Rh5AG055800

SNF2 family N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004421
Physical Location & Seq
Forward (+)
4840139 .. 4849167
9029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG055800.1

Sequence Viewer

Length: 4344 bp
ATGTTGATGGCGGTGGAGGAGAGTTCTAATTGTGGATTCGCCGCCGAGGATTTCGACGGCGAGGACATGTCGATCGATCTCGATACATTCTATCGTCTTCTCGCGGAAGAACCCCCGAGTTGTCCGGAGGATTCATCATTGGGAAGCGGATCACAGGCTGAAGCAGTTTCCGGTGCTGATTACCGTGAGGATACACTGCTCCAAAGTGGATCGCAAGTTTTAAAAGCAGAATCATCAGCTGATTTAGGGGGTTTCGGATCATGGCATCCTCCATACAGCTCTGAAGCTTCGGATTCTGGGGCAGGGCGTCCAGGTGGTTCCTTTGATTATGCAGGGAACCCTGCAATGTTCTCTGACTACAAAGATAGCAAACCAACAGCATACACTGGCTCTCCTGGTCCATGGCATCCTCCATATATCTCAGAAGCATCAGATTCTGTGGCAGGGGGTCCAGGTGGTTCCTTTGAGTGTGGAGGGAACCCTGCAATGTCTATTGACAGGAAACCACCAGCACAGACCAGCTCTCATGGGCAAATGTTCCCTACAAGTCTTAAAGACTGGTTTTCGTTGGTTCCGTGCACGGAGACTTACTTCACTGAGAGGGTTGACGTTTCACAGCCCACTAGTAGCACCACTTCTAGTTTTGAAGAAGGACATACTAATCATGTTTTAGACCACGGAGATCTTAATGTCCTGCAGGGGAAAGCAGATGTGGCAGGGAAAGTTGATTCTGAATATTCTTCACAAAACCTTGGTATTGATAACATGGACATGAATTCCAGACCATATGGTGCTTTGGGGGAAAACACCCCAGAAACCTTGGGACCATCGGAAAATAATTCTTGTACATCTATGGAAATACCCTTTCTAGATATAGATATATGTTCACCACATGTTACTTCTACCGAATCTACTCTCTGTCAAAATTCTGATCTTTTCAGTGACCATTATACAGCTGCGGATGGTAGGAGCTTAGACAATAGATATTTGGCAGAGTCCTCAATCCAGCATAGTCCTTATAGCTACTACTCTTCATTATTTCCAAGTAACAAAGAAATGGTGACTAATGTGAAGGATGAATCACTGGAGTTTCACACTGATAGTTCATGCTCAAGCAGTAAGATGAATATCAATTGTCAGGAGGGAATAACCGGTACATATGGCTTTGATTCGCCAATGATTGATGCTTCAGATATCAAGGAGTGGAATTTTGATTATGGAAGATATAATTGTATTTCAGCTGTTAGTGGGAATTCTTCATTGGATGCTGACTCTTGTCCTGTTAACAACAAGGCTTCAGTCAAGCCTTTGGGTTCTACTGAGACATACATGTCAAGCAAACGGGAATTCACTGGTGTGAAGGATGAAAATATTGATGAGTTGGTTGCTCCTAGTACTGATACGTTTCATTCTTTTTCATTCATGGATGACAGGAGAAAGCCATCTTACAATGCTGATGGTAGCTCTTTTGACAAGGAACCAAAGCTCTCAGGTTATGATGTATCTACTCAGCCTTTTGGAAATTCAGGGCATGCTAAAGAAGAGATGATTGTTGATACTAAGAGAACTTATTATTCTGAAGGTAATATAAATGGAAGTTCTTTACCCCATGTTGGTGGTGGATATGTGAATCTAAATGGTTTGGAACATCAGTTGCCAGCTGCTCAGCCATTCTCTTCAAACAGGAATCAGGGTTATAGTACGGACAGACTTGAGGGTAAACACTGTCTGCCTAAGAGCATGGGTTTTCCTTCTTCAAAAGTCAGCCCCGAGTCTATTCATAGTAACTTCTCTGAAAAATCCCCTGCAGAAGATGACTATGATGTATGCATTATTGAAGATAAGAGTGATCCTGCACCCACACGTCGCCTTCCAGTGGTTAGCAATACTCGTTACCTGGAGCCCTTGAATCGCTCTCTAGCAGTTGGAAGTAACATCGTTAATTCACAACAATCTAGTGATCACGACACAGGAGTGGGAGGCATACCATTCAGGACAAGGGAGGAGCAATTGATCTTGAGAGTAGCATTGCAGGATCTTTCACAGCCCAAGTCAGAAGCTCTTCCACCAGATGGAGTTTTAACAGTACCTCTCTTACGACATCAGAGAATCGCATTGTCATGGATGGTTCAGAAGGAGACAGCTAGCTTGCCTTGTTGCGGAGGAATACTTGCAGATGATCAGGGATTGGGAAAAACGATATCGACAATTGCACTCATACTTAAGGAAAGGCCTCCTGCTTCTGGAGCCTGTCTAGATGAAAATAAGTGCAAGCTAGAAACTCTGGATTTGGACCAGGATGATGACATGCTTCCTGAGGTTAGCAGAAGGAAGCAAGATGCTGATGCTCATTCAAGTGTCTCAAATGAAACTTCTGAGAAGAGCATGACATCTTTGATACAAACAAAGGGAAGGCCAGCTTGTGGAACACTCGTTGTTTGTCCCACCAGTGTCTTGCGGCAATGGGCAGAGGAGTTGCGTAATAAAATAACAGAAAAAGCTAAACTCTCAGTGCTAGTCTACCATGGAGGCAATCGAACGAGGGATCCGTGTGAGCTAGCTAAGTATGATGTTGTCCTCACAACATATTCAATTGTCAGCATGGAGGTCCCAAAGCAGCCTCTTGCTGATGGAGAAGATGAGGAGAAAGGAAAGCGAGAGGAATATGATTCTCCACATATGGGGTTTTCATCTAAGAAAAGGAAATATCCTAATAAATGCTCAAAGGGTAAGAAGGGATTGGAGACTGCAGCGCTTGAGTCTCTTGCTCGCCCTCTTGCTAAGGTTGGATGGTTTAGGGTTGTCTTGGATGAAGCCCAGAGTATTAAGAATCACAGAACTCAAGTAGCTAGGGCCTGTTGGGGGCTTCGAGCGAAACGTAGGTGGTGCTTATCGGGGACACCTATCCAGAATGCAATTGATGATCTTTATAGCTACTTCAGATTTCTGAGATATGACCCTTATGCGGTGTACAAGTCGTTTTGTGCAAAAATAAAATTTCCAATTAGTAAGAATCCAACAAAAGGGTACAGAATGCTACAAGCTGTTCTGAAGACAATTATGTTACGCCGCACAAAAGGCACTCTTCTTGATGGAGAACCTATTATTAATTTACCGCCAAAATTTATAGAACTGAAAAGGGTGGAATTCTCCGCAGAAGAACGAGATTTTTACTCACGGCTAGAGAGTGATTCACGCGCTCAATTTGAAGAATATGCAGCTGCTGGAACTGTGAAACAAAATTATGTTAATATTTTATTGATGCTCTTGCGACTTCGACAAGCTTGTGATCACCCTCTTCTTGTCAGACGTTATGAATCACAGTCTTTATGGAAATCTTCGGTTGAGAAGGCAAAGAAGCTTACTCATGACAAACAAGTATCCCTTCTGAATTGTTTGGAAGCTTCTTTGGCAATATGCGGTATCTGCAATGATGCACCTGAAGATGCCGTTGTTTCTGAATGTGGTCATGTCTTCTGTAGCCAATGCATTTTTGACTATCTCACTGGTGATGACAACCAGTGCCCCAACACAAGTTGCAAAGTTCGACTGAATGTGTCTTCCGTCTTTTCAAAAGCCACTTTAAACAGTTCGCTTTCTGACCAACCTAGTCAAGGGGGCATGGGTTCTGAAGTTTTTGATGCTGTAGAGTCTTTCTATGAGGATAGCTCGTACAATTCATCCAAGATTAAGGCTGCACTTGAGGTTCTCTGCTCGATGTGTAAACCAAAGACTTGCACTACAGAAAATAGTTGCTTACCGGAAAGCGTTGATAAAAATGCCAGCTGTTCTACAACGTCTTTTGACATTGATGGGGCTGATTCCCTTGAGGACAGTTCTGATGGACAGAACTTGGGTGTGGACAAAAGTCCTAAGAAAATTGAGAAGGTAGTTCGAGAAAAAGCAATAGTCTTTTCACAATGGACTAGGATGCTGGACTTGCTTGAAGCGTGTCTTAAAACTTCCGGCCTTGAGTACAGAAGACTTGATGGAACAATGTCAGTTGTTGCCAGAGATAAAGCTGTAAAGGATTTTAACACTCTTCCTGAGGTGTCAGTTATGATTATGTCTTTGAAAGCTGCTAGTCTTGGTCTGAACATGGTTGCAGCCTGCCATGTACTTCTTTTGGACCTGTGGTGGAATCCTACGACTGAAGATCAAGCAATTGATAGAGCACATCGTATTGGGCAGACTCGTCCTGTTACGGTTTTACGGTTGACTGTGAGAGATACGGTTGAAGATCGTATTTTAGCTCTTCAGGTACTGTCCTCATGTTATTTCATTTTTTTTTTCTCGTGTTGTAGTTTAAAAAGTGTTGATCACTACCGGTATGAGATTGAATAG

Protein Analysis

1447

Amino Acids

159.31

Weight (kDa)

5.1

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 701 - 1099 5.8e-65 SNF2-related domain
zf-C3HC4_3 PF13920 1139 - 1177 5.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 1140 - 1176 9.6e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 1140 - 1176 1.5e-08 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 1296 - 1396 9.4e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1330
AccB7I CCANNNNNTGG 2 cut(s) 2072, 2423
AccI GTMKAC 1 cut(s) 2520
AccII CGCG 2 cut(s) 104, 3198
AccIII TCCGGA 1 cut(s) 124
AclWI GGATC 7 cut(s) 157, 217, 265, 1844, 2043, 2540, 2553
AcsI RAATTY 9 cut(s) 775, 925, 1207, 1252, 1346, 1522, 2996, 3122, 3146
AcyI GRCGYC 1 cut(s) 307
AfeI AGCGCT 1 cut(s) 2754
AflII CTTAAG 1 cut(s) 2222
AflIII ACRYGT 4 cut(s) 66, 892, 1329, 1862
AgeI ACCGGT 2 cut(s) 1151, 4326
AhlI ACTAGT 1 cut(s) 623
AjiI CACGTC 1 cut(s) 1865
AjnI CCWGG 5 cut(s) 310, 394, 451, 1896, 2295
AjuI GAANNNNNNNTTGG 2 cut(s) 1244, 1276
AleI CACNNNNGTG 2 cut(s) 1355, 1973
AloI GAACNNNNNNTCC 2 cut(s) 2530, 2562
Alw21I GWGCWC 2 cut(s) 581, 4177
Alw26I GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
Alw44I GTGCAC 1 cut(s) 577
AlwI GGATC 7 cut(s) 157, 217, 265, 1844, 2043, 2540, 2553
AlwNI CAGNNNCTG 3 cut(s) 437, 3224, 4264
Ama87I CYCGRG 2 cut(s) 115, 1769
Aor13HI TCCGGA 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 2754
AoxI GGCC 4 cut(s) 2231, 2414, 2853, 3967
ApaLI GTGCAC 1 cut(s) 577
ApeKI GCWGC 9 cut(s) 956, 1661, 2617, 2750, 3218, 3221, 3695, 4079, 4106
ApoI RAATTY 9 cut(s) 775, 925, 1207, 1252, 1346, 1522, 2996, 3122, 3146
AseI ATTAAT 1 cut(s) 3108
AsiGI ACCGGT 2 cut(s) 1151, 4326
Asp700I GAANNNNTTC 1 cut(s) 2061
AspLEI GCGC 2 cut(s) 2755, 3200
AspS9I GGNCC 7 cut(s) 398, 449, 824, 2293, 2608, 2853, 4129
AsuHPI GGTGA 4 cut(s) 879, 1072, 3284, 3521
AsuNHI GCTAGC 2 cut(s) 2144, 2557
AvaI CYCGRG 2 cut(s) 115, 1769
AvaII GGWCC 6 cut(s) 398, 449, 824, 2293, 2608, 4129
AxyI CCTNAGG 2 cut(s) 2316, 4047
BaeGI GKGCMC 2 cut(s) 581, 3527
BamHI GGATCC 1 cut(s) 2545
BanII GRGCYC 1 cut(s) 1905
BarI GAAGNNNNNNTAC 2 cut(s) 619, 651
BauI CACGAG 1 cut(s) 4294
BbsI GAAGAC 5 cut(s) 89, 3059, 3466, 3552, 3988
Bbv12I GWGCWC 2 cut(s) 581, 4177
BbvI GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
BceAI ACGGC 3 cut(s) 73, 3194, 3434
BciT130I CCWGG 5 cut(s) 312, 396, 453, 1898, 2297
BciVI GTATCC 2 cut(s) 184, 3391
BclI TGATCA 4 cut(s) 1960, 2179, 3289, 4318
BcoDI GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
BcuI ACTAGT 1 cut(s) 623
BfmI CTRYAG 6 cut(s) 695, 1806, 2748, 3478, 3645, 3741
BfoI RGCGCY 1 cut(s) 2756
BfrI CTTAAG 1 cut(s) 2222
BfuI GTATCC 2 cut(s) 184, 3391
BglII AGATCT 1 cut(s) 682
BlpI GCTNAGC 1 cut(s) 1665
BmcAI AGTACT 1 cut(s) 1396
Bme1390I CCNGG 5 cut(s) 312, 396, 453, 1898, 2297
Bme18I GGWCC 6 cut(s) 398, 449, 824, 2293, 2608, 4129
BmeT110I CYCGRG 2 cut(s) 115, 1769
BmgBI CACGTC 1 cut(s) 1865
BmgT120I GGNCC 7 cut(s) 398, 449, 824, 2293, 2608, 2853, 4129
BmrFI CCNGG 5 cut(s) 312, 396, 453, 1898, 2297
BmtI GCTAGC 2 cut(s) 2148, 2561
BoxI GACNNNNGTC 2 cut(s) 1275, 3867
BpiI GAAGAC 5 cut(s) 89, 3059, 3466, 3552, 3988
BplI GAGNNNNNCTC 2 cut(s) 3653, 3685
BpmI CTGGAG 3 cut(s) 1106, 1919, 2265
Bpu10I CCTNAGC 1 cut(s) 2781
Bpu1102I GCTNAGC 1 cut(s) 1665
BpuEI CTTGAG 8 cut(s) 1096, 1733, 2038, 2777, 2826, 3722, 3848, 3992
Bsa29I ATCGAT 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 1127
BsaHI GRCGYC 1 cut(s) 307
BsaJI CCNNGG 6 cut(s) 45, 401, 676, 751, 819, 2524
BsaWI WCCGGW 5 cut(s) 124, 170, 1151, 3760, 4326
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bse118I RCCGGY 2 cut(s) 1151, 4326
Bse1I ACTGG 8 cut(s) 391, 563, 1089, 1357, 1874, 2448, 3511, 3520
Bse21I CCTNAGG 2 cut(s) 2316, 4047
Bse3DI GCAATG 5 cut(s) 351, 492, 2027, 2468, 3436
Bse8I GATNNNNATC 1 cut(s) 1127
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 5 cut(s) 312, 396, 453, 1898, 2297
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 6 cut(s) 45, 401, 676, 751, 819, 2524
BseJI GATNNNNATC 1 cut(s) 1127
BseMI GCAATG 5 cut(s) 351, 492, 2027, 2468, 3436
BseNI ACTGG 8 cut(s) 391, 563, 1089, 1357, 1874, 2448, 3511, 3520
BseRI GAGGAG 4 cut(s) 32, 2018, 2486, 2657
BseSI GKGCMC 2 cut(s) 581, 3527
BseXI GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
BsgI GTGCAG 2 cut(s) 1839, 3681
Bsh1236I CGCG 2 cut(s) 104, 3198
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BshTI ACCGGT 2 cut(s) 1151, 4326
BshVI ATCGAT 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 581, 4177
BsiHKCI CYCGRG 2 cut(s) 115, 1769
BsiSI CCGG 6 cut(s) 125, 171, 1152, 3761, 3966, 4327
BslFI GGGAC 4 cut(s) 837, 2427, 2594, 2911
BsmAI GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
BsmFI GGGAC 4 cut(s) 837, 2427, 2594, 2911
BsmI GAATGC 2 cut(s) 2917, 3039
BsnI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BsoBI CYCGRG 2 cut(s) 115, 1769
Bsp1286I GDGCHC 4 cut(s) 581, 1905, 3527, 4177
Bsp13I TCCGGA 1 cut(s) 124
Bsp1407I TGTACA 2 cut(s) 845, 2970
Bsp1720I GCTNAGC 1 cut(s) 1665
Bsp19I CCATGG 2 cut(s) 401, 2524
BspANI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BspDI ATCGAT 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 2 cut(s) 104, 3198
BspHI TCATGA 1 cut(s) 3367
BspMAI CTGCAG 3 cut(s) 699, 1810, 2752
BspOI GCTAGC 2 cut(s) 2148, 2561
BspPI GGATC 7 cut(s) 157, 217, 265, 1844, 2043, 2540, 2553
BspQI GCTCTTC 3 cut(s) 2067, 2375, 4260
BspTI CTTAAG 1 cut(s) 2222
BsrDI GCAATG 5 cut(s) 351, 492, 2027, 2468, 3436
BsrFI RCCGGY 2 cut(s) 1151, 4326
BsrGI TGTACA 2 cut(s) 845, 2970
BsrI ACTGG 8 cut(s) 391, 563, 1089, 1357, 1874, 2448, 3511, 3520
BssAI RCCGGY 2 cut(s) 1151, 4326
BssECI CCNNGG 6 cut(s) 45, 401, 676, 751, 819, 2524
BssNI GRCGYC 1 cut(s) 307
BssSI CACGAG 1 cut(s) 4294
BssT1I CCWWGG 4 cut(s) 401, 751, 819, 2524
Bst2BI CACGAG 1 cut(s) 4294
Bst2UI CCWGG 5 cut(s) 312, 396, 453, 1898, 2297
Bst6I CTCTTC 9 cut(s) 1036, 1536, 1681, 2067, 2375, 3090, 3303, 4047, 4260
BstACI GRCGYC 1 cut(s) 307
BstAFI CTTAAG 1 cut(s) 2222
BstAUI TGTACA 2 cut(s) 845, 2970
BstDSI CCRYGG 3 cut(s) 401, 676, 2524
BstENI CCTNNNNNAGG 1 cut(s) 3612
BstFNI CGCG 2 cut(s) 104, 3198
BstH2I RGCGCY 1 cut(s) 2756
BstHHI GCGC 2 cut(s) 2755, 3200
BstMAI GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 6 cut(s) 713, 2246, 3078, 3410, 3426, 3940
BstNI CCWGG 5 cut(s) 312, 396, 453, 1898, 2297
BstNSI RCATGY 5 cut(s) 70, 896, 1333, 1535, 2311
BstPAI GACNNNNGTC 2 cut(s) 1275, 3867
BstSCI CCNGG 5 cut(s) 310, 394, 451, 1896, 2295
BstSFI CTRYAG 6 cut(s) 695, 1806, 2748, 3478, 3645, 3741
BstSLI GKGCMC 2 cut(s) 581, 3527
BstUI CGCG 2 cut(s) 104, 3198
BstV1I GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
BstV2I GAAGAC 5 cut(s) 89, 3059, 3466, 3552, 3988
BstX2I RGATCY 3 cut(s) 682, 2035, 2545
BstXI CCANNNNNNTGG 1 cut(s) 1616
BstYI RGATCY 3 cut(s) 682, 2035, 2545
Bsu15I ATCGAT 1 cut(s) 75
Bsu36I CCTNAGG 2 cut(s) 2316, 4047
BsuI GTATCC 2 cut(s) 184, 3391
BsuRI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 3 cut(s) 401, 676, 2524
BtrI CACGTC 1 cut(s) 1865
BtsI GCAGTG 1 cut(s) 194
CaiI CAGNNNCTG 3 cut(s) 437, 3224, 4264
CciI TCATGA 1 cut(s) 3367
CfoI GCGC 2 cut(s) 2755, 3200
Cfr10I RCCGGY 2 cut(s) 1151, 4326
Cfr13I GGNCC 7 cut(s) 398, 449, 824, 2293, 2608, 2853, 4129
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 1 cut(s) 296
CspAI ACCGGT 2 cut(s) 1151, 4326
DraI TTTAAA 3 cut(s) 222, 3585, 4308
DrdI GACNNNNNNGTC 1 cut(s) 1330
DseDI GACNNNNNNGTC 1 cut(s) 1330
Eam1104I CTCTTC 9 cut(s) 1036, 1536, 1681, 2067, 2375, 3090, 3303, 4047, 4260
EarI CTCTTC 9 cut(s) 1036, 1536, 1681, 2067, 2375, 3090, 3303, 4047, 4260
Eco130I CCWWGG 4 cut(s) 401, 751, 819, 2524
Eco147I AGGCCT 1 cut(s) 2233
Eco24I GRGCYC 1 cut(s) 1905
Eco32I GATATC 2 cut(s) 1195, 2202
Eco47I GGWCC 6 cut(s) 398, 449, 824, 2293, 2608, 4129
Eco47III AGCGCT 1 cut(s) 2754
Eco81I CCTNAGG 2 cut(s) 2316, 4047
Eco88I CYCGRG 2 cut(s) 115, 1769
EcoNI CCTNNNNNAGG 1 cut(s) 3612
EcoO109I RGGNCCY 2 cut(s) 2608, 2853
EcoRI GAATTC 4 cut(s) 775, 1252, 1346, 3146
EcoRII CCWGG 5 cut(s) 310, 394, 451, 1896, 2295
EcoRV GATATC 2 cut(s) 1195, 2202
EcoT14I CCWWGG 4 cut(s) 401, 751, 819, 2524
EcoT22I ATGCAT 2 cut(s) 1832, 3491
EcoT38I GRGCYC 1 cut(s) 1905
ErhI CCWWGG 4 cut(s) 401, 751, 819, 2524
FalI AAGNNNNNCTT 8 cut(s) 2404, 2436, 3069, 3101, 3369, 3401, 3939, 3971
FaqI GGGAC 4 cut(s) 837, 2427, 2594, 2911
FauNDI CATATG 3 cut(s) 787, 1159, 2679
FbaI TGATCA 4 cut(s) 1960, 2179, 3289, 4318
FblI GTMKAC 1 cut(s) 2520
FriOI GRGCYC 1 cut(s) 1905
GlaI GCGC 2 cut(s) 2754, 3199
GsuI CTGGAG 3 cut(s) 1106, 1919, 2265
HaeII RGCGCY 1 cut(s) 2756
HaeIII GGCC 4 cut(s) 2233, 2416, 2855, 3969
HapII CCGG 6 cut(s) 125, 171, 1152, 3761, 3966, 4327
HgaI GACGC 1 cut(s) 296
HhaI GCGC 2 cut(s) 2755, 3200
Hin1I GRCGYC 1 cut(s) 307
Hin6I GCGC 2 cut(s) 2753, 3198
HinP1I GCGC 2 cut(s) 2753, 3198
HincII GTYRAC 3 cut(s) 607, 1285, 4218
HindII GTYRAC 3 cut(s) 607, 1285, 4218
HindIII AAGCTT 4 cut(s) 285, 3282, 3359, 3402
HpaI GTTAAC 1 cut(s) 1285
HpaII CCGG 6 cut(s) 125, 171, 1152, 3761, 3966, 4327
HphI GGTGA 4 cut(s) 879, 1072, 3284, 3521
Hpy99I CGWCG 2 cut(s) 59, 1869
HpyCH4IV ACGT 6 cut(s) 609, 1403, 1864, 2878, 3310, 3797
HpyF10VI GCNNNNNNNGC 6 cut(s) 713, 2246, 3078, 3410, 3426, 3940
HpySE526I ACGT 6 cut(s) 609, 1403, 1864, 2878, 3310, 3797
Hsp92I GRCGYC 1 cut(s) 307
HspAI GCGC 2 cut(s) 2753, 3198
Kpn2I TCCGGA 1 cut(s) 124
Ksp22I TGATCA 4 cut(s) 1960, 2179, 3289, 4318
KspAI GTTAAC 1 cut(s) 1285
LguI GCTCTTC 3 cut(s) 2067, 2375, 4260
LmnI GCTCC 6 cut(s) 204, 969, 1393, 1900, 2005, 2246
Lsp1109I GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
MaeII ACGT 6 cut(s) 609, 1403, 1864, 2878, 3310, 3797
MaeIII GTNAC 9 cut(s) 895, 941, 1046, 1060, 1784, 1892, 1931, 3063, 4201
MfeI CAATTG 6 cut(s) 1132, 2009, 2208, 2592, 2916, 4164
MflI RGATCY 3 cut(s) 682, 2035, 2545
MhlI GDGCHC 4 cut(s) 581, 1905, 3527, 4177
MlyI GAGTC 6 cut(s) 1004, 1265, 1781, 2768, 3659, 4186
MmeI TCCRAC 3 cut(s) 1906, 2767, 3041
Mph1103I ATGCAT 2 cut(s) 1832, 3491
MroI TCCGGA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 2061
MslI CAYNNNNRTG 6 cut(s) 770, 1355, 1614, 1973, 2119, 2355
MspA1I CMGCKG 6 cut(s) 239, 956, 1241, 1661, 3221, 3786
MspCI CTTAAG 1 cut(s) 2222
MspI CCGG 6 cut(s) 125, 171, 1152, 3761, 3966, 4327
MspR9I CCNGG 5 cut(s) 312, 396, 453, 1898, 2297
MunI CAATTG 6 cut(s) 1132, 2009, 2208, 2592, 2916, 4164
Mva1269I GAATGC 2 cut(s) 2917, 3039
MvaI CCWGG 5 cut(s) 312, 396, 453, 1898, 2297
MvnI CGCG 2 cut(s) 104, 3198
MwoI GCNNNNNNNGC 6 cut(s) 713, 2246, 3078, 3410, 3426, 3940
NcoI CCATGG 2 cut(s) 401, 2524
NdeI CATATG 3 cut(s) 787, 1159, 2679
NheI GCTAGC 2 cut(s) 2144, 2557
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 941, 1060
NsiI ATGCAT 2 cut(s) 1832, 3491
NspI RCATGY 5 cut(s) 70, 896, 1333, 1535, 2311
OliI CACNNNNGTG 2 cut(s) 1355, 1973
PaeI GCATGC 1 cut(s) 1535
PagI TCATGA 1 cut(s) 3367
PceI AGGCCT 1 cut(s) 2233
PciI ACATGT 3 cut(s) 66, 892, 1329
PciSI GCTCTTC 3 cut(s) 2067, 2375, 4260
PcsI WCGNNNNNNNCGW 3 cut(s) 572, 2546, 2875
PctI GAATGC 2 cut(s) 2917, 3039
PdmI GAANNNNTTC 1 cut(s) 2061
PflMI CCANNNNNTGG 2 cut(s) 2072, 2423
PinAI ACCGGT 2 cut(s) 1151, 4326
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 6 cut(s) 1003, 1265, 1780, 2767, 3658, 4186
PpsI GAGTC 6 cut(s) 1003, 1265, 1780, 2767, 3658, 4186
PpuMI RGGWCCY 1 cut(s) 2608
PscI ACATGT 3 cut(s) 66, 892, 1329
PshAI GACNNNNGTC 2 cut(s) 1275, 3867
PshBI ATTAAT 1 cut(s) 3108
Psp5II RGGWCCY 1 cut(s) 2608
Psp6I CCWGG 5 cut(s) 310, 394, 451, 1896, 2295
PspGI CCWGG 5 cut(s) 310, 394, 451, 1896, 2295
PspPI GGNCC 7 cut(s) 398, 449, 824, 2293, 2608, 2853, 4129
PspPPI RGGWCCY 1 cut(s) 2608
PstI CTGCAG 3 cut(s) 699, 1810, 2752
PstNI CAGNNNCTG 3 cut(s) 437, 3224, 4264
PsuI RGATCY 3 cut(s) 682, 2035, 2545
PvuI CGATCG 1 cut(s) 75
PvuII CAGCTG 6 cut(s) 239, 956, 1241, 1661, 3221, 3786
RseI CAYNNNNRTG 6 cut(s) 770, 1355, 1614, 1973, 2119, 2355
SapI GCTCTTC 3 cut(s) 2067, 2375, 4260
Sau96I GGNCC 7 cut(s) 398, 449, 824, 2293, 2608, 2853, 4129
SbfI CCTGCAGG 1 cut(s) 699
ScaI AGTACT 1 cut(s) 1396
SchI GAGTC 6 cut(s) 1004, 1265, 1781, 2768, 3659, 4186
ScrFI CCNGG 5 cut(s) 312, 396, 453, 1898, 2297
SdaI CCTGCAGG 1 cut(s) 699
SduI GDGCHC 4 cut(s) 581, 1905, 3527, 4177
SfcI CTRYAG 6 cut(s) 695, 1806, 2748, 3478, 3645, 3741
SinI GGWCC 6 cut(s) 398, 449, 824, 2293, 2608, 4129
SmiMI CAYNNNNRTG 6 cut(s) 770, 1355, 1614, 1973, 2119, 2355
SmlI CTYRAG 9 cut(s) 1111, 1712, 2017, 2222, 2756, 2841, 3701, 3827, 3971
SmoI CTYRAG 9 cut(s) 1111, 1712, 2017, 2222, 2756, 2841, 3701, 3827, 3971
SpeI ACTAGT 1 cut(s) 623
SphI GCATGC 1 cut(s) 1535
Sse8387I CCTGCAGG 1 cut(s) 699
SseBI AGGCCT 1 cut(s) 2233
SspI AATATT 3 cut(s) 737, 1372, 3253
StuI AGGCCT 1 cut(s) 2233
StyD4I CCNGG 5 cut(s) 310, 394, 451, 1896, 2295
StyI CCWWGG 4 cut(s) 401, 751, 819, 2524
TaiI ACGT 6 cut(s) 612, 1406, 1867, 2881, 3313, 3800
TatI WGTACW 5 cut(s) 845, 1394, 2970, 3975, 4117
TauI GCSGC 3 cut(s) 44, 2461, 3072
TseFI GTSAC 2 cut(s) 941, 1060
TseI GCWGC 9 cut(s) 956, 1661, 2617, 2750, 3218, 3221, 3695, 4079, 4106
Tsp45I GTSAC 2 cut(s) 941, 1060
TspGWI ACGGA 6 cut(s) 564, 596, 693, 1718, 2538, 3553
Van91I CCANNNNNTGG 2 cut(s) 2072, 2423
Vha464I CTTAAG 1 cut(s) 2222
VneI GTGCAC 1 cut(s) 577
VpaK11BI GGWCC 6 cut(s) 398, 449, 824, 2293, 2608, 4129
VspI ATTAAT 1 cut(s) 3108
XagI CCTNNNNNAGG 1 cut(s) 3612
XapI RAATTY 9 cut(s) 775, 925, 1207, 1252, 1346, 1522, 2996, 3122, 3146
XbaI TCTAGA 2 cut(s) 868, 2254
XceI RCATGY 5 cut(s) 70, 896, 1333, 1535, 2311
XcmI CCANNNNNNNNNTGG 1 cut(s) 1616
XmiI GTMKAC 1 cut(s) 2520
XmnI GAANNNNTTC 1 cut(s) 2061
ZrmI AGTACT 1 cut(s) 1396
Zsp2I ATGCAT 2 cut(s) 1832, 3491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.