Rh5BG053400

SNF2 family N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004421
Physical Location & Seq
Forward (+)
4256334 .. 4265572
9239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG053400.1

Sequence Viewer

Length: 4344 bp
ATGTTGATGGCGGTGGAGGAGGGTTCTAATTGTGGATTCGCCGCCGAGGATTTCGACGGCGAGGACATGTCGATCGATCTCGATACATTCTATCGTCTTCTCGAGGAAGAACCGCCGAGTTGTCCGGAGGATTCATCATTGGGAAGCGGACCACAAGCTGAAGCAGTTTCCGGTGCTGATTACCGTGAGGATACACAGCTCCAAAGTGGATCGCAAGTTTTAAAAGCAGAATCATCAGCTGATTTAGGGGGTTTCGGATCCTGGCATCCTCCATACAGCTCTGAAGCTTCGGATTCTGGGGCAGGGCGTCCAGGTGGTTCCTTTGATTATGCAGGGAACCCTGCAATGTTCTCTGACTACAAGGATAGCAAACCAACAGCGTACACTGGCTCTCCTGGTTCATGGCATCCTCCATATATCTCAGAAGCATCAGATTCTGTGGCAGGGGGTCCAGGTGGTTCCTTTGAGTGTGGAGGGAACCCTGCAATGTCTTTAGACAGGAAACCACCAGCACAGACCAGCTCTCATGGGCACATGTTCTCTACAAGTCTTAAAGACTGGTTTTCGTTGGTTCCTTGCACGGAGACTTACTTAACTGAGAGGGTTGACATTTCACAGCCCACTAGTAGCACCACTTCTAGTTTTGAAGAAGGACATACTAATCATGTTTTAGACCACGGAGATCTTAATGTCCTGCAGGGGAAAGCAGATGTGGCAGGGAAAGTTGATTCTGAATATTCTTCACAAAACCTTGGTATTGATAACATGGACATGAATTCCAGACCGTATGGTGCTTTGGGGGAAAACACCCCAGAAACCTTGGGACCATCGGAAAATAATTCTTGTACATCTATGGAAATACCCTTTCTAGATGTAGATGTATGTTCACCACATGTTACTTCTCCCGAATCTACTCTCTGTCAAAATTCTGATCTTTTCAGTGACCATTATACAGCTGCGGATGGTATGAGCTTAGACAATAGATATTTGGCAGAGTCCTCAATCCAGCATAGTCCTTATAGCTACTACTCTACATTATTTCCAAGTAACAAAGAAATGATGACTAATGTGAAGGATGAATCACTGGAGTTTCAAACTGATAGTTCATGCTCAAGCAGTAAGATGAATATCAATTGTCAGGAGGGAATAACCGGTACATATGGCTTTGATTCGCCAATGATTGATGCTTCAGATATCAAGGAGTGGAATTTTGATTATGGAAGATATAATTGTATTTCGGCTGTTAGTGGGAATTCTTCATTGGATGCGGACTCTTGTCCTGTTGACAACAAGGCTTCAGTCAAGCCTTTGGGTTCTACTGAGACATACATGTCAAGCAAACGGGAATTCACTGGTGTGAAGGATGAAAATATTGATGAGTTGGTTGCTCCTAGTACTGATACGTTTCATTCTTTTTCATTCATGGATGACAGTAGAAAGCCATCTTACAATGCTGATGGTAGCTCTTTTGACAAGGAACCAAAGCTCTCAGGTTATGATGTATCTACTCAGCATTTTGGAAATTCAGGGCATGCTAAAGAAGAGATGATTGTTGATACTAAGAGAACTTATTATTCTGAAGGTAATATAAATGGAAGTTCTTTACCCCATGTTGGTGGTGGATATGTGAATCTAAATGGTTTGGAACATCAGTTGCCAGCTGCTCAGCCATTCTCTTCAAACAGGAATCAGGGTTATAGTACGGACAGACTTGAGGGTAAACACTGTCTGCCTAAGAGCATGGGTTTTCCTTCTTCAAAAGTCAGCCCTGAGTCTATTCATAGTAACTTCTCTGAAAAATCCCCTGCAGAAGATGACTATGATGTATGCATTATTGAAGATAAGAGTGATCCTGCACCCACACGTCGCCTTCCAGTGGTTAGCAATACTCGTTACCCGGCGCCCTTGAATTGCTCTCTAGCAGTTGGAAGTAACATTGCTAATTCACAACAATCTAGTGATCAAGACACTGGAGTGGGAGGCATACGATTCAGGACAAGGGAGGAGCAATTGATCTTGAGAGTAGCATTGCAGGACCTTTCACAGCCCAAGTCAGAAGCTCTTCCACCAGATGGAGTTTTAACAGTACCTCTCTTACGACATCAGAGAATCGCATTGTCATGGATGGTTCAGAAGGAGACAGCTAGCTTGCCTTGTTGCGGAGGAATACTTGCAGATGATCAGGGATTGGGAAAAACGATATCGACAATTGCACTCATACTTAAGGAAAGGCCTCCTGCTTCTGGAGCCTGTCTAGATGAAAAAAAGTGCAAGCTGGAAACTCTGGATTTGGACCAGGATGATGACATGCTTCCTGAGGTTAGCAGAAGGAAGCAAGATGCTGATGCTCATTCAAGTGTCTCAAATGAAACTTCTGAGAAGAGCATGAAATCTTTGATACAAACAAAGGGAAGGCCAGCTTGTGGAACACTCGTTGTTTGTCCCACCAGTGTCTTGCGGCAATGGGCAGAGGAGTTGCGTAATAAAATAACAGAAAAAGCTAAACTCTCAGTGCTAGTCTACCATGGAGGCAATCGAACGAGGGATCCGTGTGAGCTAGCTAAGTATGATGTTGTCCTCACAACATATTCAATTGTCAGCATGGAGGTCCCAAAGCAGCCTCTTGCTGATGGAGAAGATGAGGAGAAAGGAAAGCGAGAGGAGTATGATTCTCCACATATGGGGTTTTCATCTAAGAAAAGGAAATATCCTAATAAATGCTCAAAGGGTAAGAAGGGATTGGAGACTGCAGCGCTTGAGTCTCTTGCTCGCCCTCTTGCTAAGGTTGGATGGTTTAGGGTTGTCTTGGATGAAGCCCAGAGTATTAAGAATCACAGAACTCAAGTAGCTAGGGCCTGTTGGGGGCTTCGAGCGAAACGTAGGTGGTGCTTATCAGGGACACCTATCCAGAATGCGATTGATGATCTTTATAGCTACTTCAGATTTCTGAGATATGACCCTTATGCGGTGTACAAGTCGTTTTGTGCAAAAATAAAATTTCCAATTAGTAAGAATCCAACAAAAGGGTACAGAATGCTACAAGCTGTTCTGAAGACAATTATGTTACGCCGCACAAAAGGCACTCTTCTTGATGGAGAACCTATTATTAATTTACCACCAAAATTTATAGAACTGAAAAGGGTGGAATTCTCCGCGGAAGAACGAGATTTTTACTCAAGGCTAGAGAGTGATTCACGTGCTCAATTTGAAGAATATGCAGCTGCTGGAACTGTGAAACAAAATTATGTTAATATTTTATTGATGCTCTTGCGACTTCGACAAGCTTGTGATCACCCCCTTCTTGTCAGACGTTATGAATCACAGTCTTTATGGAAATCTTCGGTTGAGAAGGCAAAGAAGCTTACTCATGACAAACAAGTATCCCTTCTGAATTGTTTGGAAGCTTCTTTGGCAATATGCGGTATCTGCAATGATGCACCTGAAGATGCCGTTGTTTCTGAATGTGGTCATGTCTTCTGTAGCCAATGCATTTGTGACTATCTCACTGGTGATGACAACCAGTGCCCCAACACAAGTTGCAAAGTTCGACTGAATGTGTCTTCCGTCTTTTCAAAAGCCACTTTAAACAGTTCGCTTTCTGACCAACCTAGTCAAGGGGGCATGGGTTCTGAAGTTTTTGATGCTGTAGAGTCTTTCTATGAGGATAGCTCGTACAATTCATCCAAGATTAAGGCTGCACTTGAGGTTCTCTGCTTGATGTGTAAACCAAAGACTTGCACTACCGAAAATAGTTGCTTACCGGAAAGCGTTGATAAAAATGCCAGCTGTTCTACAACATCTTTTGACATTGATGGGGCTGAGTCCCTTGAGGACAGTTCTGATGGACAGAACTTGGATGTGGACAAAAGTCCTAAGAAAATTGAGAAGGTAGTTCGAGAAAAAGCGATAGTCTTTTCACAGTGGACTAGGATGCTGGACTTGCTTGAAGCGTGTCTTAAAACTTCCGGCCTTGAGTACAGAAGACTTGATGGAACAATGTCAGTTGTTGCCAGAGATAAAGCTGTAAAGGATTTTAACACTCTTCCTGAGGTGTCAGTTATGATTATGTCTTTGAAAGCTGCTAGTCTTGGTCTGAACATGGTTGCAGCCTGCCATGTACTTCTTTTGGACCTGTGGTGGAATCCTACGACTGAAGATCAAGCAATTGATAGAGCACATCGTATTGGGCAGACTCGTCCTGTTACGGTTTTACGGTTGACTGTGAAAGATACGGTCGAAGATCGTATTTTAGCTCTTCAGGTACTGTCCTCGCATTATTTCATTTTTTTTTTCTCGTGTTGTAGTTTAAAAAGTGTTAATCACTACCGGTATGAGATTGAATAG

Protein Analysis

1447

Amino Acids

159.28

Weight (kDa)

5.1

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 701 - 1099 4.6e-65 SNF2-related domain
zf-C3HC4 PF00097 1140 - 1176 3.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 1140 - 1176 1.2e-07 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 1296 - 1396 8.9e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1330
AccB1I GGYRCC 1 cut(s) 1900
AccB7I CCANNNNNTGG 2 cut(s) 2072, 2423
AccI GTMKAC 1 cut(s) 2520
AccII CGCG 1 cut(s) 3155
AccIII TCCGGA 1 cut(s) 124
AclWI GGATC 6 cut(s) 217, 252, 265, 1844, 2540, 2553
AcsI RAATTY 9 cut(s) 775, 925, 1207, 1252, 1346, 1522, 2996, 3122, 3146
AcvI CACGTG 1 cut(s) 3197
AcyI GRCGYC 2 cut(s) 307, 1901
AfeI AGCGCT 1 cut(s) 2754
AflII CTTAAG 1 cut(s) 2222
AflIII ACRYGT 5 cut(s) 66, 534, 892, 1329, 1862
AgeI ACCGGT 2 cut(s) 1151, 4326
AhlI ACTAGT 1 cut(s) 623
AjiI CACGTC 1 cut(s) 1865
AjnI CCWGG 5 cut(s) 260, 310, 394, 451, 2295
AjuI GAANNNNNNNTTGG 2 cut(s) 1244, 1276
AleI CACNNNNGTG 2 cut(s) 1355, 1973
AloI GAACNNNNNNTCC 2 cut(s) 2530, 2562
Alw21I GWGCWC 2 cut(s) 3202, 4177
Alw26I GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
AlwI GGATC 6 cut(s) 217, 252, 265, 1844, 2540, 2553
AlwNI CAGNNNCTG 3 cut(s) 437, 3224, 4264
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 2754
AoxI GGCC 4 cut(s) 2231, 2414, 2853, 3967
ApeKI GCWGC 9 cut(s) 956, 1661, 2617, 2750, 3218, 3221, 3695, 4079, 4106
ApoI RAATTY 9 cut(s) 775, 925, 1207, 1252, 1346, 1522, 2996, 3122, 3146
AseI ATTAAT 1 cut(s) 3108
AsiGI ACCGGT 2 cut(s) 1151, 4326
Asp700I GAANNNNTTC 1 cut(s) 2061
AspLEI GCGC 2 cut(s) 1903, 2755
AspS9I GGNCC 8 cut(s) 149, 449, 824, 2035, 2293, 2608, 2853, 4129
AsuC2I CCSGG 1 cut(s) 1898
AsuHPI GGTGA 3 cut(s) 879, 3284, 3521
AsuNHI GCTAGC 2 cut(s) 2144, 2557
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 7 cut(s) 149, 449, 824, 2035, 2293, 2608, 4129
AxyI CCTNAGG 2 cut(s) 2316, 4047
BaeGI GKGCMC 2 cut(s) 534, 3527
BamHI GGATCC 2 cut(s) 257, 2545
BanI GGYRCC 1 cut(s) 1900
BarI GAAGNNNNNNTAC 2 cut(s) 619, 651
BauI CACGAG 1 cut(s) 4294
BbrPI CACGTG 1 cut(s) 3197
BbsI GAAGAC 5 cut(s) 89, 3059, 3466, 3552, 3988
Bbv12I GWGCWC 2 cut(s) 3202, 4177
BbvI GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
BceAI ACGGC 2 cut(s) 73, 3434
BciT130I CCWGG 5 cut(s) 262, 312, 396, 453, 2297
BciVI GTATCC 2 cut(s) 184, 3391
BclI TGATCA 3 cut(s) 1960, 2179, 3289
BcnI CCSGG 1 cut(s) 1898
BcoDI GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
BcuI ACTAGT 1 cut(s) 623
BfmI CTRYAG 5 cut(s) 695, 1806, 2748, 3478, 3645
BfoI RGCGCY 2 cut(s) 1904, 2756
BfrI CTTAAG 1 cut(s) 2222
BfuI GTATCC 2 cut(s) 184, 3391
BglII AGATCT 1 cut(s) 682
BlpI GCTNAGC 1 cut(s) 1665
BmcAI AGTACT 1 cut(s) 1396
Bme1390I CCNGG 6 cut(s) 262, 312, 396, 453, 1898, 2297
Bme18I GGWCC 7 cut(s) 149, 449, 824, 2035, 2293, 2608, 4129
BmeT110I CYCGRG 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 1865
BmgT120I GGNCC 8 cut(s) 149, 449, 824, 2035, 2293, 2608, 2853, 4129
BmrFI CCNGG 6 cut(s) 262, 312, 396, 453, 1898, 2297
BmtI GCTAGC 2 cut(s) 2148, 2561
BoxI GACNNNNGTC 2 cut(s) 1275, 3867
BpiI GAAGAC 5 cut(s) 89, 3059, 3466, 3552, 3988
BplI GAGNNNNNCTC 2 cut(s) 3653, 3685
BpmI CTGGAG 3 cut(s) 1106, 1992, 2265
Bpu10I CCTNAGC 1 cut(s) 2781
Bpu1102I GCTNAGC 1 cut(s) 1665
BpuEI CTTGAG 9 cut(s) 1096, 1733, 2038, 2777, 2826, 3160, 3722, 3848, 3992
BpuMI CCSGG 1 cut(s) 1898
Bsa29I ATCGAT 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 3197
BsaBI GATNNNNATC 1 cut(s) 1127
BsaHI GRCGYC 2 cut(s) 307, 1901
BsaJI CCNNGG 6 cut(s) 45, 676, 751, 819, 2524, 3153
BsaWI WCCGGW 5 cut(s) 124, 170, 1151, 3760, 4326
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bse118I RCCGGY 2 cut(s) 1151, 4326
Bse1I ACTGG 9 cut(s) 391, 563, 1089, 1357, 1874, 1975, 2448, 3511, 3520
Bse21I CCTNAGG 2 cut(s) 2316, 4047
Bse3DI GCAATG 6 cut(s) 351, 492, 1935, 2027, 2468, 3436
Bse8I GATNNNNATC 1 cut(s) 1127
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 5 cut(s) 262, 312, 396, 453, 2297
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 6 cut(s) 45, 676, 751, 819, 2524, 3153
BseJI GATNNNNATC 1 cut(s) 1127
BseMI GCAATG 6 cut(s) 351, 492, 1935, 2027, 2468, 3436
BseNI ACTGG 9 cut(s) 391, 563, 1089, 1357, 1874, 1975, 2448, 3511, 3520
BseRI GAGGAG 5 cut(s) 32, 2018, 2486, 2657, 2675
BseSI GKGCMC 2 cut(s) 534, 3527
BseXI GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
BsgI GTGCAG 2 cut(s) 1839, 3681
Bsh1236I CGCG 1 cut(s) 3155
Bsh1285I CGRYCG 2 cut(s) 75, 4236
BshFI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BshNI GGYRCC 1 cut(s) 1900
BshTI ACCGGT 2 cut(s) 1151, 4326
BshVI ATCGAT 1 cut(s) 75
BsiEI CGRYCG 2 cut(s) 75, 4236
BsiHKAI GWGCWC 2 cut(s) 3202, 4177
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 7 cut(s) 125, 171, 1152, 1898, 3761, 3966, 4327
BslFI GGGAC 5 cut(s) 837, 2427, 2594, 2911, 3808
BsmAI GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
BsmFI GGGAC 5 cut(s) 837, 2427, 2594, 2911, 3808
BsmI GAATGC 2 cut(s) 2917, 3039
BsnI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 4 cut(s) 534, 3202, 3527, 4177
Bsp13I TCCGGA 1 cut(s) 124
Bsp1407I TGTACA 2 cut(s) 845, 2970
Bsp1720I GCTNAGC 1 cut(s) 1665
Bsp19I CCATGG 1 cut(s) 2524
BspANI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BspDI ATCGAT 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 3155
BspHI TCATGA 1 cut(s) 3367
BspMAI CTGCAG 3 cut(s) 699, 1810, 2752
BspOI GCTAGC 2 cut(s) 2148, 2561
BspPI GGATC 6 cut(s) 217, 252, 265, 1844, 2540, 2553
BspQI GCTCTTC 3 cut(s) 2067, 2375, 4260
BspT107I GGYRCC 1 cut(s) 1900
BspTI CTTAAG 1 cut(s) 2222
BsrDI GCAATG 6 cut(s) 351, 492, 1935, 2027, 2468, 3436
BsrFI RCCGGY 2 cut(s) 1151, 4326
BsrGI TGTACA 2 cut(s) 845, 2970
BsrI ACTGG 9 cut(s) 391, 563, 1089, 1357, 1874, 1975, 2448, 3511, 3520
BssAI RCCGGY 2 cut(s) 1151, 4326
BssECI CCNNGG 6 cut(s) 45, 676, 751, 819, 2524, 3153
BssNI GRCGYC 2 cut(s) 307, 1901
BssSI CACGAG 1 cut(s) 4294
BssT1I CCWWGG 3 cut(s) 751, 819, 2524
Bst2BI CACGAG 1 cut(s) 4294
Bst2UI CCWGG 5 cut(s) 262, 312, 396, 453, 2297
Bst6I CTCTTC 7 cut(s) 1536, 1681, 2067, 2375, 3090, 4047, 4260
BstACI GRCGYC 2 cut(s) 307, 1901
BstAFI CTTAAG 1 cut(s) 2222
BstAUI TGTACA 2 cut(s) 845, 2970
BstBAI YACGTR 1 cut(s) 3197
BstDSI CCRYGG 3 cut(s) 676, 2524, 3153
BstENI CCTNNNNNAGG 1 cut(s) 3612
BstFNI CGCG 1 cut(s) 3155
BstH2I RGCGCY 2 cut(s) 1904, 2756
BstHHI GCGC 2 cut(s) 1903, 2755
BstMAI GTCTC 6 cut(s) 578, 1316, 2132, 2365, 2738, 2766
BstMCI CGRYCG 2 cut(s) 75, 4236
BstMWI GCNNNNNNNGC 6 cut(s) 713, 2246, 3078, 3410, 3426, 3940
BstNI CCWGG 5 cut(s) 262, 312, 396, 453, 2297
BstNSI RCATGY 6 cut(s) 70, 538, 896, 1333, 1535, 2311
BstPAI GACNNNNGTC 2 cut(s) 1275, 3867
BstSCI CCNGG 6 cut(s) 260, 310, 394, 451, 1896, 2295
BstSFI CTRYAG 5 cut(s) 695, 1806, 2748, 3478, 3645
BstSLI GKGCMC 2 cut(s) 534, 3527
BstUI CGCG 1 cut(s) 3155
BstV1I GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
BstV2I GAAGAC 5 cut(s) 89, 3059, 3466, 3552, 3988
BstX2I RGATCY 3 cut(s) 257, 682, 2545
BstXI CCANNNNNNTGG 1 cut(s) 1616
BstYI RGATCY 3 cut(s) 257, 682, 2545
Bsu15I ATCGAT 1 cut(s) 75
Bsu36I CCTNAGG 2 cut(s) 2316, 4047
BsuI GTATCC 2 cut(s) 184, 3391
BsuRI GGCC 4 cut(s) 2233, 2416, 2855, 3969
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 3 cut(s) 676, 2524, 3153
BtrI CACGTC 1 cut(s) 1865
CaiI CAGNNNCTG 3 cut(s) 437, 3224, 4264
CciI TCATGA 1 cut(s) 3367
CfoI GCGC 2 cut(s) 1903, 2755
Cfr10I RCCGGY 2 cut(s) 1151, 4326
Cfr13I GGNCC 8 cut(s) 149, 449, 824, 2035, 2293, 2608, 2853, 4129
Cfr42I CCGCGG 1 cut(s) 3156
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 1 cut(s) 296
CspAI ACCGGT 2 cut(s) 1151, 4326
DinI GGCGCC 1 cut(s) 1902
DraI TTTAAA 3 cut(s) 222, 3585, 4308
DrdI GACNNNNNNGTC 1 cut(s) 1330
DseDI GACNNNNNNGTC 1 cut(s) 1330
Eam1104I CTCTTC 7 cut(s) 1536, 1681, 2067, 2375, 3090, 4047, 4260
EarI CTCTTC 7 cut(s) 1536, 1681, 2067, 2375, 3090, 4047, 4260
Eco130I CCWWGG 3 cut(s) 751, 819, 2524
Eco147I AGGCCT 1 cut(s) 2233
Eco32I GATATC 2 cut(s) 1195, 2202
Eco47I GGWCC 7 cut(s) 149, 449, 824, 2035, 2293, 2608, 4129
Eco47III AGCGCT 1 cut(s) 2754
Eco72I CACGTG 1 cut(s) 3197
Eco81I CCTNAGG 2 cut(s) 2316, 4047
Eco88I CYCGRG 1 cut(s) 101
EcoNI CCTNNNNNAGG 1 cut(s) 3612
EcoO109I RGGNCCY 3 cut(s) 2035, 2608, 2853
EcoRI GAATTC 4 cut(s) 775, 1252, 1346, 3146
EcoRII CCWGG 5 cut(s) 260, 310, 394, 451, 2295
EcoRV GATATC 2 cut(s) 1195, 2202
EcoT14I CCWWGG 3 cut(s) 751, 819, 2524
EcoT22I ATGCAT 2 cut(s) 1832, 3491
EgeI GGCGCC 1 cut(s) 1902
EheI GGCGCC 1 cut(s) 1902
ErhI CCWWGG 3 cut(s) 751, 819, 2524
FalI AAGNNNNNCTT 8 cut(s) 2404, 2436, 3069, 3101, 3369, 3401, 3939, 3971
FaqI GGGAC 5 cut(s) 837, 2427, 2594, 2911, 3808
FauNDI CATATG 2 cut(s) 1159, 2679
FbaI TGATCA 3 cut(s) 1960, 2179, 3289
FblI GTMKAC 1 cut(s) 2520
GlaI GCGC 2 cut(s) 1902, 2754
GsuI CTGGAG 3 cut(s) 1106, 1992, 2265
HaeII RGCGCY 2 cut(s) 1904, 2756
HaeIII GGCC 4 cut(s) 2233, 2416, 2855, 3969
HapII CCGG 7 cut(s) 125, 171, 1152, 1898, 3761, 3966, 4327
HgaI GACGC 1 cut(s) 296
HhaI GCGC 2 cut(s) 1903, 2755
Hin1I GRCGYC 2 cut(s) 307, 1901
Hin6I GCGC 2 cut(s) 1901, 2753
HinP1I GCGC 2 cut(s) 1901, 2753
HincII GTYRAC 3 cut(s) 607, 1285, 4218
HindII GTYRAC 3 cut(s) 607, 1285, 4218
HindIII AAGCTT 4 cut(s) 285, 3282, 3359, 3402
HpaII CCGG 7 cut(s) 125, 171, 1152, 1898, 3761, 3966, 4327
HphI GGTGA 3 cut(s) 879, 3284, 3521
Hpy99I CGWCG 2 cut(s) 59, 1869
HpyCH4IV ACGT 5 cut(s) 1403, 1864, 2878, 3196, 3310
HpyF10VI GCNNNNNNNGC 6 cut(s) 713, 2246, 3078, 3410, 3426, 3940
HpySE526I ACGT 5 cut(s) 1403, 1864, 2878, 3196, 3310
Hsp92I GRCGYC 2 cut(s) 307, 1901
HspAI GCGC 2 cut(s) 1901, 2753
KasI GGCGCC 1 cut(s) 1900
Kpn2I TCCGGA 1 cut(s) 124
Ksp22I TGATCA 3 cut(s) 1960, 2179, 3289
KspI CCGCGG 1 cut(s) 3156
LguI GCTCTTC 3 cut(s) 2067, 2375, 4260
LmnI GCTCC 4 cut(s) 204, 1393, 2005, 2246
Lsp1109I GCAGC 9 cut(s) 943, 1648, 2629, 2762, 3208, 3230, 3682, 4066, 4118
MaeII ACGT 5 cut(s) 1403, 1864, 2878, 3196, 3310
MaeIII GTNAC 9 cut(s) 895, 941, 1046, 1784, 1892, 1931, 3063, 3494, 4201
MfeI CAATTG 5 cut(s) 1132, 2009, 2208, 2592, 4164
MflI RGATCY 3 cut(s) 257, 682, 2545
MhlI GDGCHC 4 cut(s) 534, 3202, 3527, 4177
Mly113I GGCGCC 1 cut(s) 1901
MlyI GAGTC 7 cut(s) 1004, 1265, 1781, 2768, 3659, 3830, 4186
MmeI TCCRAC 3 cut(s) 1906, 2767, 3041
Mph1103I ATGCAT 2 cut(s) 1832, 3491
MroI TCCGGA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 2061
MslI CAYNNNNRTG 6 cut(s) 770, 1355, 1614, 1973, 2119, 2355
MspA1I CMGCKG 6 cut(s) 239, 956, 1661, 3155, 3221, 3786
MspCI CTTAAG 1 cut(s) 2222
MspI CCGG 7 cut(s) 125, 171, 1152, 1898, 3761, 3966, 4327
MspR9I CCNGG 6 cut(s) 262, 312, 396, 453, 1898, 2297
MunI CAATTG 5 cut(s) 1132, 2009, 2208, 2592, 4164
Mva1269I GAATGC 2 cut(s) 2917, 3039
MvaI CCWGG 5 cut(s) 262, 312, 396, 453, 2297
MvnI CGCG 1 cut(s) 3155
MwoI GCNNNNNNNGC 6 cut(s) 713, 2246, 3078, 3410, 3426, 3940
NarI GGCGCC 1 cut(s) 1901
NciI CCSGG 1 cut(s) 1898
NcoI CCATGG 1 cut(s) 2524
NdeI CATATG 2 cut(s) 1159, 2679
NheI GCTAGC 2 cut(s) 2144, 2557
NmeAIII GCCGAG 2 cut(s) 70, 141
NmuCI GTSAC 2 cut(s) 941, 3494
NsiI ATGCAT 2 cut(s) 1832, 3491
NspI RCATGY 6 cut(s) 70, 538, 896, 1333, 1535, 2311
OliI CACNNNNGTG 2 cut(s) 1355, 1973
PaeI GCATGC 1 cut(s) 1535
PaeR7I CTCGAG 1 cut(s) 101
PagI TCATGA 1 cut(s) 3367
PceI AGGCCT 1 cut(s) 2233
PciI ACATGT 4 cut(s) 66, 534, 892, 1329
PciSI GCTCTTC 3 cut(s) 2067, 2375, 4260
PcsI WCGNNNNNNNCGW 2 cut(s) 2546, 2875
PctI GAATGC 2 cut(s) 2917, 3039
PdmI GAANNNNTTC 1 cut(s) 2061
PflMI CCANNNNNTGG 2 cut(s) 2072, 2423
PinAI ACCGGT 2 cut(s) 1151, 4326
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 7 cut(s) 1003, 1265, 1780, 2767, 3658, 3829, 4186
PluTI GGCGCC 1 cut(s) 1904
PmaCI CACGTG 1 cut(s) 3197
PmlI CACGTG 1 cut(s) 3197
PpsI GAGTC 7 cut(s) 1003, 1265, 1780, 2767, 3658, 3829, 4186
Ppu21I YACGTR 1 cut(s) 3197
PpuMI RGGWCCY 2 cut(s) 2035, 2608
PscI ACATGT 4 cut(s) 66, 534, 892, 1329
PshAI GACNNNNGTC 2 cut(s) 1275, 3867
PshBI ATTAAT 1 cut(s) 3108
Psp5II RGGWCCY 2 cut(s) 2035, 2608
Psp6I CCWGG 5 cut(s) 260, 310, 394, 451, 2295
PspCI CACGTG 1 cut(s) 3197
PspGI CCWGG 5 cut(s) 260, 310, 394, 451, 2295
PspPI GGNCC 8 cut(s) 149, 449, 824, 2035, 2293, 2608, 2853, 4129
PspPPI RGGWCCY 2 cut(s) 2035, 2608
PstI CTGCAG 3 cut(s) 699, 1810, 2752
PstNI CAGNNNCTG 3 cut(s) 437, 3224, 4264
PsuI RGATCY 3 cut(s) 257, 682, 2545
PvuI CGATCG 1 cut(s) 75
PvuII CAGCTG 5 cut(s) 239, 956, 1661, 3221, 3786
RseI CAYNNNNRTG 6 cut(s) 770, 1355, 1614, 1973, 2119, 2355
SacII CCGCGG 1 cut(s) 3156
SapI GCTCTTC 3 cut(s) 2067, 2375, 4260
Sau96I GGNCC 8 cut(s) 149, 449, 824, 2035, 2293, 2608, 2853, 4129
SbfI CCTGCAGG 1 cut(s) 699
ScaI AGTACT 1 cut(s) 1396
SchI GAGTC 7 cut(s) 1004, 1265, 1781, 2768, 3659, 3830, 4186
ScrFI CCNGG 6 cut(s) 262, 312, 396, 453, 1898, 2297
SdaI CCTGCAGG 1 cut(s) 699
SduI GDGCHC 4 cut(s) 534, 3202, 3527, 4177
SfcI CTRYAG 5 cut(s) 695, 1806, 2748, 3478, 3645
SfoI GGCGCC 1 cut(s) 1902
Sfr274I CTCGAG 1 cut(s) 101
Sfr303I CCGCGG 1 cut(s) 3156
SgrBI CCGCGG 1 cut(s) 3156
SinI GGWCC 7 cut(s) 149, 449, 824, 2035, 2293, 2608, 4129
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 6 cut(s) 770, 1355, 1614, 1973, 2119, 2355
SpeI ACTAGT 1 cut(s) 623
SphI GCATGC 1 cut(s) 1535
Sse8387I CCTGCAGG 1 cut(s) 699
SseBI AGGCCT 1 cut(s) 2233
SspDI GGCGCC 1 cut(s) 1900
SspI AATATT 3 cut(s) 737, 1372, 3253
StuI AGGCCT 1 cut(s) 2233
StyD4I CCNGG 6 cut(s) 260, 310, 394, 451, 1896, 2295
StyI CCWWGG 3 cut(s) 751, 819, 2524
TaiI ACGT 5 cut(s) 1406, 1867, 2881, 3199, 3313
TatI WGTACW 5 cut(s) 845, 1394, 2970, 3975, 4117
TauI GCSGC 3 cut(s) 44, 2461, 3072
TseFI GTSAC 2 cut(s) 941, 3494
TseI GCWGC 9 cut(s) 956, 1661, 2617, 2750, 3218, 3221, 3695, 4079, 4106
Tsp45I GTSAC 2 cut(s) 941, 3494
TspGWI ACGGA 5 cut(s) 596, 693, 1718, 2538, 3553
Van91I CCANNNNNTGG 2 cut(s) 2072, 2423
Vha464I CTTAAG 1 cut(s) 2222
VpaK11BI GGWCC 7 cut(s) 149, 449, 824, 2035, 2293, 2608, 4129
VspI ATTAAT 1 cut(s) 3108
XagI CCTNNNNNAGG 1 cut(s) 3612
XapI RAATTY 9 cut(s) 775, 925, 1207, 1252, 1346, 1522, 2996, 3122, 3146
XbaI TCTAGA 2 cut(s) 868, 2254
XceI RCATGY 6 cut(s) 70, 538, 896, 1333, 1535, 2311
XcmI CCANNNNNNNNNTGG 1 cut(s) 1616
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 2520
XmnI GAANNNNTTC 1 cut(s) 2061
ZrmI AGTACT 1 cut(s) 1396
Zsp2I ATGCAT 2 cut(s) 1832, 3491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.