FvH4_3g06330

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012588
Physical Location & Seq
Forward (+)
3634241 .. 3636915
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06330.t1

Sequence Viewer

Length: 960 bp
ATGGGTGTTGGCTCTCATCGGCATTCTGCATTATTTTTCTTGTTTCTTTTCTTTAGTTCAGGTTCAGGTGTTCCAAAGAATCCTCCATTGGAAGCAATCCAACAAAACAAAATACAAGTGAATGATGAAAACCATATACTTTTCTCTTCTGCAGTGTCTACCGCCCAGCATGATACGATACCTGTTGTAAACCCAAGTCCAACTGTAACAACTCCCACACTTGTGTTCCCGGCATCCCCACCACCACCGGCCACCGTGACAACCCCTACCACTCCCATCACAACCCCGACGTCTCCCACCATAACCCCCACAACTCCCTACATAACACCGACGACTCCCTACATAACCCCGACGACTCCCTACATAACCCCGACGACTCCCACCATAACCCCGACAACTCCCACCACAACCCCAACAACTCCTACCACAACCCCAACAACTCCTACCACAACCCCTGCATCTTCAGGTGGTACTTGGTGTATCGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTACGGAGGTGCAGACTGTTCACCAGTTCAACCAAGTGGAAGCTGTTATAATCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAACGACTATTACCAGAAGAATCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTCACCACCACTGACCCAAGTAGTGGAAGCTGTCACTATCCATCATCAGCAACATCAACCAGCATGACTCCACCATCGCCAACAATGTCAACACCGATAATTACGACAACACCACCATCCCCGACCACCCCGACCATAGCTACACCGAGTGGATCATCAATTTATGGTGAGGAGCCATCAGAGTCCCCTAACGCAGCGAACTCTATCTCATCTTGCATGCTTCTGCTGTCCACCACACTCTTGGGGTCACTTCTTGCAGCAATTTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

320

Amino Acids

32.93

Weight (kDa)

4.9

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 158 - 228 4e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AatII GACGTC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 158
AciI CCGC 1 cut(s) 162
AclWI GGATC 2 cut(s) 615, 847
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 447, 483
AcyI GRCGYC 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 710
AgsI TTSAA 2 cut(s) 569, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 7 cut(s) 497, 521, 582, 653, 663, 717, 827
AluI AGCT 7 cut(s) 497, 521, 582, 653, 663, 717, 827
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 2 cut(s) 615, 847
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 881, 944
AsuC2I CCSGG 2 cut(s) 230, 605
AsuHPI GGTGA 3 cut(s) 552, 682, 866
BbvI GCAGC 2 cut(s) 893, 956
BccI CCATC 5 cut(s) 284, 736, 769, 811, 871
BcnI CCSGG 2 cut(s) 230, 605
BcoDI GTCTC 1 cut(s) 297
BfmI CTRYAG 3 cut(s) 150, 512, 664
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 2 cut(s) 882, 945
BlsI GCNGC 2 cut(s) 883, 946
Bme1390I CCNGG 2 cut(s) 230, 605
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 2 cut(s) 230, 605
BmsI GCATC 2 cut(s) 242, 467
BpuMI CCSGG 2 cut(s) 230, 605
BsaHI GRCGYC 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 563
BseGI GGATG 2 cut(s) 233, 803
BseLI CCNNNNNNNGG 1 cut(s) 710
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 1 cut(s) 872
BseXI GCAGC 2 cut(s) 893, 956
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 1 cut(s) 251
BsiSI CCGG 3 cut(s) 230, 248, 604
BslFI GGGAC 1 cut(s) 856
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 1 cut(s) 297
BsmBI CGTCTC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 856
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 607, 839
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 861
BspMAI CTGCAG 2 cut(s) 154, 516
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 2 cut(s) 615, 847
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 247
BssMI GATC 2 cut(s) 607, 839
BssNI GRCGYC 1 cut(s) 290
Bst4CI ACNGT 3 cut(s) 205, 256, 557
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 487, 905
BstF5I GGATG 2 cut(s) 233, 803
BstKTI GATC 2 cut(s) 610, 842
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 607, 839
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNSI RCATGY 1 cut(s) 907
BstSCI CCNGG 2 cut(s) 228, 603
BstSFI CTRYAG 3 cut(s) 150, 512, 664
BstV1I GCAGC 2 cut(s) 893, 956
BstXI CCANNNNNNTGG 1 cut(s) 928
BsuRI GGCC 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 2 cut(s) 233, 803
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 696
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 487, 905
CaiI CAGNNNCTG 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 247
Csp6I GTAC 1 cut(s) 471
CviAII CATG 3 cut(s) 170, 751, 904
CviQI GTAC 1 cut(s) 471
DpnI GATC 2 cut(s) 609, 841
DpnII GATC 2 cut(s) 607, 839
DraIII CACNNNGTG 1 cut(s) 836
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 447, 483
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 3 cut(s) 173, 754, 907
FaqI GGGAC 1 cut(s) 856
FatI CATG 3 cut(s) 169, 750, 903
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 882, 945
FokI GGATG 2 cut(s) 220, 790
Fsp4HI GCNGC 2 cut(s) 882, 945
GluI GCNGC 2 cut(s) 882, 945
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 251
HapII CCGG 3 cut(s) 230, 248, 604
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 3 cut(s) 173, 754, 907
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HinfI GANTC 7 cut(s) 79, 334, 355, 376, 646, 754, 869
HpaII CCGG 3 cut(s) 230, 248, 604
HphI GGTGA 3 cut(s) 552, 682, 866
Hpy166II GTNNAC 5 cut(s) 159, 190, 560, 777, 918
Hpy188I TCNGA 3 cut(s) 502, 868, 959
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 5 cut(s) 159, 190, 560, 777, 918
Hpy99I CGWCG 4 cut(s) 292, 334, 355, 376
HpyAV CCTTC 1 cut(s) 634
HpyCH4III ACNGT 3 cut(s) 205, 256, 557
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 7 cut(s) 29, 152, 458, 514, 551, 903, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpySE526I ACGT 1 cut(s) 290
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 3 cut(s) 173, 754, 907
Kzo9I GATC 2 cut(s) 607, 839
LmnI GCTCC 2 cut(s) 658, 859
Lsp1109I GCAGC 2 cut(s) 893, 956
LweI GCATC 2 cut(s) 242, 467
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 4 cut(s) 205, 256, 719, 933
MalI GATC 2 cut(s) 609, 841
MboI GATC 2 cut(s) 607, 839
MboII GAAGA 3 cut(s) 138, 453, 655
MluCI AATT 3 cut(s) 786, 846, 948
MlyI GAGTC 5 cut(s) 328, 349, 370, 748, 878
MmeI TCCRAC 3 cut(s) 124, 224, 680
MnlI CCTC 4 cut(s) 93, 539, 668, 850
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 663
MspI CCGG 3 cut(s) 230, 248, 604
MspR9I CCNGG 2 cut(s) 230, 605
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 620
NciI CCSGG 2 cut(s) 230, 605
NdeII GATC 2 cut(s) 607, 839
NlaIII CATG 3 cut(s) 173, 754, 907
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 3 cut(s) 256, 719, 933
NspI RCATGY 1 cut(s) 907
OliI CACNNNNGTG 1 cut(s) 221
PaeI GCATGC 1 cut(s) 907
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 79, 646
PflMI CCANNNNNTGG 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 2 cut(s) 883, 946
PleI GAGTC 5 cut(s) 328, 349, 370, 748, 877
PpsI GAGTC 5 cut(s) 328, 349, 370, 748, 877
PsiI TTATAA 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 861
PstI CTGCAG 2 cut(s) 154, 516
PstNI CAGNNNCTG 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 663
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 221
SatI GCNGC 2 cut(s) 882, 945
Sau3AI GATC 2 cut(s) 607, 839
SbfI CCTGCAGG 1 cut(s) 516
SchI GAGTC 5 cut(s) 328, 349, 370, 748, 878
ScrFI CCNGG 2 cut(s) 230, 605
SdaI CCTGCAGG 1 cut(s) 516
SfaNI GCATC 2 cut(s) 242, 467
SfcI CTRYAG 3 cut(s) 150, 512, 664
SmiMI CAYNNNNRTG 1 cut(s) 221
SphI GCATGC 1 cut(s) 907
Sse8387I CCTGCAGG 1 cut(s) 516
Sse9I AATT 3 cut(s) 786, 846, 948
SsiI CCGC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 228, 603
TaaI ACNGT 3 cut(s) 205, 256, 557
TaiI ACGT 1 cut(s) 293
TasI AATT 3 cut(s) 786, 846, 948
TfiI GAWTC 2 cut(s) 79, 646
TscAI CASTG 2 cut(s) 159, 703
TseFI GTSAC 3 cut(s) 256, 719, 933
TseI GCWGC 2 cut(s) 881, 944
Tsp45I GTSAC 3 cut(s) 256, 719, 933
TspDTI ATGAA 1 cut(s) 141
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 2 cut(s) 159, 703
Van91I CCANNNNNTGG 1 cut(s) 710
XceI RCATGY 1 cut(s) 907
XcmI CCANNNNNNNNNTGG 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 158
ZraI GACGTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.