Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004421

Physical Location & Seq

Genomic Coordinates Forward (+)

58616445 .. 58619352

Gene Structure 2908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0428000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATGGAGAGAGATTTCATGGGTTTGAGCTCGAAAGAGTCGGTGGTTGTGATCAAGGAGGAGAATAATGACGATGCTGGCAGAGACTCTGGTGGGTTGACCAGAGGTGCTGGTTCGAATTGGCCCTTCTCAAACAAGGTCTCTGCAATTCCCCATCATTTGATGTCTTTCAAAGGTGCTCAAGAAGGTAAGACTCAAAAGATGGTACCTGAGTCCTTCTTGTCTTCCGGATTTATGCCCGTCTCAACTTCAGACGCATTTGATCCTTGTCAGAAACGACCTACATGTGATGCACAGAAGTACTTCAATCACGATAGGCAAGGTGGCACTCACTTTACCCTGACAGCTTATCCTATGCAACATGATGTGCACTCTGTACACCGTCCTTATGACGTGAAGATGATTTCAGTTTCCAATCAAGGTATTTCTGTTCCTATGGGCAATCCATACATGAAGAATCATTTTGCACCTATGGGTCAGAATTTTGCTGTTACTACCACCAAGCAACAATTATTTGGAGGAATTCCTGGTACTACTCCATATTCAATTCCTCCAAGTTCAGGGTCCATTGTTGGAACCACTGAACCATGGAACAACGTCAAGACATCTGGGTCTCCTTCTCAGATGACAATCTTCTATGCTGGTAGTGTGAATGTCTATCATGATATCTCCCCTGAGAAGGCTCAGGCTATGATGATTTTAGCTCAGAATGGTTCTTCCATCCCTTCTAATGGTGCACACTCAAAAGCTGAAGCACCAAGAGCAAAGTTGGCCTCAGAAGATGGTGTTCCAGTGAATCAGACTATAAATACACCACCTTCTGCTTTTCCTAGTCCCTTATCTGTTTCTTCACATACTGGTACCCAATCAGTAAGTGGGTCCACAAGCACTGATGAACTGATGGCAGGTAAAACCACAGGGCTTCCAACGACTCCTGTTAGTAAAGTGGAGCCTCCAAAAACAGCAAATGCAGTTAAATCTGTTGCTGCAACGTCTATGATTCATTCTGCTATTCCACAAGCTCGCAAAGCATCCTTGGCTCGATTTTTAGGGAAACGCAAGGAAAGGGTAATAAATTCAGCACCATACAACTTGAGCAAGAAATCTGCAGAAGGCAGCAACCCAGAATCTAATGGAATGAATAAAGGAGAACAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2

Protein Analysis

386

Amino Acids

41.15

Weight (kDa)

9.22

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	205 - 235	5.7e-14	tify domain
Jas_motif	PF09425	339 - 363	1.5e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11100 AT1G11100 AT1G11100 AT1G11100 AT1G11100 AT1G61140 AT1G61140 AT1G61140
fragaria_vesca	FvH4_3g04580 FvH4_3g04580 FvH4_3g04580 FvH4_3g04580 FvH4_3g04580
malus_domestica	MD05G1322200.v1.1 MD10G1300200.v1.1
prunus_persica	Prupe.4G040600_v2.0.a1 Prupe.4G040600_v2.0.a1
pyrus_communis	pycom05g29650 pycom10g25290
rosa_chinensis	RchiOBHm_Chr5g0007521
rosa_laevigata	RLG00000031464
rosa_multiflora	Rmu_co8522595.1_g000001 Rmu_ssc0000182.1_g000011
rosa_roxburghii	Rroxscaffold_1G00068890
rosa_rugosa	Rorug04G0427800 Rorug04G0427900 Rorug04G0428000
rosa_samantha	Rh5AG055800 Rh5BG053400 Rh5CG063200 Rh5DG052400
rosa_wichuraiana	Rw5G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	896
Acc65I	GGTACC	2 cut(s)	205, 860
AccB1I	GGYRCC	2 cut(s)	205, 860
AccIII	TCCGGA	1 cut(s)	227
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	3 cut(s)	481, 522, 1075
AcuI	CTGAAG	2 cut(s)	234, 771
AfaI	GTAC	5 cut(s)	207, 302, 378, 532, 862
AfiI	CCNNNNNNNGG	3 cut(s)	560, 679, 731
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	172, 307, 546
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	5 cut(s)	30, 347, 704, 749, 1022
AluI	AGCT	5 cut(s)	30, 347, 704, 749, 1022
Alw21I	GWGCWC	4 cut(s)	32, 181, 372, 739
Alw26I	GTCTC	4 cut(s)	78, 145, 247, 618
Alw44I	GTGCAC	2 cut(s)	368, 735
AlwI	GGATC	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	2 cut(s)	122, 771
ApaLI	GTGCAC	2 cut(s)	368, 735
ApeKI	GCWGC	2 cut(s)	986, 1116
ApoI	RAATTY	3 cut(s)	481, 522, 1075
Asp700I	GAANNNNTTC	1 cut(s)	302
Asp718I	GGTACC	2 cut(s)	205, 860
AspS9I	GGNCC	3 cut(s)	123, 564, 879
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	564, 879
BaeGI	GKGCMC	2 cut(s)	372, 739
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	2 cut(s)	205, 860
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	4 cut(s)	32, 181, 372, 739
BbvI	GCAGC	2 cut(s)	973, 1128
BccI	CCATC	5 cut(s)	162, 196, 728, 776, 895
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	4 cut(s)	78, 145, 247, 618
BfaI	CTAG	1 cut(s)	831
BfmI	CTRYAG	1 cut(s)	1107
BfuAI	ACCTGC	1 cut(s)	896
BisI	GCNGC	2 cut(s)	987, 1117
BlsI	GCNGC	2 cut(s)	988, 1118
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	2 cut(s)	564, 879
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	123, 564, 879
BmiI	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	3 cut(s)	64, 280, 1040
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	684
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	2 cut(s)	165, 1114
BsaBI	GATNNNNATC	1 cut(s)	629
BsaI	GGTCTC	2 cut(s)	145, 618
BsaJI	CCNNGG	2 cut(s)	587, 1035
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 679, 731
Bse1I	ACTGG	2 cut(s)	791, 862
Bse8I	GATNNNNATC	1 cut(s)	629
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	587, 1035
BseGI	GGATG	2 cut(s)	720, 1031
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	3 cut(s)	560, 679, 731
BseMII	CTCAG	6 cut(s)	201, 635, 666, 698, 719, 789
BseNI	ACTGG	2 cut(s)	791, 862
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	2 cut(s)	372, 739
BseXI	GCAGC	2 cut(s)	973, 1128
BshFI	GGCC	2 cut(s)	124, 773
BshNI	GGYRCC	2 cut(s)	205, 860
BsiHKAI	GWGCWC	4 cut(s)	32, 181, 372, 739
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	3 cut(s)	560, 679, 731
BsmAI	GTCTC	4 cut(s)	78, 145, 247, 618
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	124, 773
Bso31I	GGTCTC	2 cut(s)	145, 618
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	4 cut(s)	32, 181, 372, 739
Bsp13I	TCCGGA	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	51, 262
Bsp19I	CCATGG	1 cut(s)	587
BspANI	GGCC	2 cut(s)	124, 773
BspCNI	CTCAG	6 cut(s)	202, 634, 667, 697, 718, 788
BspEI	TCCGGA	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
BspMAI	CTGCAG	1 cut(s)	1111
BspMI	ACCTGC	1 cut(s)	896
BspPI	GGATC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	205, 860
BspTNI	GGTCTC	2 cut(s)	145, 618
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	791, 862
BssECI	CCNNGG	2 cut(s)	587, 1035
BssMI	GATC	2 cut(s)	51, 262
BssT1I	CCWWGG	2 cut(s)	587, 1035
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	79, 1024
BstDEI	CTNAG	6 cut(s)	210, 621, 675, 684, 705, 775
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	720, 1031
BstKTI	GATC	2 cut(s)	54, 265
BstMAI	GTCTC	4 cut(s)	78, 145, 247, 618
BstMBI	GATC	2 cut(s)	51, 262
BstMWI	GCNNNNNNNGC	4 cut(s)	761, 770, 1028, 1037
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	1107
BstSLI	GKGCMC	2 cut(s)	372, 739
BstV1I	GCAGC	2 cut(s)	973, 1128
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	124, 773
BtgI	CCRYGG	1 cut(s)	587
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	720, 1031
BtsIMutI	CAGTG	3 cut(s)	579, 798, 888
BveI	ACCTGC	1 cut(s)	896
Cac8I	GCNNGC	2 cut(s)	79, 1024
CciI	TCATGA	1 cut(s)	661
Cfr13I	GGNCC	3 cut(s)	123, 564, 879
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	5 cut(s)	206, 301, 377, 531, 861
CviAII	CATG	6 cut(s)	19, 285, 362, 451, 588, 662
CviQI	GTAC	5 cut(s)	206, 301, 377, 531, 861
DdeI	CTNAG	6 cut(s)	210, 621, 675, 684, 705, 775
DpnI	GATC	2 cut(s)	53, 264
DpnII	GATC	2 cut(s)	51, 262
DrdI	GACNNNNNNGTC	1 cut(s)	610
DseDI	GACNNNNNNGTC	1 cut(s)	610
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	587, 1035
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	145, 618
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	2 cut(s)	564, 879
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	234, 771
EcoICRI	GAGCTC	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	587, 1035
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	2 cut(s)	587, 1035
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	6 cut(s)	22, 288, 365, 454, 591, 665
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	6 cut(s)	18, 284, 361, 450, 587, 661
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	987, 1117
FokI	GGATG	2 cut(s)	707, 1018
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	987, 1117
FspBI	CTAG	1 cut(s)	831
GluI	GCNGC	2 cut(s)	987, 1117
HaeIII	GGCC	2 cut(s)	124, 773
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	6 cut(s)	22, 288, 365, 454, 591, 665
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	9 cut(s)	38, 86, 193, 212, 457, 796, 931, 1000, 1127
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	5 cut(s)	99, 370, 379, 737, 882
Hpy188I	TCNGA	7 cut(s)	253, 273, 480, 624, 708, 778, 801
Hpy188III	TCNNGA	5 cut(s)	182, 228, 311, 601, 662
Hpy8I	GTNNAC	5 cut(s)	99, 370, 379, 737, 882
HpyAV	CCTTC	8 cut(s)	136, 179, 226, 627, 673, 735, 828, 1106
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	3 cut(s)	393, 597, 992
HpyCH4V	TGCA	9 cut(s)	146, 293, 358, 370, 467, 737, 971, 989, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	761, 770, 1028, 1037
HpyF3I	CTNAG	6 cut(s)	210, 621, 675, 684, 705, 775
HpySE526I	ACGT	3 cut(s)	393, 597, 992
Hsp92II	CATG	6 cut(s)	22, 288, 365, 454, 591, 665
Kpn2I	TCCGGA	1 cut(s)	227
KpnI	GGTACC	2 cut(s)	209, 864
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	51, 262
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	973, 1128
LweI	GCATC	3 cut(s)	64, 280, 1040
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	3 cut(s)	393, 597, 992
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	53, 264
MboI	GATC	2 cut(s)	51, 262
MboII	GAAGA	7 cut(s)	216, 409, 466, 625, 708, 791, 840
MhlI	GDGCHC	4 cut(s)	32, 181, 372, 739
MluCI	AATT	7 cut(s)	118, 147, 481, 509, 522, 546, 1075
MlyI	GAGTC	5 cut(s)	47, 80, 187, 221, 925
MmeI	TCCRAC	2 cut(s)	553, 950
MnlI	CCTC	6 cut(s)	52, 98, 512, 561, 784, 963
MroI	TCCGGA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	1 cut(s)	975
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	761, 770, 1028, 1037
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	2 cut(s)	51, 262
NlaIII	CATG	6 cut(s)	22, 288, 365, 454, 591, 665
NlaIV	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
NspI	RCATGY	1 cut(s)	288
NspV	TTCGAA	1 cut(s)	116
PagI	TCATGA	1 cut(s)	661
PciI	ACATGT	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	457, 796, 1000, 1127
PkrI	GCNGC	2 cut(s)	988, 1118
PleI	GAGTC	5 cut(s)	46, 80, 187, 220, 925
PpsI	GAGTC	5 cut(s)	46, 80, 187, 220, 925
PscI	ACATGT	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
PspPI	GGNCC	3 cut(s)	123, 564, 879
PstI	CTGCAG	1 cut(s)	1111
RsaI	GTAC	5 cut(s)	207, 302, 378, 532, 862
RsaNI	GTAC	5 cut(s)	206, 301, 377, 531, 861
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	975
SatI	GCNGC	2 cut(s)	987, 1117
Sau3AI	GATC	2 cut(s)	51, 262
Sau96I	GGNCC	3 cut(s)	123, 564, 879
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	5 cut(s)	47, 80, 187, 221, 925
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	4 cut(s)	32, 181, 372, 739
SfaNI	GCATC	3 cut(s)	64, 280, 1040
SfcI	CTRYAG	1 cut(s)	1107
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	2 cut(s)	564, 879
SmlI	CTYRAG	2 cut(s)	180, 1093
SmoI	CTYRAG	2 cut(s)	180, 1093
Sse9I	AATT	7 cut(s)	118, 147, 481, 509, 522, 546, 1075
SspMI	CTAG	1 cut(s)	831
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	587, 1035
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	3 cut(s)	396, 600, 995
TaqI	TCGA	3 cut(s)	32, 116, 1042
TasI	AATT	7 cut(s)	118, 147, 481, 509, 522, 546, 1075
TatI	WGTACW	2 cut(s)	300, 376
TfiI	GAWTC	4 cut(s)	457, 796, 1000, 1127
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	3 cut(s)	586, 798, 895
TseI	GCWGC	2 cut(s)	986, 1116
TspDTI	ATGAA	5 cut(s)	7, 467, 909, 992, 1154
TspRI	CASTG	3 cut(s)	586, 798, 895
VneI	GTGCAC	2 cut(s)	368, 735
VpaK11BI	GGWCC	2 cut(s)	564, 879
XapI	RAATTY	3 cut(s)	481, 522, 1075
XceI	RCATGY	1 cut(s)	288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	1 cut(s)	831
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.