850, 1857
EcoT14I CCWWGG 4 cut(s) 56, 406, 474, 2179
EcoT22I ATGCAT 2 cut(s) 1487, 3146
EcoT38I GRGCYC 1 cut(s) 1560
ErhI CCWWGG 4 cut(s) 56, 406, 474, 2179
FalI AAGNNNNNCTT 8 cut(s) 2059, 2091, 2724, 2756, 3024, 3056, 3594, 3626
FaqI GGGAC 5 cut(s) 492, 2082, 2249, 2566, 3463
FauI CCCGC 1 cut(s) 364
FauNDI CATATG 3 cut(s) 442, 814, 2334
FbaI TGATCA 3 cut(s) 1615, 1834, 2944
FblI GTMKAC 1 cut(s) 2175
Fnu4HI GCNGC 9 cut(s) 612, 1317, 2114, 2273, 2406, 2725, 2874, 2877, 3351
FriOI GRGCYC 1 cut(s) 1560
Fsp4HI GCNGC 9 cut(s) 612, 1317, 2114, 2273, 2406, 2725, 2874, 2877, 3351
GlaI GCGC 2 cut(s) 2409, 2854
GluI GCNGC 9 cut(s) 612, 1317, 2114, 2273, 2406, 2725, 2874, 2877, 3351
GsuI CTGGAG 3 cut(s) 761, 1574, 1920
HaeII RGCGCY 1 cut(s) 2411
HaeIII GGCC 4 cut(s) 1888, 2071, 2510, 3624
HapII CCGG 2 cut(s) 807, 3621
HhaI GCGC 2 cut(s) 2410, 2855
Hin6I GCGC 2 cut(s) 2408, 2853
HinP1I GCGC 2 cut(s) 2408, 2853
HincII GTYRAC 2 cut(s) 262, 940
HindII GTYRAC 2 cut(s) 262, 940
HindIII AAGCTT 3 cut(s) 2937, 3014, 3057
HpaII CCGG 2 cut(s) 807, 3621
HphI GGTGA 4 cut(s) 534, 727, 2939, 3176
Hpy99I CGWCG 1 cut(s) 1524
HpyCH4III ACNGT 8 cut(s) 1088, 1382, 1741, 2887, 2979, 3245, 3491, 3576
HpyCH4IV ACGT 6 cut(s) 264, 1058, 1519, 2533, 2965, 3452
HpyF10VI GCNNNNNNNGC 6 cut(s) 368, 1901, 2733, 3065, 3081, 3595
HpySE526I ACGT 6 cut(s) 264, 1058, 1519, 2533, 2965, 3452
HspAI GCGC 2 cut(s) 2408, 2853
Ksp22I TGATCA 3 cut(s) 1615, 1834, 2944
KspI CCGCGG 1 cut(s) 2811
LguI GCTCTTC 2 cut(s) 1722, 2030
LmnI GCTCC 5 cut(s) 624, 1048, 1555, 1660, 1901
Lsp1109I GCAGC 7 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337
MaeII ACGT 6 cut(s) 264, 1058, 1519, 2533, 2965, 3452
MaeIII GTNAC 8 cut(s) 550, 596, 701, 715, 1439, 1547, 1586, 2718
MfeI CAATTG 4 cut(s) 787, 1664, 1863, 2247
MflI RGATCY 3 cut(s) 337, 1690, 2200
MhlI GDGCHC 3 cut(s) 236, 1560, 3182
MlyI GAGTC 6 cut(s) 659, 920, 1436, 2423, 3314, 3485
MmeI TCCRAC 3 cut(s) 1561, 2422, 2696
Mph1103I ATGCAT 2 cut(s) 1487, 3146
MroXI GAANNNNTTC 1 cut(s) 1716
MslI CAYNNNNRTG 6 cut(s) 425, 1010, 1269, 1628, 1774, 2010
MspA1I CMGCKG 5 cut(s) 611, 1316, 2810, 2876, 3441
MspCI CTTAAG 1 cut(s) 1877
MspI CCGG 2 cut(s) 807, 3621
MspR9I CCNGG 4 cut(s) 51, 108, 1553, 1952
MunI CAATTG 4 cut(s) 787, 1664, 1863, 2247
Mva1269I GAATGC 2 cut(s) 2572, 2694
MvaI CCWGG 4 cut(s) 51, 108, 1553, 1952
MvnI CGCG 2 cut(s) 2810, 2853
MwoI GCNNNNNNNGC 6 cut(s) 368, 1901, 2733, 3065, 3081, 3595
NcoI CCATGG 2 cut(s) 56, 2179
NdeI CATATG 3 cut(s) 442, 814, 2334
NheI GCTAGC 2 cut(s) 1799, 2212
NmuCI GTSAC 2 cut(s) 596, 715
NsiI ATGCAT 2 cut(s) 1487, 3146
NspI RCATGY 4 cut(s) 551, 988, 1190, 1966
OliI CACNNNNGTG 2 cut(s) 1010, 1628
PaeI GCATGC 1 cut(s) 1190
PagI TCATGA 1 cut(s) 3022
PceI AGGCCT 1 cut(s) 1888
PciI ACATGT 2 cut(s) 547, 984
PciSI GCTCTTC 2 cut(s) 1722, 2030
PcsI WCGNNNNNNNCGW 3 cut(s) 227, 2201, 2530
PctI GAATGC 2 cut(s) 2572, 2694
PdmI GAANNNNTTC 1 cut(s) 1716
PflMI CCANNNNNTGG 2 cut(s) 1727, 2078
PinAI ACCGGT 1 cut(s) 806
PkrI GCNGC 9 cut(s) 613, 1318, 2115, 2274, 2407, 2726, 2875, 2878, 3352
PleI GAGTC 6 cut(s) 658, 920, 1435, 2422, 3313, 3484
PpsI GAGTC 6 cut(s) 658, 920, 1435, 2422, 3313, 3484
PpuMI RGGWCCY 1 cut(s) 2263
PscI ACATGT 2 cut(s) 547, 984
PshAI GACNNNNGTC 2 cut(s) 930, 3522
PshBI ATTAAT 1 cut(s) 2763
Psp5II RGGWCCY 1 cut(s) 2263
Psp6I CCWGG 4 cut(s) 49, 106, 1551, 1950
PspGI CCWGG 4 cut(s) 49, 106, 1551, 1950
PspPI GGNCC 7 cut(s) 53, 104, 479, 1948, 2230, 2263, 2508
PspPPI RGGWCCY 1 cut(s) 2263
PstI CTGCAG 3 cut(s) 354, 1465, 2407
PstNI CAGNNNCTG 2 cut(s) 92, 2879
PsuI RGATCY 3 cut(s) 337, 1690, 2200
PvuII CAGCTG 4 cut(s) 611, 1316, 2876, 3441
RsaI GTAC 9 cut(s) 502, 811, 1051, 1357, 1743, 2627, 2684, 3329, 3632
RsaNI GTAC 9 cut(s) 501, 810, 1050, 1356, 1742, 2626, 2683, 3328, 3631
RseI CAYNNNNRTG 6 cut(s) 425, 1010, 1269, 1628, 1774, 2010
SacII CCGCGG 1 cut(s) 2811
SapI GCTCTTC 2 cut(s) 1722, 2030
SatI GCNGC 9 cut(s) 612, 1317, 2114, 2273, 2406, 2725, 2874, 2877, 3351
Sau96I GGNCC 7 cut(s) 53, 104, 479, 1948, 2230, 2263, 2508
SbfI CCTGCAGG 1 cut(s) 354
ScaI AGTACT 1 cut(s) 1051
SchI GAGTC 6 cut(s) 659, 920, 1436, 2423, 3314, 3485
ScrFI CCNGG 4 cut(s) 51, 108, 1553, 1952
SdaI CCTGCAGG 1 cut(s) 354
SduI GDGCHC 3 cut(s) 236, 1560, 3182
SfcI CTRYAG 6 cut(s) 350, 1461, 2403, 3133, 3300, 3396
Sfr303I CCGCGG 1 cut(s) 2811
SgrBI CCGCGG 1 cut(s) 2811
SinI GGWCC 6 cut(s) 53, 104, 479, 1948, 2230, 2263
SmiMI CAYNNNNRTG 6 cut(s) 425, 1010, 1269, 1628, 1774, 2010
SpeI ACTAGT 1 cut(s) 278
SphI GCATGC 1 cut(s) 1190
Sse8387I CCTGCAGG 1 cut(s) 354
SseBI AGGCCT 1 cut(s) 1888
SspI AATATT 3 cut(s) 392, 1027, 2908
StuI AGGCCT 1 cut(s) 1888
StyD4I CCNGG 4 cut(s) 49, 106, 1551, 1950
StyI CCWWGG 4 cut(s) 56, 406, 474, 2179
TaaI ACNGT 8 cut(s) 1088, 1382, 1741, 2887, 2979, 3245, 3491, 3576
TaiI ACGT 6 cut(s) 267, 1061, 1522, 2536, 2968, 3455
TaqI TCGA 6 cut(s) 1859, 2191, 2524, 2932, 3202, 3550
TatI WGTACW 4 cut(s) 500, 1049, 2625, 3630
TauI GCSGC 2 cut(s) 2116, 2727
TseFI GTSAC 2 cut(s) 596, 715
TseI GCWGC 7 cut(s) 611, 1316, 2272, 2405, 2873, 2876, 3350
Tsp45I GTSAC 2 cut(s) 596, 715
TspGWI ACGGA 5 cut(s) 219, 251, 348, 1373, 2193
Van91I CCANNNNNTGG 2 cut(s) 1727, 2078
Vha464I CTTAAG 1 cut(s) 1877
VneI GTGCAC 1 cut(s) 232
VpaK11BI GGWCC 6 cut(s) 53, 104, 479, 1948, 2230, 2263
VspI ATTAAT 1 cut(s) 2763
XagI CCTNNNNNAGG 1 cut(s) 3267
XbaI TCTAGA 2 cut(s) 523, 1909
XceI RCATGY 4 cut(s) 551, 988, 1190, 1966
XcmI CCANNNNNNNNNTGG 1 cut(s) 1271
XmiI GTMKAC 1 cut(s) 2175
XmnI GAANNNNTTC 1 cut(s) 1716
ZrmI AGTACT 1 cut(s) 1051
Zsp2I ATGCAT 2 cut(s) 1487, 3146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.