MD10G1266900.v1.1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012588
Physical Location & Seq
Forward (+)
35992341 .. 35994611
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1266900.v1.1.491

Sequence Viewer

Length: 966 bp
ATGGGAGTTGGCTCGCTTCGGCATTCTGTATTGTTTTTCTTGTTTCTTCTCTTTAGTTCAGGTTCAAGTGTTCCAAAGAATCCTCCTTTGGAAGCAACCCACCAAAGCAAAACGCAAGTGAATCAAGAAAAACATATAGTTTCCTCATCTTCGGTGTATACTACCCAGCTCGATGATATTCCCATTGTCAATCCAAGTCCAACAACAACAACTCCCACACCATTTGTGAACCCAACAATATCCCCACCATCACCAACCACAACTCCAACCACAATACCACCGACCCCGCCCCTAAGCCCGACAACTCCCACCACAACTCCAACGTCCCCGACAACTCCCACCACAACTCCATCATACCCTACAACTCCCACCACCACTCCATCATCCCCGACAACTCCCACCACAACTCCATCATCCCCGACAACTCCCACCACAACACCATCATCAGGTGGTACTTGGTGTATTGCAAGCCAATCTGCTTCACAAAATGCCTTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGAGCAGACTGTTCAGCAATTAATCAAGGTGGAAGCTGTTATAACCCAAACACTCTTCACGATCACGCTTCCTACGCCTTCAACGACTACTATCAGAAGAACCCATCTCCTACCAGCTGCAATTTCGGTGGAACAGCTCAACTCACCAACACTGACCCAAGTACTGGTAGCTGTCGCTTTGCATCTTCCTCATCATCAACCAGCATGAACTCACCACCGACAACAATGACACCACCAACGCCAACGATGTCAACAACACCACCAACAATGACATCCCCATACACCCCAAGCATCGCTACACCAGGTGGAGGATCAACAATTTATGGTGACTCGCCAACAGAATCCCCGAACTCAGCAACCTCTATCTCATCTTGCATGCTACCGCTATTCATCATGACTGGGATCTTGGGGTCATTTCTCGCAGAAAATTATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

322

Amino Acids

33.13

Weight (kDa)

5.06

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 152 - 222 5.6e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 692
AccI GTMKAC 1 cut(s) 158
AciI CCGC 2 cut(s) 287, 911
AclWI GGATC 2 cut(s) 847, 938
AdeI CACNNNGTG 1 cut(s) 833
AfaI GTAC 2 cut(s) 454, 691
AfiI CCNNNNNNNGG 3 cut(s) 446, 692, 836
AgsI TTSAA 2 cut(s) 66, 610
AjnI CCWGG 1 cut(s) 829
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 6 cut(s) 169, 503, 564, 645, 665, 699
AluI AGCT 6 cut(s) 169, 503, 564, 645, 665, 699
AlwI GGATC 2 cut(s) 847, 938
ApeKI GCWGC 1 cut(s) 645
AseI ATTAAT 1 cut(s) 549
AsuHPI GGTGA 4 cut(s) 243, 664, 732, 866
BbvI GCAGC 1 cut(s) 632
BccI CCATC 6 cut(s) 256, 358, 388, 418, 448, 640
BciT130I CCWGG 1 cut(s) 831
BfuAI ACCTGC 1 cut(s) 487
BisI GCNGC 1 cut(s) 646
BlsI GCNGC 1 cut(s) 647
BmcAI AGTACT 1 cut(s) 691
Bme1390I CCNGG 1 cut(s) 831
BmrFI CCNGG 1 cut(s) 831
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 2 cut(s) 719, 828
BmuI ACTGGG 1 cut(s) 936
Bpu10I CCTNAGC 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 692, 836
Bse1I ACTGG 2 cut(s) 697, 931
BseBI CCWGG 1 cut(s) 831
BseGI GGATG 3 cut(s) 383, 413, 800
BseLI CCNNNNNNNGG 3 cut(s) 446, 692, 836
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 2 cut(s) 697, 931
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 632
BseYI CCCAGC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 3 cut(s) 446, 692, 836
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 589, 839, 930
BspACI CCGC 2 cut(s) 287, 911
BspCNI CTCAG 1 cut(s) 893
BspHI TCATGA 1 cut(s) 921
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 2 cut(s) 847, 938
BsrI ACTGG 2 cut(s) 697, 931
BssMI GATC 3 cut(s) 589, 839, 930
BssNAI GTATAC 1 cut(s) 159
Bst1107I GTATAC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 14, 469, 905
BstDEI CTNAG 2 cut(s) 293, 880
BstF5I GGATG 3 cut(s) 383, 413, 800
BstKTI GATC 3 cut(s) 592, 842, 933
BstMBI GATC 3 cut(s) 589, 839, 930
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstNI CCWGG 1 cut(s) 831
BstNSI RCATGY 1 cut(s) 907
BstSCI CCNGG 1 cut(s) 829
BstV1I GCAGC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 930
BstYI RGATCY 1 cut(s) 930
BstZ17I GTATAC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 805
BtsCI GGATG 3 cut(s) 383, 413, 800
BtsIMutI CAGTG 1 cut(s) 678
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 3 cut(s) 14, 469, 905
CciI TCATGA 1 cut(s) 921
CsiI ACCWGGT 1 cut(s) 829
Csp6I GTAC 2 cut(s) 453, 690
CspCI CAANNNNNGTGG 4 cut(s) 205, 240, 637, 672
CviAII CATG 3 cut(s) 733, 904, 922
CviQI GTAC 2 cut(s) 453, 690
DdeI CTNAG 2 cut(s) 293, 880
DpnI GATC 3 cut(s) 591, 841, 932
DpnII GATC 3 cut(s) 589, 839, 930
DraIII CACNNNGTG 1 cut(s) 833
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 829
FaeI CATG 3 cut(s) 736, 907, 925
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 732, 903, 921
FauI CCCGC 1 cut(s) 294
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 646
FokI GGATG 3 cut(s) 370, 400, 787
Fsp4HI GCNGC 1 cut(s) 646
GluI GCNGC 1 cut(s) 646
GsaI CCCAGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 736, 907, 925
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HinfI GANTC 4 cut(s) 79, 121, 857, 869
HphI GGTGA 4 cut(s) 243, 664, 732, 866
Hpy166II GTNNAC 3 cut(s) 159, 229, 780
Hpy188I TCNGA 1 cut(s) 624
Hpy188III TCNNGA 4 cut(s) 125, 506, 587, 922
Hpy8I GTNNAC 3 cut(s) 159, 229, 780
HpyAV CCTTC 1 cut(s) 616
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 5 cut(s) 467, 496, 648, 710, 903
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 2 cut(s) 293, 880
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 3 cut(s) 736, 907, 925
Kzo9I GATC 3 cut(s) 589, 839, 930
LmnI GCTCC 1 cut(s) 530
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 2 cut(s) 719, 828
MabI ACCWGGT 1 cut(s) 829
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 854
MalI GATC 3 cut(s) 591, 841, 932
MboI GATC 3 cut(s) 589, 839, 930
MboII GAAGA 5 cut(s) 38, 141, 575, 637, 705
MflI RGATCY 1 cut(s) 930
MluCI AATT 4 cut(s) 546, 649, 846, 955
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 3 cut(s) 224, 290, 344
MnlI CCTC 6 cut(s) 93, 154, 521, 727, 830, 898
MseI TTAA 1 cut(s) 549
MspA1I CMGCKG 1 cut(s) 645
MspR9I CCNGG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 831
MwoI GCNNNNNNNGC 1 cut(s) 602
NdeII GATC 3 cut(s) 589, 839, 930
NlaIII CATG 3 cut(s) 736, 907, 925
NmuCI GTSAC 1 cut(s) 854
NspI RCATGY 1 cut(s) 907
PaeI GCATGC 1 cut(s) 907
PagI TCATGA 1 cut(s) 921
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 79, 121, 869
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 1 cut(s) 647
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
PshBI ATTAAT 1 cut(s) 549
PsiI TTATAA 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 829
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 829
PsuI RGATCY 1 cut(s) 930
PvuII CAGCTG 1 cut(s) 645
RsaI GTAC 2 cut(s) 454, 691
RsaNI GTAC 2 cut(s) 453, 690
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 1 cut(s) 646
Sau3AI GATC 3 cut(s) 589, 839, 930
ScaI AGTACT 1 cut(s) 691
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 1 cut(s) 831
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 2 cut(s) 719, 828
SphI GCATGC 1 cut(s) 907
Sse9I AATT 4 cut(s) 546, 649, 846, 955
SsiI CCGC 2 cut(s) 287, 911
StyD4I CCNGG 1 cut(s) 829
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 546, 649, 846, 955
TatI WGTACW 1 cut(s) 689
TfiI GAWTC 3 cut(s) 79, 121, 869
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 1 cut(s) 645
Tsp45I GTSAC 1 cut(s) 854
TspDTI ATGAA 2 cut(s) 749, 907
TspRI CASTG 1 cut(s) 685
Van91I CCANNNNNTGG 1 cut(s) 692
VspI ATTAAT 1 cut(s) 549
XceI RCATGY 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.