Rroxscaffold_1G00068890

SNF2 family N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004421
Physical Location & Seq
Reverse (-)
89961240 .. 89971254
10015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068890.1

Sequence Viewer

Length: 4020 bp
ATGTTCTCTGACTACAAAGATAGCAAACCAACAGCATACACTGGCTCTCCTGGTCCATGGCATCCTCCATATATCTCAGAAGCATCAGATTCTGTGGCAGGGGGTCCAGGTGGTTCCTTTGTGTGTGGAGGGAACCCTGCAATGTCTGTTGACAGGAAACCACCAGCACAGACCAGCTCTCATGGGCACGTGTTCTCTACAAGTCTTAAAGACTGGATTTCGTTGGTTCCGTGCACGGAGACTTACTTCGCTGAGAGGGTTGACGTTTCACAGCCCACCAGTAGCACCACTTCTAGTTTTGAAGAAGGACATACCAATCATGTTTTAGACCACGGAGATCTTAATGTCCTGCAGGGGAAAGCAGATGTGGCAGGGAAAGTTGATTCTGAATATTCTTCACAAAACCTTGGTATTGATAACATGGACATGAATTCCAGACCAGATGGTGCTTTGGGGGAAAACACCCCAGAAACCTTGGGACCATCGGAAAATAATTCTTGTACATCTATGGAAATACCCTTTCTTGATGTAGATATATGTTCACCACATGTTACTTCTACCGAATCTACTCTCTGTCAAAATTCTGATCTTTTCAGTGACCATTATACAGCTGCAGATGGTATGAGCTTAGACAATAGATATTTGGCAGAGTCCTCAATCCAGCATAGTCCTTATAGCTACTACTCTACATTATTTCCAAGTAACAAAGAAATGATGACTAATGTGAAGGATGAATCACTTGAGTTTCAAACTGATAGTTCATGCTCAAGCAGTAAGATGAATATCAATTGTCAGGAGGGAATAACCGGTACATATGGCTTTGATTCGCCAATGATTGATGCTTCAGATATCAAGGAGTGGATTTTTGATTATGGAAGATATAATTGTATTTCGGCTGTTAGTGGGATTTCTTCATTGGATGCTGACTCTTGTCCTGTTGACAACAAGGCTTCAGTCAAGCCTTTGGGTTCTACTGAGACATACATGTCAAGCAAACGGGAATTCACTGGTGTGAAGGATGAAAATATTGATGAGTTGGTTGCTCCTAGTACTGATACGTTTCATTCTTTTTCATTCATGGATGACAGTAGAAAGCCATCTTACAATGCTGATGGTAGCTCTTTTGACAAGGAACCAAAGCTCTCAGGTTATGATGTATCTACTCAGCCTTTTGGAAATTCAGGGCATGCTAAAGAAGAGATGATTGTTGATACTAAGAGAACTTATTATTCTGAAGGTAATATAAATGGAAGTTCTTTACCCCATGTTGGTGGTGGATACGTGAATCTAAATGGTTTGGAACATCAGTTGCCAGCTGCTCAGCCATTCTCTTCAAACAGGAATCAGGGTTATAGTACGGACAGACTTGAGGCTAAACACTGTCTGCCTAAGAGCATGGGTTTTCCTTCTTCAAAAGTCAGCCCCGAGTCTATTCATAGTAACTTCTCTGAAAAATCCCCTGCAGAAGATGACTATGATGTATGCATTATTGAAGATAAGAGTGATCCTGCACCCACACGTCGCCTTTCAGTGGTTAGCAATACTTGTTACCCGGCGCCCTTGAATCGCTCTCTAGCAGTTGGAAGTAACATTGTTAATTCACAACAATCTAGTGATCACGACACAGGAGTGGGAGGCATACGAGTCAGGACAAGGGAGGAGCAATTGATCTTGAGAGTAGCATTGCAGGACCTTTCACAGCCCAAGTCAGAAGCTCTTCCACCAGATGGAGTTTTAACAGTACCTCTCTTACGACATCAGAGAATCGCATTGTCATGGATGGTTCAGAAGGAGACGGCTAGCTTGCATTGTTGCGGAGGAATACTTGCAGATGATCAGGGATTGGGAAAAACGATATCGACAATTGCACTCATACTTAAGGAAAGGCCTCCTGCTTCTGGAGCCTGTCTAGATGAAAAAAAGTGCAAGCTGGAAACTCTGGATTTGGACCAGGATGATGACATGCTTCCTGAGGTTAGCAGAAGGAAGCAAGATGCTGATGCTCATTCAAGTGTCTCAAATGAAACTTCCGAGAAGAGCATGAAATCTTTGATACAAACAAAGGGAAGGCCAGCTTGTGGAACACTCGTTGTTTGTCCCACCAGTGTCTTGCGGCAATGGGCAGAGGAGTTGCGTAATAAAATAACAGAAAAAGCTAAACTCTCAGTGCTAGTCTACCATGGAGGCAATCGAACGAGGGATCCGTGTGAGCTAGCCAAGTATGATGTTGTCCTCACAACATATTCAATTGTCAGCATGGAGGTCCCAAAGCAGCCTCTTGCTGATGGAGAAGATGAGGAGAAAGGAAAGCGAGAGGAGTATGATTCTCCACATATGGGGTTTTCATCTAAGAAAAGGAAATATCCTAATAAATGCTCAAAGGGTAAGAAGGGATTGGAGACTGCAGCGCTTGAGTCTCTTGCTCGCCCTCTTGCCAAGGTTGGATGGTTTAGGGTTGTCTTGGATGAAGCCCAGAGTATTAAGAATCACAGAACTCAAGTAGCTAGGGCCTGTTGGGGGCTTCGAGCGAAACGTAGGTGGTGCTTATCGGGGACACCTATCCAGAATGCGATTGATGATCTTTATAGCTACTTCAGATTTCTGAGATATGACCCTTATGCGGTGTACAAGTCGTTTTGTGCAAAAATAAAATTTCCAATTAGTAAGAATCCAACAAAAGGGTACAGAATGCTACAAGCTGTTCTGAAGACAATTATGTTACGCCGCACAAAAGGCACTCTTCTTGATGGAGAACCTATTATTAATTTACCACCAAAATTTATAGAACTGAAAAGGGTGGAATTCTCCGCGGAAGAACGAGATTTTTACTCAAGGCTAGAGAGTGATTCACGCGCTCAATTTGAAGAATATGCAGCTGCTGGAACTGTGAAACAAAATTATGTTAATATTTTATTGATGCTCTTGCGACTTCGACAAGCTTGTGATCACCCTCTTCTTGTCAGACGTTATGAATCACAGTCTTTATGGAAATCTTCGGTTGAGCAGGCAAAGAAGCTTACTCATGACAAACAAGTATCCCTTCTGAATTGTTTGGAAGCTTCTTTGGCAATATGCGGTATCTGCAATGATGCACCTGAAGATGCCGTTGTTTCTGAATGTGGTCATGTCTTCTGTAGCCAATGCATTTGTGACTATCTCACTGGTGATGACAACCAGTGCCCCAACACAAGTTGCAAAGTTCGACTGAATGTGTCTTCCGTCTTTTCAAAAGCCACTTTAAACAGTTCGCTTTCTGACCAACCTAGTCAAGGTGGCATGGGTTCTGAAGTTTTTGATGCTGTAGAGTCTTTCTATGAGGATAGCTCGTACAATTCATCCAAGATTAAGGCTGCACTTGAGGTTCTCTGCTTGATGTGTAAACCAAAGACTTGCACTACAGAAAATAGTTGCTTACTGGAAAGCGTTGAGAAAAATGCCAGCTGTTCTACAACGTCTTTTGACATTGATGGGGCTGAGTCCCTTGAGGACAGTTCTGATGGACAGAACTTGGGTGTGGACAAAAGTCCTAAGAAAATTGAGAAGGTAGTTCGAGAAAAAGCAATAGTGTTTTCACAGTGGACTAGGATGCTGGACTTGCTTGAAGCATGTCTTAAAACTTCCGGCCTTGAGTACAGAAGACTTGATGGAACGATGTCAGTTGTTGCCAGAGATAAAGCTGTAAAGGATTTTAACACTCTTCCTGAGGTGTCAGTTATGATTATGTCTTTGAAAGCTGCTAGTCTTGGTCTGAACATGGTTGCAGCCTGCCATGTACTTCTTTTGGACCTGTGGTGGAATCCTACGACTGAAGATCAAGCAATTGATAGAGCACATCGTATTGGGCAGACTCGTCCTGTTACAGTTTTACGGTTGACTGTGAGAGATACGGTCGAAGATCGTATTTTAGCTCTTCAGAAAAAGAAGAGAGAGATGGTGGCATCTGCATTTGGAGAGGATGAGACTGGTGGTCGTCAGACTCGCTTAACAGTTGATGATCTCAAGTACCTGTTTATGAAGTGA

Protein Analysis

1339

Amino Acids

147.81

Weight (kDa)

5.49

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 586 - 984 3e-65 SNF2-related domain
zf-C3HC4_2 PF13923 1025 - 1061 1.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 1025 - 1061 3.6e-07 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 1181 - 1281 8.5e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 985
AccB1I GGYRCC 1 cut(s) 1555
AccB7I CCANNNNNTGG 2 cut(s) 1727, 2078
AccI GTMKAC 1 cut(s) 2175
AccII CGCG 2 cut(s) 2810, 2853
AciI CCGC 7 cut(s) 1815, 2113, 2621, 2725, 2808, 2810, 3075
AclWI GGATC 3 cut(s) 1499, 2195, 2208
AcsI RAATTY 7 cut(s) 430, 580, 1001, 1177, 2651, 2777, 2801
AcuI CTGAAG 9 cut(s) 828, 936, 1254, 2578, 2726, 3117, 3306, 3828, 3896
AcvI CACGTG 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 1556
AfeI AGCGCT 1 cut(s) 2409
AflII CTTAAG 1 cut(s) 1877
AflIII ACRYGT 4 cut(s) 189, 547, 984, 1517
AgeI ACCGGT 1 cut(s) 806
AhdI GACNNNNNGTC 1 cut(s) 3966
AjiI CACGTC 1 cut(s) 1520
AjnI CCWGG 3 cut(s) 49, 106, 1950
AleI CACNNNNGTG 2 cut(s) 1010, 1628
AloI GAACNNNNNNTCC 2 cut(s) 2185, 2217
Alw21I GWGCWC 2 cut(s) 236, 3832
Alw26I GTCTC 7 cut(s) 233, 971, 1787, 2020, 2393, 2421, 3953
Alw44I GTGCAC 1 cut(s) 232
AlwI GGATC 3 cut(s) 1499, 2195, 2208
AlwNI CAGNNNCTG 2 cut(s) 92, 2879
Ama87I CYCGRG 1 cut(s) 1424
Aor51HI AGCGCT 1 cut(s) 2409
AoxI GGCC 4 cut(s) 1886, 2069, 2508, 3622
ApaLI GTGCAC 1 cut(s) 232
ApeKI GCWGC 9 cut(s) 611, 1316, 2272, 2405, 2873, 2876, 3350, 3734, 3761
ApoI RAATTY 7 cut(s) 430, 580, 1001, 1177, 2651, 2777, 2801
AseI ATTAAT 1 cut(s) 2763
AsiGI ACCGGT 1 cut(s) 806
Asp700I GAANNNNTTC 1 cut(s) 1716
AspLEI GCGC 3 cut(s) 1558, 2410, 2855
AspS9I GGNCC 8 cut(s) 53, 104, 479, 1690, 1948, 2263, 2508, 3784
AsuC2I CCSGG 1 cut(s) 1553
AsuHPI GGTGA 3 cut(s) 534, 2939, 3176
AsuNHI GCTAGC 2 cut(s) 1799, 2212
AvaI CYCGRG 1 cut(s) 1424
AvaII GGWCC 7 cut(s) 53, 104, 479, 1690, 1948, 2263, 3784
AxyI CCTNAGG 2 cut(s) 1971, 3702
BaeGI GKGCMC 3 cut(s) 189, 236, 3182
BamHI GGATCC 1 cut(s) 2200
BanI GGYRCC 1 cut(s) 1555
BarI GAAGNNNNNNTAC 2 cut(s) 274, 306
BbrPI CACGTG 1 cut(s) 190
BbsI GAAGAC 4 cut(s) 2714, 3121, 3207, 3643
Bbv12I GWGCWC 2 cut(s) 236, 3832
BbvI GCAGC 9 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337, 3721, 3773
BceAI ACGGC 2 cut(s) 1812, 3089
BciT130I CCWGG 3 cut(s) 51, 108, 1952
BciVI GTATCC 2 cut(s) 1271, 3046
BclI TGATCA 3 cut(s) 1615, 1834, 2944
BcnI CCSGG 1 cut(s) 1553
BcoDI GTCTC 7 cut(s) 233, 971, 1787, 2020, 2393, 2421, 3953
BfmI CTRYAG 7 cut(s) 350, 612, 1461, 2403, 3133, 3300, 3396
BfoI RGCGCY 2 cut(s) 1559, 2411
BfrI CTTAAG 1 cut(s) 1877
BfuI GTATCC 2 cut(s) 1271, 3046
BglII AGATCT 1 cut(s) 337
BlpI GCTNAGC 1 cut(s) 1320
BmcAI AGTACT 1 cut(s) 1051
Bme1390I CCNGG 4 cut(s) 51, 108, 1553, 1952
Bme18I GGWCC 7 cut(s) 53, 104, 479, 1690, 1948, 2263, 3784
BmeRI GACNNNNNGTC 1 cut(s) 3966
BmeT110I CYCGRG 1 cut(s) 1424
BmgBI CACGTC 1 cut(s) 1520
BmgT120I GGNCC 8 cut(s) 53, 104, 479, 1690, 1948, 2263, 2508, 3784
BmrFI CCNGG 4 cut(s) 51, 108, 1553, 1952
BmtI GCTAGC 2 cut(s) 1803, 2216
BoxI GACNNNNGTC 2 cut(s) 930, 3522
BpiI GAAGAC 4 cut(s) 2714, 3121, 3207, 3643
BplI GAGNNNNNCTC 2 cut(s) 3308, 3340
BpmI CTGGAG 1 cut(s) 1920
Bpu1102I GCTNAGC 1 cut(s) 1320
BpuMI CCSGG 1 cut(s) 1553
BsaAI YACGTR 2 cut(s) 190, 1282
BsaBI GATNNNNATC 1 cut(s) 782
BsaHI GRCGYC 1 cut(s) 1556
BsaJI CCNNGG 7 cut(s) 56, 331, 406, 474, 2179, 2436, 2808
BsaWI WCCGGW 1 cut(s) 806
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse118I RCCGGY 1 cut(s) 806
Bse1I ACTGG 9 cut(s) 46, 218, 279, 1012, 2103, 3166, 3175, 3420, 3967
Bse21I CCTNAGG 2 cut(s) 1971, 3702
Bse3DI GCAATG 4 cut(s) 147, 1682, 2123, 3091
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 3 cut(s) 51, 108, 1952
BseDI CCNNGG 7 cut(s) 56, 331, 406, 474, 2179, 2436, 2808
BseJI GATNNNNATC 1 cut(s) 782
BseMI GCAATG 4 cut(s) 147, 1682, 2123, 3091
BseNI ACTGG 9 cut(s) 46, 218, 279, 1012, 2103, 3166, 3175, 3420, 3967
BseRI GAGGAG 4 cut(s) 1673, 2141, 2312, 2330
BseSI GKGCMC 3 cut(s) 189, 236, 3182
BseXI GCAGC 9 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337, 3721, 3773
BsgI GTGCAG 2 cut(s) 1494, 3336
Bsh1236I CGCG 2 cut(s) 2810, 2853
Bsh1285I CGRYCG 1 cut(s) 3891
BshFI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BshNI GGYRCC 1 cut(s) 1555
BshTI ACCGGT 1 cut(s) 806
BsiEI CGRYCG 1 cut(s) 3891
BsiHKAI GWGCWC 2 cut(s) 236, 3832
BsiHKCI CYCGRG 1 cut(s) 1424
BsiSI CCGG 3 cut(s) 807, 1553, 3621
BslFI GGGAC 5 cut(s) 492, 2082, 2249, 2566, 3463
BsmAI GTCTC 7 cut(s) 233, 971, 1787, 2020, 2393, 2421, 3953
BsmBI CGTCTC 1 cut(s) 1787
BsmFI GGGAC 5 cut(s) 492, 2082, 2249, 2566, 3463
BsmI GAATGC 2 cut(s) 2572, 2694
BsnI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BsoBI CYCGRG 1 cut(s) 1424
Bsp1286I GDGCHC 4 cut(s) 189, 236, 3182, 3832
Bsp1407I TGTACA 2 cut(s) 500, 2625
Bsp1720I GCTNAGC 1 cut(s) 1320
Bsp19I CCATGG 2 cut(s) 56, 2179
BspACI CCGC 7 cut(s) 1815, 2113, 2621, 2725, 2808, 2810, 3075
BspANI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BspFNI CGCG 2 cut(s) 2810, 2853
BspHI TCATGA 1 cut(s) 3022
BspMAI CTGCAG 4 cut(s) 354, 616, 1465, 2407
BspOI GCTAGC 2 cut(s) 1803, 2216
BspPI GGATC 3 cut(s) 1499, 2195, 2208
BspQI GCTCTTC 3 cut(s) 1722, 2030, 3915
BspT107I GGYRCC 1 cut(s) 1555
BspTI CTTAAG 1 cut(s) 1877
BsrDI GCAATG 4 cut(s) 147, 1682, 2123, 3091
BsrFI RCCGGY 1 cut(s) 806
BsrGI TGTACA 2 cut(s) 500, 2625
BsrI ACTGG 9 cut(s) 46, 218, 279, 1012, 2103, 3166, 3175, 3420, 3967
BssAI RCCGGY 1 cut(s) 806
BssECI CCNNGG 7 cut(s) 56, 331, 406, 474, 2179, 2436, 2808
BssNI GRCGYC 1 cut(s) 1556
BssT1I CCWWGG 5 cut(s) 56, 406, 474, 2179, 2436
Bst2UI CCWGG 3 cut(s) 51, 108, 1952
Bst6I CTCTTC 9 cut(s) 1191, 1336, 1722, 2030, 2745, 2958, 3702, 3915, 3917
BstACI GRCGYC 1 cut(s) 1556
BstAFI CTTAAG 1 cut(s) 1877
BstAUI TGTACA 2 cut(s) 500, 2625
BstBAI YACGTR 2 cut(s) 190, 1282
BstDSI CCRYGG 4 cut(s) 56, 331, 2179, 2808
BstENI CCTNNNNNAGG 1 cut(s) 3267
BstFNI CGCG 2 cut(s) 2810, 2853
BstH2I RGCGCY 2 cut(s) 1559, 2411
BstHHI GCGC 3 cut(s) 1558, 2410, 2855
BstMAI GTCTC 7 cut(s) 233, 971, 1787, 2020, 2393, 2421, 3953
BstMCI CGRYCG 1 cut(s) 3891
BstMWI GCNNNNNNNGC 6 cut(s) 368, 1901, 2733, 3065, 3081, 3595
BstNI CCWGG 3 cut(s) 51, 108, 1952
BstNSI RCATGY 5 cut(s) 551, 988, 1190, 1966, 3609
BstPAI GACNNNNGTC 2 cut(s) 930, 3522
BstSCI CCNGG 4 cut(s) 49, 106, 1551, 1950
BstSFI CTRYAG 7 cut(s) 350, 612, 1461, 2403, 3133, 3300, 3396
BstSLI GKGCMC 3 cut(s) 189, 236, 3182
BstUI CGCG 2 cut(s) 2810, 2853
BstV1I GCAGC 9 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337, 3721, 3773
BstV2I GAAGAC 4 cut(s) 2714, 3121, 3207, 3643
BstX2I RGATCY 2 cut(s) 337, 2200
BstXI CCANNNNNNTGG 1 cut(s) 1271
BstYI RGATCY 2 cut(s) 337, 2200
Bsu36I CCTNAGG 2 cut(s) 1971, 3702
BsuI GTATCC 2 cut(s) 1271, 3046
BsuRI GGCC 4 cut(s) 1888, 2071, 2510, 3624
BtgI CCRYGG 4 cut(s) 56, 331, 2179, 2808
BtrI CACGTC 1 cut(s) 1520
CaiI CAGNNNCTG 2 cut(s) 92, 2879
CciI TCATGA 1 cut(s) 3022
CfoI GCGC 3 cut(s) 1558, 2410, 2855
Cfr10I RCCGGY 1 cut(s) 806
Cfr13I GGNCC 8 cut(s) 53, 104, 479, 1690, 1948, 2263, 2508, 3784
Cfr42I CCGCGG 1 cut(s) 2811
CspAI ACCGGT 1 cut(s) 806
DinI GGCGCC 1 cut(s) 1557
DraI TTTAAA 1 cut(s) 3240
DrdI GACNNNNNNGTC 1 cut(s) 985
DriI GACNNNNNGTC 1 cut(s) 3966
DseDI GACNNNNNNGTC 1 cut(s) 985
Eam1104I CTCTTC 9 cut(s) 1191, 1336, 1722, 2030, 2745, 2958, 3702, 3915, 3917
Eam1105I GACNNNNNGTC 1 cut(s) 3966
EarI CTCTTC 9 cut(s) 1191, 1336, 1722, 2030, 2745, 2958, 3702, 3915, 3917
Eco130I CCWWGG 5 cut(s) 56, 406, 474, 2179, 2436
Eco147I AGGCCT 1 cut(s) 1888
Eco32I GATATC 2 cut(s) 850, 1857
Eco47I GGWCC 7 cut(s) 53, 104, 479, 1690, 1948, 2263, 3784
Eco47III AGCGCT 1 cut(s) 2409
Eco57I CTGAAG 9 cut(s) 828, 936, 1254, 2578, 2726, 3117, 3306, 3828, 3896
Eco72I CACGTG 1 cut(s) 190
Eco81I CCTNAGG 2 cut(s) 1971, 3702
Eco88I CYCGRG 1 cut(s) 1424
EcoNI CCTNNNNNAGG 1 cut(s) 3267
EcoO109I RGGNCCY 3 cut(s) 1690, 2263, 2508
EcoRI GAATTC 3 cut(s) 430, 1001, 2801
EcoRII CCWGG 3 cut(s) 49, 106, 1950
EcoRV GATATC 2 cut(s) 850, 1857
EcoT14I CCWWGG 5 cut(s) 56, 406, 474, 2179, 2436
EcoT22I ATGCAT 2 cut(s) 1487, 3146
EgeI GGCGCC 1 cut(s) 1557
EheI GGCGCC 1 cut(s) 1557
ErhI CCWWGG 5 cut(s) 56, 406, 474, 2179, 2436
Esp3I CGTCTC 1 cut(s) 1787
FalI AAGNNNNNCTT 8 cut(s) 2059, 2091, 2724, 2756, 3024, 3056, 3594, 3626
FaqI GGGAC 5 cut(s) 492, 2082, 2249, 2566, 3463
FauNDI CATATG 2 cut(s) 814, 2334
FbaI TGATCA 3 cut(s) 1615, 1834, 2944
FblI GTMKAC 1 cut(s) 2175
GlaI GCGC 3 cut(s) 1557, 2409, 2854
GsuI CTGGAG 1 cut(s) 1920
HaeII RGCGCY 2 cut(s) 1559, 2411
HaeIII GGCC 4 cut(s) 1888, 2071, 2510, 3624
HapII CCGG 3 cut(s) 807, 1553, 3621
HhaI GCGC 3 cut(s) 1558, 2410, 2855
Hin1I GRCGYC 1 cut(s) 1556
Hin6I GCGC 3 cut(s) 1556, 2408, 2853
HinP1I GCGC 3 cut(s) 1556, 2408, 2853
HincII GTYRAC 4 cut(s) 151, 262, 940, 3873
HindII GTYRAC 4 cut(s) 151, 262, 940, 3873
HindIII AAGCTT 3 cut(s) 2937, 3014, 3057
HpaII CCGG 3 cut(s) 807, 1553, 3621
HphI GGTGA 3 cut(s) 534, 2939, 3176
Hpy99I CGWCG 1 cut(s) 1524
HpyCH4IV ACGT 8 cut(s) 189, 264, 1058, 1281, 1519, 2533, 2965, 3452
HpyF10VI GCNNNNNNNGC 6 cut(s) 368, 1901, 2733, 3065, 3081, 3595
HpySE526I ACGT 8 cut(s) 189, 264, 1058, 1281, 1519, 2533, 2965, 3452
Hsp92I GRCGYC 1 cut(s) 1556
HspAI GCGC 3 cut(s) 1556, 2408, 2853
KasI GGCGCC 1 cut(s) 1555
Ksp22I TGATCA 3 cut(s) 1615, 1834, 2944
KspI CCGCGG 1 cut(s) 2811
LguI GCTCTTC 3 cut(s) 1722, 2030, 3915
LmnI GCTCC 3 cut(s) 1048, 1660, 1901
Lsp1109I GCAGC 9 cut(s) 598, 1303, 2284, 2417, 2863, 2885, 3337, 3721, 3773
MaeII ACGT 8 cut(s) 189, 264, 1058, 1281, 1519, 2533, 2965, 3452
MaeIII GTNAC 9 cut(s) 550, 596, 701, 1439, 1547, 1586, 2718, 3149, 3856
MfeI CAATTG 5 cut(s) 787, 1664, 1863, 2247, 3819
MflI RGATCY 2 cut(s) 337, 2200
MhlI GDGCHC 4 cut(s) 189, 236, 3182, 3832
Mly113I GGCGCC 1 cut(s) 1556
MlyI GAGTC 9 cut(s) 659, 920, 1436, 1653, 2423, 3314, 3485, 3841, 3970
MmeI TCCRAC 3 cut(s) 1561, 2422, 2696
Mph1103I ATGCAT 2 cut(s) 1487, 3146
MroXI GAANNNNTTC 1 cut(s) 1716
MslI CAYNNNNRTG 6 cut(s) 425, 1010, 1269, 1628, 1774, 2010
MspA1I CMGCKG 5 cut(s) 611, 1316, 2810, 2876, 3441
MspCI CTTAAG 1 cut(s) 1877
MspI CCGG 3 cut(s) 807, 1553, 3621
MspR9I CCNGG 4 cut(s) 51, 108, 1553, 1952
MunI CAATTG 5 cut(s) 787, 1664, 1863, 2247, 3819
Mva1269I GAATGC 2 cut(s) 2572, 2694
MvaI CCWGG 3 cut(s) 51, 108, 1952
MvnI CGCG 2 cut(s) 2810, 2853
MwoI GCNNNNNNNGC 6 cut(s) 368, 1901, 2733, 3065, 3081, 3595
NarI GGCGCC 1 cut(s) 1556
NciI CCSGG 1 cut(s) 1553
NcoI CCATGG 2 cut(s) 56, 2179
NdeI CATATG 2 cut(s) 814, 2334
NheI GCTAGC 2 cut(s) 1799, 2212
NmuCI GTSAC 2 cut(s) 596, 3149
NsiI ATGCAT 2 cut(s) 1487, 3146
NspI RCATGY 5 cut(s) 551, 988, 1190, 1966, 3609
OliI CACNNNNGTG 2 cut(s) 1010, 1628
PaeI GCATGC 1 cut(s) 1190
PagI TCATGA 1 cut(s) 3022
PceI AGGCCT 1 cut(s) 1888
PciI ACATGT 2 cut(s) 547, 984
PciSI GCTCTTC 3 cut(s) 1722, 2030, 3915
PcsI WCGNNNNNNNCGW 3 cut(s) 227, 2201, 2530
PctI GAATGC 2 cut(s) 2572, 2694
PdmI GAANNNNTTC 1 cut(s) 1716
PflMI CCANNNNNTGG 2 cut(s) 1727, 2078
PinAI ACCGGT 1 cut(s) 806
PleI GAGTC 9 cut(s) 658, 920, 1435, 1652, 2422, 3313, 3484, 3841, 3970
PluTI GGCGCC 1 cut(s) 1559
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
PpsI GAGTC 9 cut(s) 658, 920, 1435, 1652, 2422, 3313, 3484, 3841, 3970
Ppu21I YACGTR 2 cut(s) 190, 1282
PpuMI RGGWCCY 2 cut(s) 1690, 2263
PscI ACATGT 2 cut(s) 547, 984
PshAI GACNNNNGTC 2 cut(s) 930, 3522
PshBI ATTAAT 1 cut(s) 2763
Psp5II RGGWCCY 2 cut(s) 1690, 2263
Psp6I CCWGG 3 cut(s) 49, 106, 1950
PspCI CACGTG 1 cut(s) 190
PspGI CCWGG 3 cut(s) 49, 106, 1950
PspPI GGNCC 8 cut(s) 53, 104, 479, 1690, 1948, 2263, 2508, 3784
PspPPI RGGWCCY 2 cut(s) 1690, 2263
PstI CTGCAG 4 cut(s) 354, 616, 1465, 2407
PstNI CAGNNNCTG 2 cut(s) 92, 2879
PsuI RGATCY 2 cut(s) 337, 2200
PvuII CAGCTG 4 cut(s) 611, 1316, 2876, 3441
RseI CAYNNNNRTG 6 cut(s) 425, 1010, 1269, 1628, 1774, 2010
SacII CCGCGG 1 cut(s) 2811
SapI GCTCTTC 3 cut(s) 1722, 2030, 3915
Sau96I GGNCC 8 cut(s) 53, 104, 479, 1690, 1948, 2263, 2508, 3784
SbfI CCTGCAGG 1 cut(s) 354
ScaI AGTACT 1 cut(s) 1051
SchI GAGTC 9 cut(s) 659, 920, 1436, 1653, 2423, 3314, 3485, 3841, 3970
ScrFI CCNGG 4 cut(s) 51, 108, 1553, 1952
SdaI CCTGCAGG 1 cut(s) 354
SduI GDGCHC 4 cut(s) 189, 236, 3182, 3832
SfcI CTRYAG 7 cut(s) 350, 612, 1461, 2403, 3133, 3300, 3396
SfoI GGCGCC 1 cut(s) 1557
Sfr303I CCGCGG 1 cut(s) 2811
SgrBI CCGCGG 1 cut(s) 2811
SinI GGWCC 7 cut(s) 53, 104, 479, 1690, 1948, 2263, 3784
SmiMI CAYNNNNRTG 6 cut(s) 425, 1010, 1269, 1628, 1774, 2010
SphI GCATGC 1 cut(s) 1190
Sse8387I CCTGCAGG 1 cut(s) 354
SseBI AGGCCT 1 cut(s) 1888
SsiI CCGC 7 cut(s) 1815, 2113, 2621, 2725, 2808, 2810, 3075
SspDI GGCGCC 1 cut(s) 1555
SspI AATATT 3 cut(s) 392, 1027, 2908
StuI AGGCCT 1 cut(s) 1888
StyD4I CCNGG 4 cut(s) 49, 106, 1551, 1950
StyI CCWWGG 5 cut(s) 56, 406, 474, 2179, 2436
TaiI ACGT 8 cut(s) 192, 267, 1061, 1284, 1522, 2536, 2968, 3455
TaqI TCGA 7 cut(s) 1859, 2191, 2524, 2932, 3202, 3550, 3891
TatI WGTACW 5 cut(s) 500, 1049, 2625, 3630, 3772
TauI GCSGC 2 cut(s) 2116, 2727
TseFI GTSAC 2 cut(s) 596, 3149
TseI GCWGC 9 cut(s) 611, 1316, 2272, 2405, 2873, 2876, 3350, 3734, 3761
Tsp45I GTSAC 2 cut(s) 596, 3149
TspGWI ACGGA 6 cut(s) 219, 251, 348, 1373, 2193, 3208
Van91I CCANNNNNTGG 2 cut(s) 1727, 2078
Vha464I CTTAAG 1 cut(s) 1877
VneI GTGCAC 1 cut(s) 232
VpaK11BI GGWCC 7 cut(s) 53, 104, 479, 1690, 1948, 2263, 3784
VspI ATTAAT 1 cut(s) 2763
XagI CCTNNNNNAGG 1 cut(s) 3267
XapI RAATTY 7 cut(s) 430, 580, 1001, 1177, 2651, 2777, 2801
XbaI TCTAGA 1 cut(s) 1909
XceI RCATGY 5 cut(s) 551, 988, 1190, 1966, 3609
XcmI CCANNNNNNNNNTGG 1 cut(s) 1271
XmiI GTMKAC 1 cut(s) 2175
XmnI GAANNNNTTC 1 cut(s) 1716
ZrmI AGTACT 1 cut(s) 1051
Zsp2I ATGCAT 2 cut(s) 1487, 3146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.